HEADER TRANSFERASE 31-AUG-09 2WR8 TITLE STRUCTURE OF PYROCOCCUS HORIKOSHII SAM HYDROXIDE ADENOSYLTRANSFERASE TITLE 2 IN COMPLEX WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN PH0463; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SAM HYDROXIDE ADENOSYLTRANSFERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 C43(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSFERASE, SAM, SAM HYDROXIDE ADENOSYLTRANSFERASE (DUF-62), SN2, KEYWDS 2 WATER ACTIVATION EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MCMAHON,H.DENG,D.O'HAGAN,K.A.JOHNSON,J.H.NAISMITH REVDAT 3 20-DEC-23 2WR8 1 REMARK REVDAT 2 13-JUL-11 2WR8 1 VERSN REVDAT 1 22-SEP-09 2WR8 0 JRNL AUTH H.DENG,S.A.MCMAHON,A.S.EUSTAQUIO,B.S.MOORE,J.H.NAISMITH, JRNL AUTH 2 D.O'HAGAN JRNL TITL MECHANISTIC INSIGHTS INTO WATER ACTIVATION IN SAM HYDROXIDE JRNL TITL 2 ADENOSYLTRANSFERASE (DUF-62). JRNL REF CHEMBIOCHEM V. 10 2455 2009 JRNL REFN ISSN 1439-4227 JRNL PMID 19739191 JRNL DOI 10.1002/CBIC.200900369 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1137 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.57000 REMARK 3 B22 (A**2) : -1.57000 REMARK 3 B33 (A**2) : 2.35000 REMARK 3 B12 (A**2) : -0.78000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.293 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2109 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1440 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2861 ; 1.623 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3506 ; 0.959 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 6.654 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;36.946 ;23.933 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;13.528 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2291 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 399 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 380 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1460 ; 0.211 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1007 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1095 ; 0.109 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 90 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.266 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1675 ; 1.146 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 527 ; 0.261 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2095 ; 1.301 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 947 ; 2.331 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 765 ; 3.117 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 162 REMARK 3 RESIDUE RANGE : A 163 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1890 -27.6030 2.2070 REMARK 3 T TENSOR REMARK 3 T11: -0.1307 T22: -0.1255 REMARK 3 T33: -0.2018 T12: -0.0115 REMARK 3 T13: 0.0349 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.8014 L22: 1.9108 REMARK 3 L33: 0.8716 L12: 0.1620 REMARK 3 L13: 0.5215 L23: -0.2617 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.1771 S13: 0.1009 REMARK 3 S21: -0.0480 S22: 0.0446 S23: -0.2498 REMARK 3 S31: -0.0885 S32: 0.1196 S33: -0.0321 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1290040895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 OPTICS : TORODIAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1WU8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19.83% PEG 6000, 0.26M KCL, 0.1M MOPS REMARK 280 PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.78050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.92583 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.56167 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 32.78050 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 18.92583 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.56167 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 32.78050 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 18.92583 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.56167 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.85166 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.12333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.85166 