HEADER UNKNOWN FUNCTION 21-AUG-09 2WQG TITLE SAP DOMAIN FROM THO1: L31W (FLUOROPHORE) MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN THO1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAP DOMAIN, RESIDUES 2-50; COMPND 5 SYNONYM: THO1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA DERIVATIVE KEYWDS UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR C.A.DODSON,N.FERGUSON,T.J.RUTHERFORD,C.M.JOHNSON,A.R.FERSHT REVDAT 4 15-MAY-24 2WQG 1 REMARK REVDAT 3 24-JAN-18 2WQG 1 SOURCE REVDAT 2 21-APR-10 2WQG 1 JRNL REVDAT 1 16-FEB-10 2WQG 0 JRNL AUTH C.A.DODSON,N.FERGUSON,T.J.RUTHERFORD,C.M.JOHNSON,A.R.FERSHT JRNL TITL ENGINEERING A TWO-HELIX BUNDLE PROTEIN FOR FOLDING STUDIES. JRNL REF PROTEIN ENG.DES.SEL. V. 23 357 2010 JRNL REFN ISSN 1741-0126 JRNL PMID 20130106 JRNL DOI 10.1093/PROTEIN/GZP080 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WQG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1290039762. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 500 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER / 5% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY; TOCSY; HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : MANUAL ASSIGNMENT THEN SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES REACHING ACCEPTANCE REMARK 210 CRITERIA OF MINIMUM RESTRAINT REMARK 210 VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: STRUCTURE DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELLED SAMPLE. STEREO-SPECIFIC REMARK 210 ASSIGNMENT OF LEU AND VAL FROM 10PC-13C LABELLED SAMPLE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 30 TO TRP REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 38.03 -145.86 REMARK 500 1 LEU A 8 -166.06 -57.13 REMARK 500 1 ASN A 21 -5.05 88.19 REMARK 500 1 LEU A 22 -78.24 -60.22 REMARK 500 1 SER A 23 179.23 149.97 REMARK 500 1 LEU A 27 163.86 169.03 REMARK 500 1 GLU A 45 -63.52 -135.14 REMARK 500 2 ASP A 4 35.35 -152.70 REMARK 500 2 LEU A 8 -165.72 -57.48 REMARK 500 2 ASN A 21 -10.77 100.34 REMARK 500 2 LEU A 22 -122.38 -81.92 REMARK 500 2 LEU A 27 166.04 170.20 REMARK 500 2 LYS A 43 29.49 48.94 REMARK 500 3 SER A 2 -45.60 -157.33 REMARK 500 3 ALA A 3 -85.02 -77.84 REMARK 500 3 LEU A 8 -162.93 -59.99 REMARK 500 3 ASN A 21 -15.23 102.48 REMARK 500 3 LEU A 22 -123.82 -77.19 REMARK 500 3 LEU A 27 164.65 170.13 REMARK 500 3 GLU A 45 -62.43 -133.54 REMARK 500 4 ASP A 4 35.57 -151.95 REMARK 500 4 LEU A 8 -166.81 -58.42 REMARK 500 4 ASN A 21 -10.58 99.39 REMARK 500 4 LEU A 22 -122.30 -73.07 REMARK 500 4 LEU A 27 164.56 169.82 REMARK 500 4 GLU A 45 -73.03 -97.68 REMARK 500 4 GLU A 47 172.55 -56.48 REMARK 500 5 ASP A 4 38.61 -146.23 REMARK 500 5 LEU A 8 -163.88 -58.08 REMARK 500 5 ASN A 21 -7.17 90.18 REMARK 500 5 LEU A 22 -77.73 -60.81 REMARK 500 5 SER A 23 -179.96 146.16 REMARK 500 5 LEU A 27 165.04 170.40 REMARK 500 5 LYS A 43 38.35 -83.48 REMARK 500 5 GLU A 45 -53.75 -139.59 REMARK 500 5 SER A 46 83.41 -156.91 REMARK 500 6 SER A 2 -169.30 -126.66 REMARK 500 6 ALA A 3 -85.34 -101.49 REMARK 500 6 LEU A 8 -161.41 -59.38 REMARK 500 6 ASN A 21 -8.75 104.11 REMARK 500 6 LEU A 22 -157.68 -92.97 REMARK 500 6 LEU A 27 164.86 167.37 REMARK 500 6 VAL A 48 94.68 41.51 REMARK 500 6 SER A 49 -62.04 -142.68 REMARK 500 7 ASP A 4 35.51 -144.77 REMARK 500 7 LEU A 8 -165.34 -57.62 REMARK 500 7 ASN A 21 -6.93 90.93 REMARK 500 7 LEU A 22 -79.65 -59.70 REMARK 500 7 SER A 23 -179.60 149.37 REMARK 500 7 LEU A 27 165.11 170.30 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H1J RELATED DB: PDB REMARK 900 THE SAP DOMAIN IS A DNA-BINDING DOMAIN CAPABLE OF BINDING S/MAR DNA REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE NUMBERING FOR CONSTRUCT AS GIVEN, NOT FOR FULL- REMARK 999 LENGTH PROTEIN. L31W MUTANT STRUCTURE SOLVED HERE. DBREF 2WQG A 1 2 PDB 2WQG 2WQG 1 2 DBREF 2WQG A 3 51 UNP P40040 THO1_YEAST 2 50 SEQADV 2WQG TRP A 31 UNP P40040 LEU 30 ENGINEERED MUTATION SEQRES 1 A 51 GLY SER ALA ASP TYR SER SER LEU THR VAL VAL GLN LEU SEQRES 2 A 51 LYS ASP LEU LEU THR LYS ARG ASN LEU SER VAL GLY GLY SEQRES 3 A 51 LEU LYS ASN GLU TRP VAL GLN ARG LEU ILE LYS ASP ASP SEQRES 4 A 51 GLU GLU SER LYS GLY GLU SER GLU VAL SER PRO GLN HELIX 1 1 THR A 9 ASN A 21 1 13 HELIX 2 2 LEU A 27 GLU A 40 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1