HEADER TRANSFERASE 01-SEP-09 2WRM TITLE IDENTIFICATION OF NOVEL ALLOSTERIC INHIBITORS OF HEPATITIS C VIRUS TITLE 2 NS5B POLYMERASE THUMB DOMAIN (SITE II) BY STRUCTURE-BASED DESIGN CAVEAT 2WRM ILE A 23 C-ALPHA IS PLANAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NS5B, RESIDUES 2420-2955; COMPND 5 SYNONYM: P68; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 STRAIN: ISOLATE BK; SOURCE 5 VARIANT: GENOTYPE 1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: T7; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7.7; SOURCE 11 OTHER_DETAILS: GENBANK ACCESSION NUMBER AB016785 KEYWDS TRANSFERASE, NON-NUCLEOSIDE INHIBITOR, NNI, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.DI MARCO REVDAT 3 20-DEC-23 2WRM 1 REMARK REVDAT 2 29-SEP-10 2WRM 1 CAVEAT REMARK HETATM CONECT REVDAT 2 2 1 MASTER REVDAT 1 22-SEP-10 2WRM 0 JRNL AUTH M.E.DI FRANCESCO,S.DI MARCO,V.SUMMA JRNL TITL IDENTIFICATION OF NOVEL ALLOSTERIC INHIBITORS OF HEPATITIS C JRNL TITL 2 VIRUS NS5B POLYMERASE THUMB DOMAIN (SITE II) BY JRNL TITL 3 STRUCTURE-BASED DESIGN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 43553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 629 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -1.29000 REMARK 3 B33 (A**2) : 1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.663 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4143 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3687 ; 0.015 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5620 ; 1.750 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8490 ; 1.343 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 524 ; 6.358 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4598 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 830 ; 0.036 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1148 ; 0.314 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4734 ; 0.271 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2353 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 467 ; 0.225 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.114 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 72 ; 0.277 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2633 ; 0.663 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4221 ; 1.267 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1510 ; 1.765 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1399 ; 2.955 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. FINAL MODEL ENCOMPASS RESIDUES 1-531, RESIDUES 532- REMARK 3 536 ARE NOT IN DENSITY. REMARK 4 REMARK 4 2WRM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1290040957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45650 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2BRK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.38200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.08750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.38200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.08750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 66.76400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.17500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2113 