HEADER TRANSFERASE 25-AUG-09 2WQP TITLE CRYSTAL STRUCTURE OF SIALIC ACID SYNTHASE NEUB-INHIBITOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYSIALIC ACID CAPSULE BIOSYNTHESIS PROTEIN SIAC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SYNC PROTEIN, SIALIC ACID SYNTHASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 491; SOURCE 4 STRAIN: SEROGROUP B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCWORI KEYWDS NEUB, INHIBITOR, TIM BARREL, SIALIC ACID SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.LIU,H.J.LEE,N.C.J.STRYNADKA,M.E.TANNER REVDAT 4 13-NOV-24 2WQP 1 REMARK LINK REVDAT 3 12-OCT-11 2WQP 1 JRNL REVDAT 2 13-JUL-11 2WQP 1 VERSN REVDAT 1 15-SEP-09 2WQP 0 JRNL AUTH F.LIU,H.J.LEE,N.C.J.STRYNADKA,M.E.TANNER JRNL TITL THE INHIBITION OF NEISSERIA MENINGITIDIS SIALIC ACID JRNL TITL 2 SYNTHASE BY A TETRAHEDRAL INTERMEDIATE ANALOG. JRNL REF BIOCHEMISTRY V. 48 9194 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19719325 JRNL DOI 10.1021/BI9012758 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 33373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2371 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2681 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.692 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2782 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2530 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3747 ; 1.202 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5928 ; 0.637 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 351 ; 5.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;35.602 ;25.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;12.220 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.795 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3083 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 514 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1733 ; 0.495 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 715 ; 0.151 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2784 ; 0.911 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1049 ; 1.946 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 961 ; 2.943 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 107.0504 -3.6395 61.8788 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.0857 REMARK 3 T33: 0.1253 T12: -0.0243 REMARK 3 T13: -0.1054 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 4.7970 L22: 10.0820 REMARK 3 L33: 6.9934 L12: -3.1692 REMARK 3 L13: -0.4598 L23: 0.2146 REMARK 3 S TENSOR REMARK 3 S11: -0.3199 S12: -0.2771 S13: 0.2435 REMARK 3 S21: 0.6035 S22: 0.0881 S23: -0.4144 REMARK 3 S31: -0.2403 S32: 0.0522 S33: 0.2318 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): 104.4516 -12.8018 45.1371 REMARK 3 T TENSOR REMARK 3 T11: 0.0029 T22: 0.0539 REMARK 3 T33: 0.0807 T12: -0.0051 REMARK 3 T13: 0.0075 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.8157 L22: 1.6651 REMARK 3 L33: 0.8863 L12: -0.1155 REMARK 3 L13: 0.2796 L23: 0.5263 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.0352 S13: 0.0845 REMARK 3 S21: -0.0356 S22: -0.0137 S23: -0.2473 REMARK 3 S31: -0.0253 S32: 0.0962 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 102.0125 -31.2698 46.6881 REMARK 3 T TENSOR REMARK 3 T11: 0.0521 T22: 0.0753 REMARK 3 T33: 0.0765 T12: 0.0247 REMARK 3 T13: 0.0055 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.7103 L22: 1.1281 REMARK 3 L33: 0.3942 L12: 1.2011 REMARK 3 L13: -0.3965 L23: -0.3131 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.1029 S13: -0.1710 REMARK 3 S21: -0.0580 S22: -0.0152 S23: -0.1991 REMARK 3 S31: 0.1007 S32: 0.0785 S33: 0.0349 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 106.9941 -20.9619 57.5990 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.0484 REMARK 3 T33: 0.0703 T12: 0.0008 REMARK 3 T13: -0.0384 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.7687 L22: 0.8773 REMARK 3 L33: 0.8190 L12: -0.1503 REMARK 3 L13: -0.2634 L23: -0.1227 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.0483 S13: 0.0273 REMARK 3 S21: 0.1391 S22: -0.0441 S23: -0.2465 REMARK 3 S31: 0.0307 S32: 0.1642 S33: 0.0474 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): 94.1146 -12.1592 60.6852 REMARK 3 T TENSOR REMARK 3 T11: 0.0630 T22: 0.0257 REMARK 3 T33: 0.0115 T12: -0.0077 REMARK 3 T13: -0.0113 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.1202 L22: 1.2722 REMARK 3 L33: 0.7734 L12: -0.3406 REMARK 3 L13: 0.2562 L23: -0.2397 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: -0.1043 S13: 0.0562 REMARK 3 S21: 0.2358 S22: 0.0139 S23: -0.0210 REMARK 3 S31: 0.0075 S32: 0.0240 S33: -0.0188 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 234 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 95.0608 -5.0031 46.6249 REMARK 3 T TENSOR REMARK 3 T11: 0.0047 T22: 0.0405 REMARK 3 T33: 0.0371 T12: -0.0077 REMARK 3 T13: -0.0009 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.4219 L22: 3.7583 REMARK 3 L33: 1.1177 L12: -0.6912 REMARK 3 L13: -0.2277 L23: 1.4677 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.0209 S13: 0.0419 REMARK 3 S21: -0.0792 S22: -0.0374 S23: -0.0884 REMARK 3 S31: -0.0431 S32: -0.0033 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 280 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 76.7779 37.8502 63.7216 REMARK 3 T TENSOR REMARK 3 T11: 0.1151 T22: 0.0529 REMARK 3 T33: 0.0305 T12: -0.0108 REMARK 3 T13: 0.0410 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.7395 L22: 3.1078 REMARK 3 L33: 2.2807 L12: -1.4653 REMARK 3 L13: -1.8262 L23: 1.6002 REMARK 3 S TENSOR REMARK 3 S11: 0.1538 S12: -0.0190 S13: 0.1296 REMARK 3 S21: 0.2761 S22: -0.1621 S23: 0.0985 REMARK 3 S31: -0.1539 S32: -0.2095 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 349 REMARK 3 ORIGIN FOR THE GROUP (A): 76.1593 41.2816 67.6050 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.0525 REMARK 3 T33: 0.0400 T12: -0.0386 REMARK 3 T13: 0.0529 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.3905 L22: 2.3729 REMARK 3 L33: 3.8901 L12: -0.6366 REMARK 3 L13: -1.7047 L23: 1.3756 REMARK 3 S TENSOR REMARK 3 S11: 0.1702 S12: -0.2366 S13: 0.1973 REMARK 3 S21: 0.3301 S22: -0.1429 S23: 0.0852 REMARK 3 S31: -0.1788 S32: 0.0143 S33: -0.0273 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2WQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1290040226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 OPTICS : HIGH-RESOLUTION DOUBLE- CRYSTAL REMARK 200 SAGITTAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BMC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.50-1.55 M MALIC ACID, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.30950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.87200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.30950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.87200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 175.85700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, PRO 111 TO LEU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 258 O HOH A 2224 1.98 REMARK 500 O ASP A 242 O HOH A 2212 2.07 REMARK 500 O HOH A 2279 O HOH A 2280 2.10 REMARK 500 O HOH A 2042 O HOH A 2043 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2176 O HOH A 2252 2855 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 184 64.66 -106.