HEADER CELL INVASION 27-AUG-09 2WQX TITLE INLB321_4R: S199R, D200R, G206R, A227R, C242A MUTANT OF THE LISTERIA TITLE 2 MONOCYTOGENES INLB INTERNALIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERNALIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: INTERNALIN DOMAIN, RESIDUES 36-321; COMPND 5 SYNONYM: INLB; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUES 36-321 OF LISTERIA MONOCYTOGENES INLB 4R COMPND 9 MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 STRAIN: EGD-E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM30 KEYWDS HGF RECEPTOR LIGAND, LEUCINE-RICH REPEAT, LEUCINE RICH REPEAT, LRR, KEYWDS 2 C-MET LIGAND, CELL INVASION, VIRULENCE FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR H.H.NIEMANN,D.M.FERRARIS,D.W.HEINZ REVDAT 7 20-DEC-23 2WQX 1 REMARK REVDAT 6 08-MAY-19 2WQX 1 REMARK REVDAT 5 06-MAR-19 2WQX 1 REMARK REVDAT 4 13-JUL-11 2WQX 1 VERSN REVDAT 3 09-FEB-10 2WQX 1 JRNL REMARK FORMUL REVDAT 2 24-NOV-09 2WQX 1 SOURCE JRNL REVDAT 1 10-NOV-09 2WQX 0 JRNL AUTH D.M.FERRARIS,E.GHERARDI,Y.DI,D.W.HEINZ,H.H.NIEMANN JRNL TITL LIGAND-MEDIATED DIMERIZATION OF THE MET RECEPTOR TYROSINE JRNL TITL 2 KINASE BY THE BACTERIAL INVASION PROTEIN INLB. JRNL REF J.MOL.BIOL. V. 395 522 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19900460 JRNL DOI 10.1016/J.JMB.2009.10.074 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1677 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1630 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : -0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.832 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4671 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3164 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6346 ; 1.799 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7856 ; 1.081 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 6.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;45.146 ;26.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 898 ;14.752 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 762 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5074 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 800 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2886 ; 0.850 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1146 ; 0.274 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4728 ; 1.460 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1785 ; 2.543 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1610 ; 4.098 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 10 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 45 1 REMARK 3 1 B 1 B 45 1 REMARK 3 2 A 47 A 50 1 REMARK 3 2 B 47 B 50 1 REMARK 3 3 A 52 A 88 1 REMARK 3 3 B 52 B 88 1 REMARK 3 4 A 90 A 108 1 REMARK 3 4 B 90 B 108 1 REMARK 3 5 A 110 A 130 1 REMARK 3 5 B 110 B 130 1 REMARK 3 6 A 134 A 150 1 REMARK 3 6 B 134 B 150 1 REMARK 3 7 A 151 A 174 1 REMARK 3 7 B 151 B 174 1 REMARK 3 8 A 176 A 211 1 REMARK 3 8 B 176 B 211 1 REMARK 3 9 A 213 A 237 1 REMARK 3 9 B 213 B 237 1 REMARK 3 10 A 239 A 321 1 REMARK 3 10 B 239 B 321 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3675 ; 0.07 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 3675 ; 0.07 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 3675 ; 0.17 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 3675 ; 0.17 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8780 -22.4910 -10.