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.12333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.85166 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.12333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -32.78050 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -56.77749 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 32.78050 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -56.77749 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2008 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2009 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 73 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2048 O HOH A 2050 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 147 CD GLU A 147 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 223 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 34 -67.85 -94.91 REMARK 500 ASP A 68 59.55 -143.44 REMARK 500 PHE A 126 67.48 -103.42 REMARK 500 ILE A 131 -60.66 -138.21 REMARK 500 ASN A 187 48.15 -78.00 REMARK 500 TYR A 229 -153.21 -111.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1257 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WU8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROJECT PH0463 FROM PYROCOCCUSHORIKOSHII OT3 DBREF 2WR8 A -2 0 PDB 2WR8 2WR8 -2 0 DBREF 2WR8 A 1 256 UNP O58212 O58212_PYRHO 1 256 SEQRES 1 A 259 GLY SER HIS MET ILE THR LEU THR THR ASP PHE GLY LEU SEQRES 2 A 259 LYS GLY PRO TYR VAL GLY GLU MET LYS VAL ALA MET LEU SEQRES 3 A 259 ARG ILE ASN PRO ASN ALA LYS ILE VAL ASP VAL THR HIS SEQRES 4 A 259 SER VAL THR ARG HIS SER ILE LEU GLU GLY SER PHE VAL SEQRES 5 A 259 MET GLU GLN VAL VAL LYS TYR SER PRO LYS GLY THR VAL SEQRES 6 A 259 HIS VAL GLY VAL ILE ASP PRO GLY VAL GLY THR GLU ARG SEQRES 7 A 259 ARG ALA ILE VAL ILE GLU GLY ASP GLN TYR LEU VAL VAL SEQRES 8 A 259 PRO ASP ASN GLY LEU ALA THR LEU PRO LEU LYS HIS ILE SEQRES 9 A 259 LYS VAL LYS SER VAL TYR GLU ILE ILE PRO ASP LYS ILE SEQRES 10 A 259 ARG LYS PHE THR GLY TRP GLU ILE SER SER THR PHE HIS SEQRES 11 A 259 GLY ARG ASP ILE PHE GLY PRO ALA GLY ALA LEU ILE GLU SEQRES 12 A 259 LYS GLY ILE HIS PRO GLU GLU PHE GLY ARG GLU ILE PRO SEQRES 13 A 259 VAL ASP SER ILE VAL LYS LEU ASN VAL GLU PRO ARG LYS SEQRES 14 A 259 GLU GLY ASP VAL TRP ILE LEU LYS VAL ILE TYR ILE ASP SEQRES 15 A 259 ASP PHE GLY ASN VAL ILE LEU ASN LEU GLU ASN TYR GLU SEQRES 16 A 259 LYS PRO ARG THR VAL GLU LEU LEU ASP PHE ASN LEU ARG SEQRES 17 A 259 LEU PRO TYR LEU GLU THR TYR GLY LEU VAL GLU LYS GLY SEQRES 18 A 259 GLU MET LEU ALA LEU PRO GLY SER HIS ASP TYR LEU GLU SEQRES 19 A 259 ILE ALA VAL ASN MET GLY SER ALA ALA GLU ARG LEU ASN SEQRES 20 A 259 VAL LYS VAL GLY ASP GLU LEU ARG VAL ARG LEU LEU HET SAH A1257 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 HOH *115(H2 O) HELIX 1 1 GLU A 17 ASN A 26 1 10 HELIX 2 2 SER A 47 SER A 57 1 11 HELIX 3 3 LEU A 96 ILE A 101 5 6 HELIX 4 4 ILE A 110 THR A 118 1 9 HELIX 5 5 HIS A 144 PHE A 148 5 5 HELIX 6 6 PRO A 153 ILE A 157 5 5 HELIX 7 7 SER A 238 ASN A 244 1 7 SHEET 1 AA 7 LYS A 30 THR A 35 0 SHEET 2 AA 7 MET A 1 THR A 5 1 O ILE A 2 N VAL A 32 SHEET 3 AA 7 VAL A 62 VAL A 64 1 O VAL A 62 N THR A 3 SHEET 4 AA 7 TYR A 85 PRO A 89 1 O TYR A 85 N HIS A 63 SHEET 5 AA 7 ALA A 77 GLU A 81 -1 O ILE A 78 N VAL A 88 SHEET 6 AA 7 SER A 105 GLU A 108 -1 O SER A 105 N GLU A 81 SHEET 7 AA 7 GLU A 151 ILE A 152 -1 O ILE A 152 N VAL A 106 SHEET 1 AB 5 ARG A 165 LYS A 166 0 SHEET 2 AB 5 TRP A 171 ILE A 178 -1 O ILE A 172 N ARG A 165 SHEET 3 AB 5 GLU A 250 LEU A 256 -1 O LEU A 251 N LEU A 173 SHEET 4 AB 5 THR A 196 LEU A 199 -1 O THR A 196 N LEU A 256 SHEET 5 AB 5 LEU A 204 PRO A 207 -1 O LEU A 204 N LEU A 199 SHEET 1 AC 2 ARG A 165 LYS A 166 0 SHEET 2 AC 2 TRP A 171 ILE A 178 -1 O ILE A 172 N ARG A 165 SITE 1 AC1 18 ASP A 7 TYR A 14 HIS A 41 ASP A 68 SITE 2 AC1 18 THR A 125 PHE A 126 ASP A 179 PHE A 181 SITE 3 AC1 18 ASN A 183 TYR A 212 SER A 226 HIS A 227 SITE 4 AC1 18 GLU A 231 VAL A 234 ASN A 235 MET A 236 SITE 5 AC1 18 HOH A2069 HOH A2071 CRYST1 65.561 65.561 142.685 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015253 0.008806 0.000000 0.00000 SCALE2 0.000000 0.017613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007008 0.00000