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2173 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 532 REMARK 465 LYS A 533 REMARK 465 LEU A 534 REMARK 465 LYS A 535 REMARK 465 LEU A 536 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 139 SD REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 5 CG2 REMARK 480 ALA A 16 CB REMARK 480 GLU A 18 CD OE2 REMARK 480 LYS A 20 NZ REMARK 480 PRO A 22 C O REMARK 480 ILE A 23 N CA CB CG1 CG2 CD1 REMARK 480 LEU A 26 CD1 CD2 REMARK 480 ASN A 28 CB REMARK 480 ARG A 32 CD NE CZ NH1 NH2 REMARK 480 ARG A 43 CG REMARK 480 LEU A 47 CG CD1 CD2 REMARK 480 LYS A 51 CD CE NZ REMARK 480 LEU A 57 CD1 REMARK 480 LYS A 69 CD CE REMARK 480 LYS A 74 CE REMARK 480 LYS A 79 CD REMARK 480 LYS A 98 NZ REMARK 480 LYS A 100 CG CD CE NZ REMARK 480 LYS A 106 CD CE NZ REMARK 480 ARG A 109 CG CZ NH1 NH2 REMARK 480 LYS A 114 NZ REMARK 480 LYS A 124 NZ REMARK 480 VAL A 131 CG2 REMARK 480 VAL A 147 CG1 REMARK 480 GLN A 148 CG CD OE1 NE2 REMARK 480 PRO A 149 CG CD REMARK 480 GLU A 150 N CA CB CG CD OE1 OE2 REMARK 480 LYS A 151 CD CE NZ REMARK 480 GLY A 152 CA REMARK 480 LYS A 155 CD REMARK 480 ARG A 158 CD NE CZ NH1 NH2 REMARK 480 THR A 181 CG2 REMARK 480 LEU A 182 CD1 REMARK 480 GLN A 184 OE1 NE2 REMARK 480 LYS A 212 NZ REMARK 480 ARG A 222 CD CZ NH2 REMARK 480 LYS A 270 CD CE NZ REMARK 480 GLN A 272 NE2 REMARK 480 LYS A 307 NZ REMARK 480 PRO A 353 CB REMARK 480 SER A 365 OG REMARK 480 LYS A 379 CE NZ REMARK 480 ARG A 401 CG CD NE CZ NH2 REMARK 480 HIS A 402 CB CG CD2 CE1 REMARK 480 PRO A 404 CB CG CD REMARK 480 VAL A 405 O CB CG2 REMARK 480 LEU A 419 CD1 REMARK 480 GLN A 436 NE2 REMARK 480 GLN A 438 OE1 REMARK 480 GLU A 440 CG CD OE1 OE2 REMARK 480 LYS A 441 CG CD CE NZ REMARK 480 ILE A 447 CG2 REMARK 480 TYR A 448 CE1 CE2 CZ REMARK 480 ASN A 483 ND2 REMARK 480 ARG A 490 CD CZ NH1 NH2 REMARK 480 VAL A 494 CG2 REMARK 480 HIS A 502 CE1 REMARK 480 LEU A 512 CD1 REMARK 480 GLN A 514 OE1 REMARK 480 VAL A 530 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 VAL A 494 O HOH A 2597 0.59 REMARK 500 CG LEU A 47 O HOH A 2083 0.62 REMARK 500 ND2 ASN A 483 O HOH A 2591 0.71 REMARK 500 NH2 ARG A 158 O HOH A 2277 0.80 REMARK 500 NH1 ARG A 158 O HOH A 2278 0.92 REMARK 500 NZ LYS A 114 O HOH A 2202 1.00 REMARK 500 CD LYS A 151 N GLY A 152 1.11 REMARK 500 O PRO A 22 O HOH A 2032 1.19 REMARK 500 O PRO A 149 N GLU A 150 1.21 REMARK 500 CD2 LEU A 47 O HOH A 2083 1.23 REMARK 500 NH2 ARG A 222 O HOH A 2357 1.23 REMARK 500 CE1 TYR A 448 O HOH A 2558 1.29 REMARK 500 CD1 LEU A 47 O HOH A 2083 1.30 REMARK 500 OE1 GLN A 184 O HOH A 2311 1.33 REMARK 500 O VAL A 405 N ASN A 406 1.34 REMARK 500 N ILE A 23 O HOH A 2033 1.35 REMARK 500 C PRO A 22 O HOH A 2032 1.39 REMARK 500 C PRO A 22 O HOH A 2033 1.45 REMARK 500 CZ ARG A 158 O HOH A 2277 1.45 REMARK 500 O GLN A 272 O HOH A 2405 1.46 REMARK 500 CA ILE A 23 O HOH A 2033 1.47 REMARK 500 NZ LYS A 124 O HOH A 2221 1.47 REMARK 500 O PRO A 22 O HOH A 2033 1.54 REMARK 500 O VAL A 499 NE2 HIS A 502 1.55 REMARK 500 C VAL A 499 CD2 HIS A 502 1.57 REMARK 500 O TRP A 500 ND1 HIS A 502 1.61 REMARK 500 O VAL A 116 ND1 HIS A 120 1.63 REMARK 500 CG ARG A 401 O HOH A 2528 1.65 REMARK 500 N TRP A 500 CD2 