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0533 REMARK 3 T33: 0.0420 T12: 0.0023 REMARK 3 T13: 0.0102 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.3166 L22: 0.3336 REMARK 3 L33: 2.1426 L12: -0.0403 REMARK 3 L13: 0.4417 L23: 0.3598 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.0045 S13: -0.0774 REMARK 3 S21: -0.0174 S22: -0.0266 S23: 0.0079 REMARK 3 S31: 0.1779 S32: -0.0517 S33: -0.0058 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 321 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4180 3.9460 -18.1680 REMARK 3 T TENSOR REMARK 3 T11: 0.0266 T22: 0.0712 REMARK 3 T33: 0.0355 T12: 0.0148 REMARK 3 T13: -0.0056 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.3606 L22: 0.2901 REMARK 3 L33: 1.9151 L12: 0.0164 REMARK 3 L13: -0.4610 L23: 0.3334 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: -0.0095 S13: 0.0795 REMARK 3 S21: 0.0062 S22: -0.0237 S23: 0.0058 REMARK 3 S31: -0.1768 S32: -0.0723 S33: -0.0068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES ARE RESIDUAL ONLY. ATOM RECORD CONTAINS REMARK 3 RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2WQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1290040467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944PLUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1H6T REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOUR DIFFUSION AT 293K REMARK 280 WITH 1 UL PROTEIN (3.8 MG/ML IN 50 MM HEPES, PH 7.0, 100 MM NACL) REMARK 280 PLUS 0.5 UL RESERVOIR (17% PEG1000MME, 90 MM NA-CITRATE)., REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 199 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 200 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLY 206 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ALA 227 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 242 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 199 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 200 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLY 206 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ALA 227 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 242 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 MET A 35 REMARK 465 GLY B 33 REMARK 465 ALA B 34 REMARK 465 MET B 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 173 O HOH B 2072 2.08 REMARK 500 OG SER A 168 O HOH A 2072 2.11 REMARK 500 OG1 THR B 177 O HOH B 2074 2.13 REMARK 500 OG SER B 65 O HOH B 2011 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 293 CD GLU A 293 OE2 -0.074 REMARK 500 VAL A 294 CB VAL A 294 CG2 -0.135 REMARK 500 GLU B 293 CD GLU B 293 OE1 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 294 CG1 - CB - CG2 ANGL. DEV. = -11.3 DEGREES REMARK 500 VAL B 294 CG1 - CB - CG2 ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG B 310 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 83 55.90 -141.65 REMARK 500 LEU A 97 71.19 -114.76 REMARK 500 ASN A 108 -166.56 -117.34 REMARK 500 ASN A 130 -165.97 -115.10 REMARK 500 ASN A 174 -164.70 -123.44 REMARK 500 ASN A 196 -153.47 -129.32 REMARK 500 ASN A 218 -151.26 -118.58 REMARK 500 LEU A 287 70.80 -115.45 REMARK 500 GLU A 293 144.95 -170.16 REMARK 500 ALA B 83 58.15 -140.67 REMARK 500 LEU B 97 75.35 -114.48 REMARK 500 ASN B 108 -163.70 -117.33 REMARK 500 ASN B 130 -164.65 -116.43 REMARK 500 ASN B 174 -158.81 -123.98 REMARK 500 ASN B 196 -154.44 -129.42 REMARK 500 ASN B 218 -151.73 -117.73 REMARK 500 LEU B 287 74.43 -114.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H6T RELATED DB: PDB REMARK 900 INTERNALIN B: CRYSTAL STRUCTURE OF FUSED N- TERMINAL DOMAINS. REMARK 900 RELATED ID: 1OTM RELATED DB: PDB REMARK 900 CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN REMARK 900 RELATED ID: 2UZX RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH REMARK 900 THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: CRYSTAL FORM I REMARK 900 RELATED ID: 1OTN RELATED DB: PDB REMARK 900 CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN REMARK 900 RELATED ID: 2UZY RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN RECEPTOR TYROSINE KINASE MET IN COMPLEX WITH REMARK 900 THE LISTERIA MONOCYTOGENES INVASION PROTEIN INLB: LOW RESOLUTION, REMARK 900 CRYSTAL FORM II REMARK 900 RELATED ID: 1M9S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INTERNALIN B (INLB), A LISTERIAMONOCYTOGENES REMARK 900 VIRULENCE PROTEIN CONTAINING SH3-LIKEDOMAINS. REMARK 900 RELATED ID: 1OTO RELATED DB: PDB REMARK 900 CALCIUM-BINDING MUTANT OF THE INTERNALIN B LRR DOMAIN REMARK 900 RELATED ID: 1D0B RELATED DB: PDB REMARK 900 INTERNALIN B LEUCINE RICH REPEAT DOMAIN REMARK 900 RELATED ID: 2WQW RELATED DB: PDB REMARK 900 DOUBLE-DISULFIDE CROSS-LINKED CRYSTAL DIMER OF THE LISTERIA REMARK 900 MONOCYTOGENES INLB INTERNALIN DOMAIN REMARK 900 RELATED ID: 2WQV RELATED DB: PDB REMARK 900 INTERNALIN DOMAIN OF LISTERIA MONOCYTOGENES INLB: RHOMBOHEDRAL REMARK 900 CRYSTAL FORM REMARK 900 RELATED ID: 2WQU RELATED DB: PDB REMARK 900 INTERNALIN DOMAIN OF LISTERIA MONOCYTOGENES INLB: TRICLINIC CRYSTAL REMARK 900 FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 33-35 REMAIN AFTER TEV CLEAVAGE OF THE GST-FUSION REMARK 999 PROTEIN DBREF 2WQX A 33 35 PDB 2WQX 2WQX 33 35 DBREF 2WQX A 36 321 UNP P25147 INLB_LISMO 36 321 DBREF 2WQX B 33 35 PDB 2WQX 2WQX 33 35 DBREF 2WQX B 36 321 UNP P25147 INLB_LISMO 36 321 SEQADV 2WQX ARG A 199 UNP P25147 SER 199 ENGINEERED MUTATION SEQADV 2WQX ARG A 200 UNP P25147 ASP 200 ENGINEERED MUTATION SEQADV 2WQX ARG A 206 UNP P25147 GLY 206 ENGINEERED MUTATION SEQADV 2WQX ARG A 227 UNP P25147 ALA 227 ENGINEERED MUTATION SEQADV 2WQX ALA A 242 UNP P25147 CYS 242 ENGINEERED MUTATION SEQADV 2WQX ARG B 199 UNP P25147 SER 199 ENGINEERED MUTATION SEQADV 2WQX ARG B 200 UNP P25147 ASP 200 ENGINEERED MUTATION SEQADV 2WQX ARG B 206 UNP P25147 GLY 206 ENGINEERED MUTATION SEQADV 2WQX ARG B 227 UNP P25147 ALA 227 