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1351 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 215 NE2 REMARK 620 2 HIS A 236 NE2 90.2 REMARK 620 3 WQP A1350 OAC 87.1 155.1 REMARK 620 4 HOH A2312 O 166.7 79.3 105.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WQP A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMR A 1357 DBREF 2WQP A 1 349 UNP Q7DDU0 Q7DDU0_NEIMB 1 349 SEQADV 2WQP LEU A 111 UNP Q7DDU0 PRO 111 ENGINEERED MUTATION SEQRES 1 A 349 MSE GLN ASN ASN ASN GLU PHE LYS ILE GLY ASN ARG SER SEQRES 2 A 349 VAL GLY TYR ASN HIS GLU PRO LEU ILE ILE CYS GLU ILE SEQRES 3 A 349 GLY ILE ASN HIS GLU GLY SER LEU LYS THR ALA PHE GLU SEQRES 4 A 349 MSE VAL ASP ALA ALA TYR ASN ALA GLY ALA GLU VAL VAL SEQRES 5 A 349 LYS HIS GLN THR HIS ILE VAL GLU ASP GLU MSE SER ASP SEQRES 6 A 349 GLU ALA LYS GLN VAL ILE PRO GLY ASN ALA ASP VAL SER SEQRES 7 A 349 ILE TYR GLU ILE MSE GLU ARG CYS ALA LEU ASN GLU GLU SEQRES 8 A 349 ASP GLU ILE LYS LEU LYS GLU TYR VAL GLU SER LYS GLY SEQRES 9 A 349 MSE ILE PHE ILE SER THR LEU PHE SER ARG ALA ALA ALA SEQRES 10 A 349 LEU ARG LEU GLN ARG MSE ASP ILE PRO ALA TYR LYS ILE SEQRES 11 A 349 GLY SER GLY GLU CYS ASN ASN TYR PRO LEU ILE LYS LEU SEQRES 12 A 349 VAL ALA SER PHE GLY LYS PRO ILE ILE LEU SER THR GLY SEQRES 13 A 349 MSE ASN SER ILE GLU SER ILE LYS LYS SER VAL GLU ILE SEQRES 14 A 349 ILE ARG GLU ALA GLY VAL PRO TYR ALA LEU LEU HIS CYS SEQRES 15 A 349 THR ASN ILE TYR PRO THR PRO TYR GLU ASP VAL ARG LEU SEQRES 16 A 349 GLY GLY MSE ASN ASP LEU SER GLU ALA PHE PRO ASP ALA SEQRES 17 A 349 ILE ILE GLY LEU SER ASP HIS THR LEU ASP ASN TYR ALA SEQRES 18 A 349 CYS LEU GLY ALA VAL ALA LEU GLY GLY SER ILE LEU GLU SEQRES 19 A 349 ARG HIS PHE THR ASP ARG MSE ASP ARG PRO GLY PRO ASP SEQRES 20 A 349 ILE VAL CYS SER MSE ASN PRO ASP THR PHE LYS GLU LEU SEQRES 21 A 349 LYS GLN GLY ALA HIS ALA LEU LYS LEU ALA ARG GLY GLY SEQRES 22 A 349 LYS LYS ASP THR ILE ILE ALA GLY GLU LYS PRO THR LYS SEQRES 23 A 349 ASP PHE ALA PHE ALA SER VAL VAL ALA ASP LYS ASP ILE SEQRES 24 A 349 LYS LYS GLY GLU LEU LEU SER GLY ASP ASN LEU TRP VAL SEQRES 25 A 349 LYS ARG PRO GLY ASN GLY ASP PHE SER VAL ASN GLU TYR SEQRES 26 A 349 GLU THR LEU PHE GLY LYS VAL ALA ALA CYS ASN ILE ARG SEQRES 27 A 349 LYS GLY ALA GLN ILE LYS LYS THR ASP ILE GLU MODRES 2WQP MSE A 40 MET SELENOMETHIONINE MODRES 2WQP MSE A 63 MET SELENOMETHIONINE MODRES 2WQP MSE A 83 MET SELENOMETHIONINE MODRES 2WQP MSE A 105 MET SELENOMETHIONINE MODRES 2WQP MSE A 123 MET SELENOMETHIONINE MODRES 2WQP MSE A 157 MET SELENOMETHIONINE MODRES 2WQP MSE A 198 MET SELENOMETHIONINE MODRES 2WQP MSE A 241 MET SELENOMETHIONINE MODRES 2WQP MSE A 252 MET SELENOMETHIONINE HET MSE A 40 8 HET MSE A 63 8 HET MSE A 83 8 HET MSE A 105 8 HET MSE A 123 8 HET MSE A 157 8 HET MSE A 198 8 HET MSE A 241 8 HET MSE A 252 8 HET WQP A1350 25 HET MN A1351 1 HET ACT A1352 4 HET EDO A1353 4 HET EDO A1354 4 HET EDO A1355 4 HET EDO A1356 4 HET LMR A1357 9 HETNAM MSE SELENOMETHIONINE HETNAM WQP 5-(ACETYLAMINO)-3,5-DIDEOXY-2-O-PHOSPHONO-D-ERYTHRO-L- HETNAM 2 WQP