HIS A 502 1.65 REMARK 500 CZ ARG A 222 O HOH A 2357 1.72 REMARK 500 CD2 HIS A 120 O HOH A 2213 1.73 REMARK 500 OE2 GLU A 440 O HOH A 2549 1.74 REMARK 500 NE2 GLN A 184 O HOH A 2311 1.78 REMARK 500 CE1 HIS A 502 O HOH A 2601 1.79 REMARK 500 CD ARG A 222 O HOH A 2357 1.81 REMARK 500 O ALA A 509 O HOH A 2607 1.82 REMARK 500 CD2 HIS A 467 O HOH A 2577 1.84 REMARK 500 O VAL A 499 CD2 HIS A 502 1.84 REMARK 500 NE2 HIS A 118 O HOH A 2209 1.84 REMARK 500 CD2 HIS A 118 O HOH A 2209 1.93 REMARK 500 CA TRP A 500 CD2 HIS A 502 1.97 REMARK 500 C TRP A 500 CD2 HIS A 502 1.98 REMARK 500 CZ ARG A 158 O HOH A 2278 1.98 REMARK 500 CD ARG A 158 O HOH A 2278 2.00 REMARK 500 CD2 HIS A 120 O HOH A 2212 2.02 REMARK 500 C TRP A 500 ND1 HIS A 502 2.05 REMARK 500 CD LYS A 100 O HOH A 2187 2.08 REMARK 500 CB VAL A 494 O HOH A 2597 2.08 REMARK 500 CB HIS A 374 CE1 HIS A 475 2.08 REMARK 500 NE2 GLN A 148 O HOH A 2266 2.10 REMARK 500 REMARK 500 THIS ENTRY HAS 58 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2167 O HOH A 2468 3556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 16 CA ALA A 16 CB -0.208 REMARK 500 GLU A 18 CG GLU A 18 CD 0.402 REMARK 500 PRO A 22 CA PRO A 22 C 1.092 REMARK 500 ILE A 23 CA ILE A 23 C 0.486 REMARK 500 ASN A 28 CB ASN A 28 CG 0.810 REMARK 500 ARG A 32 CD ARG A 32 NE -0.510 REMARK 500 ARG A 32 NE ARG A 32 CZ 0.578 REMARK 500 ARG A 32 CZ ARG A 32 NH1 0.201 REMARK 500 ARG A 43 CG ARG A 43 CD 0.717 REMARK 500 LYS A 51 CG LYS A 51 CD -0.386 REMARK 500 LYS A 51 CE LYS A 51 NZ 0.447 REMARK 500 LYS A 69 CE LYS A 69 NZ -0.629 REMARK 500 LYS A 74 CE LYS A 74 NZ 0.366 REMARK 500 LYS A 79 CG LYS A 79 CD 0.269 REMARK 500 LYS A 79 CD LYS A 79 CE -0.284 REMARK 500 ARG A 109 CG ARG A 109 CD 1.472 REMARK 500 ARG A 109 NE ARG A 109 CZ 0.925 REMARK 500 ARG A 109 CZ ARG A 109 NH2 -0.119 REMARK 500 LYS A 124 CE LYS A 124 NZ 3.290 REMARK 500 VAL A 147 CB VAL A 147 CG1 -0.547 REMARK 500 PRO A 149 CB PRO A 149 CG -0.490 REMARK 500 PRO A 149 CD PRO A 149 N -0.177 REMARK 500 PRO A 149 C GLU A 150 N -0.484 REMARK 500 GLU A 150 CA GLU A 150 C 3.964 REMARK 500 LYS A 151 CG LYS A 151 CD 0.637 REMARK 500 GLY A 152 N GLY A 152 CA 2.721 REMARK 500 GLY A 152 CA GLY A 152 C 0.941 REMARK 500 LYS A 155 CD LYS A 155 CE 0.948 REMARK 500 ARG A 158 NE ARG A 158 CZ 0.092 REMARK 500 GLN A 184 CD GLN A 184 OE1 1.739 REMARK 500 GLN A 184 CD GLN A 184 NE2 1.426 REMARK 500 LYS A 212 CE LYS A 212 NZ 0.357 REMARK 500 ARG A 222 CD ARG A 222 NE 6.099 REMARK 500 ARG A 222 NE ARG A 222 CZ 4.043 REMARK 500 ARG A 222 CZ ARG A 222 NH1 0.875 REMARK 500 LYS A 270 CG LYS A 270 CD -0.435 REMARK 500 LYS A 270 CD LYS A 270 CE 0.222 REMARK 500 GLN A 272 CD GLN A 272 NE2 0.346 REMARK 500 LYS A 307 CE LYS A 307 NZ -0.385 REMARK 500 PRO A 353 CB PRO A 353 CG -0.442 REMARK 500 SER A 365 CB SER A 365 OG -0.194 REMARK 500 ARG A 401 CZ ARG A 401 NH1 3.649 REMARK 500 HIS A 402 CG HIS A 402 ND1 0.178 REMARK 500 HIS A 402 ND1 HIS A 402 CE1 0.409 REMARK 500 HIS A 402 CE1 HIS A 402 NE2 0.733 REMARK 500 HIS A 402 NE2 HIS A 402 CD2 -0.376 REMARK 500 PRO A 404 CA PRO A 404 CB 0.903 REMARK 500 PRO A 404 CD PRO A 404 N 0.992 REMARK 500 VAL A 405 CA VAL A 405 CB -0.784 REMARK 500 VAL A 405 