ENGINEERED MUTATION SEQADV 2WQX ALA B 242 UNP P25147 CYS 242 ENGINEERED MUTATION SEQRES 1 A 289 GLY ALA MET GLU THR ILE THR VAL PRO THR PRO ILE LYS SEQRES 2 A 289 GLN ILE PHE SER ASP ASP ALA PHE ALA GLU THR ILE LYS SEQRES 3 A 289 ASP ASN LEU LYS LYS LYS SER VAL THR ASP ALA VAL THR SEQRES 4 A 289 GLN ASN GLU LEU ASN SER ILE ASP GLN ILE ILE ALA ASN SEQRES 5 A 289 ASN SER ASP ILE LYS SER VAL GLN GLY ILE GLN TYR LEU SEQRES 6 A 289 PRO ASN VAL THR LYS LEU PHE LEU ASN GLY ASN LYS LEU SEQRES 7 A 289 THR ASP ILE LYS PRO LEU ALA ASN LEU LYS ASN LEU GLY SEQRES 8 A 289 TRP LEU PHE LEU ASP GLU ASN LYS VAL LYS ASP LEU SER SEQRES 9 A 289 SER LEU LYS ASP LEU LYS LYS LEU LYS SER LEU SER LEU SEQRES 10 A 289 GLU HIS ASN GLY ILE SER ASP ILE ASN GLY LEU VAL HIS SEQRES 11 A 289 LEU PRO GLN LEU GLU SER LEU TYR LEU GLY ASN ASN LYS SEQRES 12 A 289 ILE THR ASP ILE THR VAL LEU SER ARG LEU THR LYS LEU SEQRES 13 A 289 ASP THR LEU SER LEU GLU ASP ASN GLN ILE ARG ARG ILE SEQRES 14 A 289 VAL PRO LEU ALA ARG LEU THR LYS LEU GLN ASN LEU TYR SEQRES 15 A 289 LEU SER LYS ASN HIS ILE SER ASP LEU ARG ALA LEU ARG SEQRES 16 A 289 GLY LEU LYS ASN LEU ASP VAL LEU GLU LEU PHE SER GLN SEQRES 17 A 289 GLU ALA LEU ASN LYS PRO ILE ASN HIS GLN SER ASN LEU SEQRES 18 A 289 VAL VAL PRO ASN THR VAL LYS ASN THR ASP GLY SER LEU SEQRES 19 A 289 VAL THR PRO GLU ILE ILE SER ASP ASP GLY ASP TYR GLU SEQRES 20 A 289 LYS PRO ASN VAL LYS TRP HIS LEU PRO GLU PHE THR ASN SEQRES 21 A 289 GLU VAL SER PHE ILE PHE TYR GLN PRO VAL THR ILE GLY SEQRES 22 A 289 LYS ALA LYS ALA ARG PHE HIS GLY ARG VAL THR GLN PRO SEQRES 23 A 289 LEU LYS GLU SEQRES 1 B 289 GLY ALA MET GLU THR ILE THR VAL PRO THR PRO ILE LYS SEQRES 2 B 289 GLN ILE PHE SER ASP ASP ALA PHE ALA GLU THR ILE LYS SEQRES 3 B 289 ASP ASN LEU LYS LYS LYS SER VAL THR ASP ALA VAL THR SEQRES 4 B 289 GLN ASN GLU LEU ASN SER ILE ASP GLN ILE ILE ALA ASN SEQRES 5 B 289 ASN SER ASP ILE LYS SER VAL GLN GLY ILE GLN TYR LEU SEQRES 6 B 289 PRO ASN VAL THR LYS LEU PHE LEU ASN GLY ASN LYS LEU SEQRES 7 B 289 THR ASP ILE LYS PRO LEU ALA ASN LEU LYS ASN LEU GLY SEQRES 8 B 289 TRP LEU PHE LEU ASP GLU ASN LYS VAL LYS ASP LEU SER SEQRES 9 B 289 SER LEU LYS ASP LEU LYS LYS LEU LYS SER LEU SER LEU SEQRES 10 B 289 GLU HIS ASN GLY ILE SER ASP ILE ASN GLY LEU VAL HIS SEQRES 11 B 289 LEU PRO GLN LEU GLU SER LEU TYR LEU GLY ASN ASN LYS SEQRES 12 B 289 ILE THR ASP ILE THR VAL LEU SER ARG LEU THR LYS LEU SEQRES 13 B 289 ASP THR LEU SER LEU GLU ASP ASN GLN ILE ARG ARG ILE SEQRES 14 B 289 VAL PRO LEU ALA ARG LEU THR LYS LEU GLN ASN LEU TYR SEQRES 15 B 289 LEU SER LYS ASN HIS ILE SER ASP LEU ARG ALA LEU ARG SEQRES 16 B 289 GLY LEU LYS ASN LEU ASP VAL LEU GLU LEU PHE SER GLN SEQRES 17 B 289 GLU ALA LEU ASN LYS PRO ILE ASN HIS GLN SER ASN LEU SEQRES 18 B 289 VAL VAL PRO ASN THR VAL LYS ASN THR ASP GLY SER LEU SEQRES 19 B 289 VAL THR PRO GLU ILE ILE SER ASP ASP GLY ASP TYR GLU SEQRES 20 B 289 LYS PRO ASN VAL LYS TRP HIS LEU PRO GLU PHE THR ASN SEQRES 21 B 289 GLU VAL SER PHE ILE PHE TYR GLN PRO VAL THR ILE GLY SEQRES 22 B 289 LYS ALA LYS ALA ARG PHE HIS GLY ARG VAL THR GLN PRO SEQRES 23 