MANNO-NONONIC ACID HETNAM MN MANGANESE (II) ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN LMR L-MALATE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 WQP C11 H22 N O12 P FORMUL 3 MN MN 2+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 LMR C4 H6 O5 FORMUL 10 HOH *322(H2 O) HELIX 1 1 SER A 33 ALA A 47 1 15 HELIX 2 2 ILE A 58 MSE A 63 1 6 HELIX 3 3 SER A 64 VAL A 70 5 7 HELIX 4 4 SER A 78 ALA A 87 1 10 HELIX 5 5 ASN A 89 LYS A 103 1 15 HELIX 6 6 SER A 113 ASP A 124 1 12 HELIX 7 7 ASN A 137 SER A 146 1 10 HELIX 8 8 SER A 159 ALA A 173 1 15 HELIX 9 9 PRO A 189 VAL A 193 5 5 HELIX 10 10 MSE A 198 PHE A 205 1 8 HELIX 11 11 ASP A 247 SER A 251 5 5 HELIX 12 12 ASN A 253 GLN A 262 1 10 HELIX 13 13 ALA A 264 ARG A 271 1 8 HELIX 14 14 GLU A 282 PHE A 290 1 9 HELIX 15 15 VAL A 322 PHE A 329 5 8 HELIX 16 16 LYS A 344 ASP A 347 5 4 SHEET 1 AA 2 PHE A 7 LYS A 8 0 SHEET 2 AA 2 SER A 13 VAL A 14 -1 O VAL A 14 N PHE A 7 SHEET 1 AB 4 ILE A 106 LEU A 111 0 SHEET 2 AB 4 VAL A 51 THR A 56 1 O VAL A 52 N ILE A 108 SHEET 3 AB 4 LEU A 21 GLU A 25 1 O CYS A 24 N LYS A 53 SHEET 4 AB 4 ILE A 232 HIS A 236 1 O LEU A 233 N ILE A 23 SHEET 1 AC 3 TYR A 128 ILE A 130 0 SHEET 2 AC 3 ILE A 151 SER A 154 1 O ILE A 152 N ILE A 130 SHEET 3 AC 3 TYR A 177 LEU A 180 1 O ALA A 178 N LEU A 153 SHEET 1 AD 2 SER A 292 ALA A 295 0 SHEET 2 AD 2 LEU A 310 LYS A 313 -1 O TRP A 311 N VAL A 294 LINK C GLU A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N VAL A 41 1555 1555 1.33 LINK C GLU A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N SER A 64 1555 1555 1.33 LINK C ILE A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N GLU A 84 1555 1555 1.33 LINK C GLY A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N ILE A 106 1555 1555 1.33 LINK C ARG A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N ASP A 124 1555 1555 1.33 LINK C GLY A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N ASN A 158 1555 1555 1.34 LINK C GLY A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N ASN A 199 1555 1555 1.32 LINK C ARG A 240 N MSE A 241 1555 1555 1.33 LINK C MSE A 241 N ASP A 242 1555 1555 1.33 LINK C SER A 251 N MSE A 252 1555 1555 1.32 LINK C MSE A 252 N ASN A 253 1555 1555 1.32 LINK NE2 HIS A 215 MN MN A1351 1555 1555 2.12 LINK NE2 HIS A 236 MN MN A1351 1555 1555 2.43 LINK OAC WQP A1350 MN MN A1351 1555 1555 2.19 LINK MN MN A1351 O HOH A2312 1555 1555 2.16 CISPEP 1 TYR A 186 PRO A 187 0 -0.44 CISPEP 2 ARG A 314 PRO A 315 0 -1.26 SITE 1 AC1 22 GLU A 25 LYS A 53 GLN A 55 ASN A 74 SITE 2 AC1 22 MSE A 83 THR A 110 PHE A 112 LYS A 129 SITE 3 AC1 22 SER A 132 SER A 154 ASN A 184 TYR A 186 SITE 4 AC1 22 SER A 213 HIS A 215 HIS A 236 PRO A 246 SITE 5 AC1 22 ASP A 247 MN A1351 HOH A2141 HOH A2310 SITE 6 AC1 22 HOH A2311 HOH A2312 SITE 1 AC2 4 HIS A 215 HIS A 236 WQP A1350 HOH A2312 SITE 1 AC3 6 GLN A 2 MSE A 198 SER A 202 LEU A 228 SITE 2 AC3 6 GLY A 229 GLY A 230 SITE 1 AC4 6 LYS A 35 THR A 188 PRO A 189 THR A 216 SITE 2 AC4 6 LEU A 217 HOH A2313 SITE 1 AC5 6 LYS A 275 THR A 277 ILE A 278 LYS A 286 SITE 2 AC5 6 HOH A2253 HOH A2314 SITE 1 AC6 6 ASP A 218 ASN A 219 TYR A 220 HOH A2227 SITE 2 AC6 6 HOH A2315 HOH A2316 SITE 1 AC7 4 PRO A 72 ALA A 75 ASP A 76 HOH A2078 SITE 1 AC8 6 HIS A 265 HOH A2317 HOH A2318 HOH A2320 SITE 2 AC8 6 HOH A2321 HOH A2322 CRYST1 58.619 75.744 77.361 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017059 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012926 0.00000