CB VAL A 405 CG1 13.200 REMARK 500 REMARK 500 THIS ENTRY HAS 76 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 16 CB - CA - C ANGL. DEV. = 19.7 DEGREES REMARK 500 GLU A 18 OE1 - CD - OE2 ANGL. DEV. = -14.0 DEGREES REMARK 500 GLU A 18 CG - CD - OE1 ANGL. DEV. = 29.9 DEGREES REMARK 500 GLU A 18 CG - CD - OE2 ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO A 22 CB - CA - C ANGL. DEV. = 26.2 DEGREES REMARK 500 PRO A 22 N - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 ILE A 23 CB - CA - C ANGL. DEV. = -26.9 DEGREES REMARK 500 ILE A 23 N - CA - C ANGL. DEV. = 49.7 DEGREES REMARK 500 ILE A 23 CA - C - O ANGL. DEV. = -82.8 DEGREES REMARK 500 ILE A 23 CA - C - N ANGL. DEV. = 16.5 DEGREES REMARK 500 ASN A 28 CB - CG - OD1 ANGL. DEV. = -53.8 DEGREES REMARK 500 ASN A 28 CB - CG - ND2 ANGL. DEV. = -59.8 DEGREES REMARK 500 ARG A 32 CD - NE - CZ ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG A 32 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 32 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS A 51 CB - CG - CD ANGL. DEV. = 25.2 DEGREES REMARK 500 ASP A 55 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU A 57 CB - CG - CD1 ANGL. DEV. = 13.0 DEGREES REMARK 500 LYS A 69 CB - CG - CD ANGL. DEV. = 18.2 DEGREES REMARK 500 LYS A 69 CD - CE - NZ ANGL. DEV. = -23.4 DEGREES REMARK 500 LYS A 79 CG - CD - CE ANGL. DEV. = 32.0 DEGREES REMARK 500 LYS A 79 CD - CE - NZ ANGL. DEV. = 50.3 DEGREES REMARK 500 ARG A 109 CB - CG - CD ANGL. DEV. = -32.9 DEGREES REMARK 500 ARG A 109 CG - CD - NE ANGL. DEV. = -50.1 DEGREES REMARK 500 ARG A 109 CD - NE - CZ ANGL. DEV. = -99.5 DEGREES REMARK 500 ARG A 109 NH1 - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = 9.2 DEGREES REMARK 500 LYS A 124 CD - CE - NZ ANGL. DEV. = -73.0 DEGREES REMARK 500 VAL A 131 CG1 - CB - CG2 ANGL. DEV. = 32.0 DEGREES REMARK 500 VAL A 147 CA - CB - CG1 ANGL. DEV. = 20.3 DEGREES REMARK 500 PRO A 149 CA - N - CD ANGL. DEV. = -11.7 DEGREES REMARK 500 PRO A 149 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 PRO A 149 CA - C - N ANGL. DEV. = 32.5 DEGREES REMARK 500 PRO A 149 O - C - N ANGL. DEV. = -55.0 DEGREES REMARK 500 GLU A 150 C - N - CA ANGL. DEV. = 20.7 DEGREES REMARK 500 GLU A 150 CB - CA - C ANGL. DEV. = -27.9 DEGREES REMARK 500 GLU A 150 CA - C - O ANGL. DEV. = -21.5 DEGREES REMARK 500 LYS A 151 CB - CG - CD ANGL. DEV. = -22.2 DEGREES REMARK 500 LYS A 151 CG - CD - CE ANGL. DEV. = -62.8 DEGREES REMARK 500 GLY A 152 C - N - CA ANGL. DEV. = 21.8 DEGREES REMARK 500 GLY A 152 CA - C - O ANGL. DEV. = -70.2 DEGREES REMARK 500 LYS A 155 CB - CG - CD ANGL. DEV. = 20.5 DEGREES REMARK 500 LYS A 155 CD - CE - NZ ANGL. DEV. = -45.9 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = -19.8 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = 9.6 DEGREES REMARK 500 LEU A 182 CD1 - CG - CD2 ANGL. DEV. = -25.7 DEGREES REMARK 500 GLN A 184 OE1 - CD - NE2 ANGL. DEV. = -75.6 DEGREES REMARK 500 GLN A 184 CG - CD - OE1 ANGL. DEV. = -35.5 DEGREES REMARK 500 GLN A 184 CG - CD - NE2 ANGL. DEV. = -22.8 DEGREES REMARK 500 LYS A 212 CD - CE - NZ ANGL. DEV. = -35.