B 289 LEU LYS GLU FORMUL 3 HOH *369(H2 O) HELIX 1 1 ILE A 44 PHE A 48 1 5 HELIX 2 2 ASP A 50 LEU A 61 1 12 HELIX 3 3 THR A 71 SER A 77 1 7 HELIX 4 4 ILE A 113 ALA A 117 5 5 HELIX 5 5 LEU A 135 LYS A 139 5 5 HELIX 6 6 ILE A 179 LEU A 185 5 7 HELIX 7 7 ILE A 201 ALA A 205 5 5 HELIX 8 8 LEU A 223 ARG A 227 5 5 HELIX 9 9 ILE B 44 PHE B 48 1 5 HELIX 10 10 ASP B 50 LEU B 61 1 12 HELIX 11 11 THR B 71 SER B 77 1 7 HELIX 12 12 ILE B 113 ALA B 117 5 5 HELIX 13 13 LEU B 135 LYS B 139 5 5 HELIX 14 14 ILE B 179 LEU B 185 5 7 HELIX 15 15 ILE B 201 ALA B 205 5 5 HELIX 16 16 LEU B 223 ARG B 227 5 5 SHEET 1 AA 2 THR A 42 PRO A 43 0 SHEET 2 AA 2 ALA A 69 VAL A 70 -1 O VAL A 70 N THR A 42 SHEET 1 AB 8 GLN A 80 ILE A 82 0 SHEET 2 AB 8 LYS A 102 PHE A 104 1 O LYS A 102 N ILE A 81 SHEET 3 AB 8 LEU A 125 PHE A 126 1 N PHE A 126 O LEU A 103 SHEET 4 AB 8 SER A 146 SER A 148 1 O SER A 146 N LEU A 125 SHEET 5 AB 8 SER A 168 TYR A 170 1 O SER A 168 N LEU A 147 SHEET 6 AB 8 THR A 190 SER A 192 1 O THR A 190 N LEU A 169 SHEET 7 AB 8 ASN A 212 TYR A 214 1 O ASN A 212 N LEU A 191 SHEET 8 AB 8 VAL A 234 GLU A 236 1 O VAL A 234 N LEU A 213 SHEET 1 AC 3 ALA A 242 LEU A 243 0 SHEET 2 AC 3 VAL A 315 LYS A 320 1 N THR A 316 O ALA A 242 SHEET 3 AC 3 ILE A 247 ASN A 248 1 O ILE A 247 N LYS A 320 SHEET 1 AD 2 ALA A 242 LEU A 243 0 SHEET 2 AD 2 VAL A 315 LYS A 320 1 N THR A 316 O ALA A 242 SHEET 1 AE 3 ASN A 252 PRO A 256 0 SHEET 2 AE 3 ASN A 282 HIS A 286 -1 O VAL A 283 N VAL A 255 SHEET 3 AE 3 TYR A 278 GLU A 279 -1 O GLU A 279 N ASN A 282 SHEET 1 AF 2 GLN A 300 THR A 303 0 SHEET 2 AF 2 LYS A 308 PHE A 311 -1 O ALA A 309 N VAL A 302 SHEET 1 BA 2 THR B 42 PRO B 43 0 SHEET 2 BA 2 ALA B 69 VAL B 70 -1 O VAL B 70 N THR B 42 SHEET 1 BB 8 GLN B 80 ILE B 82 0 SHEET 2 BB 8 LYS B 102 PHE B 104 1 O LYS B 102 N ILE B 81 SHEET 3 BB 8 LEU B 125 PHE B 126 1 N PHE B 126 O LEU B 103 SHEET 4 BB 8 SER B 146 SER B 148 1 O SER B 146 N LEU B 125 SHEET 5 BB 8 SER B 168 TYR B 170 1 O SER B 168 N LEU B 147 SHEET 6 BB 8 THR B 190 SER B 192 1 O THR B 190 N LEU B 169 SHEET 7 BB 8 ASN B 212 TYR B 214 1 O ASN B 212 N LEU B 191 SHEET 8 BB 8 VAL B 234 GLU B 236 1 O VAL B 234 N LEU B 213 SHEET 1 BC 3 ALA B 242 LEU B 243 0 SHEET 2 BC 3 VAL B 315 LYS B 320 1 N THR B 316 O ALA B 242 SHEET 3 BC 3 ILE B 247 ASN B 248 1 O ILE B 247 N LYS B 320 SHEET 1 BD 2 ALA B 242 LEU B 243 0 SHEET 2 BD 2 VAL B 315 LYS B 320 1 N THR B 316 O ALA B 242 SHEET 1 BE 3 ASN B 252 PRO B 256 0 SHEET 2 BE 3 ASN B 282 HIS B 286 -1 O VAL B 283 N VAL B 255 SHEET 3 BE 3 TYR B 278 GLU B 279 -1 O GLU B 279 N ASN B 282 SHEET 1 BF 2 GLN B 300 THR B 303 0 SHEET 2 BF 2 LYS B 308 PHE B 311 -1 O ALA B 309 N VAL B 302 CISPEP 1 LYS A 280 PRO A 281 0 16.06 CISPEP 2 LYS B 280 PRO B 281 0 14.88 CRYST1 38.700 57.450 64.300 102.99 90.21 93.56 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025840 0.001608 0.000469 0.00000 SCALE2 0.000000 0.017440 0.004036 0.00000 SCALE3 0.000000 0.000000 0.015963 0.00000 MTRIX1 1 0.999910 -0.010730 0.008010 -19.40990 1 MTRIX2 1 -0.010710 -0.999940 -0.002640 -18.48323 1 MTRIX3 1 0.008040 0.002560 -0.999960 -28.31996 1