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 115 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 161.77 175.77 REMARK 500 ALA A 25 -71.73 -46.50 REMARK 500 VAL A 131 -51.51 -126.86 REMARK 500 THR A 181 -31.84 -132.19 REMARK 500 LEU A 260 -58.59 -134.74 REMARK 500 SER A 367 17.67 53.50 REMARK 500 SER A 473 17.59 -144.89 REMARK 500 ARG A 501 -73.48 -54.15 REMARK 500 HIS A 502 -71.63 -8.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 23 ASN A 24 -96.06 REMARK 500 GLU A 150 LYS A 151 73.40 REMARK 500 LYS A 151 GLY A 152 -126.52 REMARK 500 GLY A 152 GLY A 153 -147.06 REMARK 500 ARG A 501 HIS A 502 145.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 109 0.17 SIDE CHAIN REMARK 500 ARG A 158 0.08 SIDE CHAIN REMARK 500 GLN A 184 0.50 SIDE CHAIN REMARK 500 ARG A 222 0.39 SIDE CHAIN REMARK 500 ARG A 401 0.22 SIDE CHAIN REMARK 500 HIS A 402 0.23 SIDE CHAIN REMARK 500 GLN A 438 0.14 SIDE CHAIN REMARK 500 TYR A 448 0.12 SIDE CHAIN REMARK 500 HIS A 467 0.33 SIDE CHAIN REMARK 500 ASN A 483 0.17 SIDE CHAIN REMARK 500 ARG A 490 0.31 SIDE CHAIN REMARK 500 HIS A 502 0.70 SIDE CHAIN REMARK 500 GLN A 514 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 23 66.94 REMARK 500 PRO A 149 -63.19 REMARK 500 GLU A 150 -21.79 REMARK 500 GLY A 152 -47.11 REMARK 500 VAL A 405 54.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2079 DISTANCE = 7.47 ANGSTROMS REMARK 525 HOH A2093 DISTANCE = 6.07 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ3 A 1534 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QQ3 A 1532 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QQ3 A 1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QQ3 A 1534 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NHU RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH NON-NUCLEOSIDE REMARK 900 ANALOGUE INHIBITOR REMARK 900 RELATED ID: 2I1R RELATED DB: PDB REMARK 900 NOVEL THIAZOLONES AS HCV NS5B POLYMERASE INHIBITORS:FURTHER DESIGNS, REMARK 900 SYNTHESIS, SAR AND X-RAY COMPLEX STRUCTURE REMARK 900 RELATED ID: 2WCX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE IN COMPLEX REMARK 900 WITH THIENOPYRROLE- BASED FINGER-LOOP INHIBITORS REMARK 900 RELATED ID: 1JXP RELATED DB: PDB REMARK 900 BK STRAIN HEPATITIS C VIRUS (HCV) NS3-NS4A REMARK 900 RELATED ID: 1GX6 RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH UTP AND MANGANESE REMARK 900 RELATED ID: 2JC1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH REMARK 900 INHIBITOR SB698223 REMARK 900 RELATED ID: 8OHM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBONUCLEIC ACID HELICASE FROM GENOTYPE 1B REMARK 900 HEPATITIS C VIRUS: MECHANISM OF UNWINDING DUPLEX RIBONUCLEIC ACID REMARK 900 RELATED ID: 1C2P RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS NS5B RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC ACID REMARK 900 POLYMERASE REMARK 900 RELATED ID: 1A1Q RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS NS3 PROTEINASE REMARK 900 RELATED ID: 1BT7 RELATED DB: PDB REMARK 900 THE SOLUTION NMR STRUCTURE OF THE N- TERMINAL PROTEASEDOMAIN OF THE REMARK 900 HEPATITIS C VIRUS (HCV) NS3-PROTEIN, FROM BKSTRAIN, 20 STRUCTURES REMARK 900 RELATED ID: 1CU1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ENZYME COMPLEX FROM HEPATITIS C VIRUS REMARK 900 RELATED ID: 1NS3 RELATED DB: PDB REMARK 900 STRUCTURE OF HCV PROTEASE (BK STRAIN) REMARK 900 RELATED ID: 2JC0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH REMARK 900 INHIBITOR SB655264 REMARK 900 RELATED ID: 2AX1 RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS NS5B RNA POLYMERASE IN COMPLEX WITH ACOVALENT REMARK 900 INHIBITOR (5EE) REMARK 900 RELATED ID: 2WHO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE FROM 1B REMARK 900 GENOTYPE IN COMPLEX WITH A NON-NUCLEOSIDE INHIBITOR REMARK 900 RELATED ID: 1NHV RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH NON-NUCLEOSIDE REMARK 900 ANALOGUE INHIBITOR REMARK 900 RELATED ID: 1CSJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC REMARK 900 ACID POLYMERASE OF HEPATITIS C VIRUS REMARK 900 RELATED ID: 1GX5 RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH GTP AND MANGANESE REMARK 900 RELATED ID: 2BRK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH REMARK 900 AN ALLOSTERIC INHIBITOR (COMPOUND 1) REMARK 900 RELATED ID: 2BRL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH REMARK 900 AN ALLOSTERIC INHIBITOR (COMPOUND 2) REMARK 900 RELATED ID: 2AWZ RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS NS5B RNA POLYMERASE IN COMPLEX WITH ACOVALENT REMARK 900 INHIBITOR (5H) REMARK 900 RELATED ID: 2AX0 RELATED DB: PDB REMARK 900 HEPATITIS C VIRUS NS5B RNA POLYMERASE IN COMPLEX WITH ACOVALENT REMARK 900 INHIBITOR (5X) REMARK 900 RELATED ID: 1QUV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID DIRECTED RIBONUCLEIC ACID REMARK 900 POLYMERASE OF HEPATITIS C VIRUS REMARK 900 RELATED ID: 1OS5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HCV NS5B RNA POLYMERASE COMPLEXED WITHA NOVEL REMARK 900 NON-COMPETITIVE INHIBITOR. REMARK 999 REMARK 999 SEQUENCE REMARK 999 NS5B PROTEIN, GENOTYPE 1B AND STRAIN BK, LACKING THE C- REMARK 999 TERMINAL 55 AMINO ACIDS. TOTAL AMINO ACIDS 535, UNIPROT REMARK 999 REFERENCE P26663, 2420-2955 DBREF 2WRM A 1 536 UNP P26663 POLG_HCVBK 2420 2955 SEQRES 1 A 536 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 A 536 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN ALA LEU SEQRES 3 A 536 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 A 536 THR THR SER ARG SER ALA GLY LEU ARG GLN LYS LYS VAL SEQRES 5 A 536 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 A 536 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 A 536 LYS ALA LYS LEU LEU SER VAL GLU GLU ALA CYS LYS LEU SEQRES 8 A 536 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 A 536 ALA LYS ASP VAL ARG ASN LEU SER SER LYS ALA VAL ASN SEQRES 10 A 536 HIS ILE HIS SER VAL TRP LYS ASP LEU LEU GLU ASP THR SEQRES 11 A 536 VAL THR PRO ILE ASP THR THR ILE MET ALA LYS ASN GLU SEQRES 12 A 536 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 A 536 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 A 536 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 A 536 PRO GLN VAL VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 A 536 SER PRO GLY GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 A 536 LYS SER LYS LYS ASN PRO MET GLY PHE SER TYR ASP THR SEQRES 18 A 536 ARG CYS PHE ASP SER THR VAL THR GLU ASN ASP ILE ARG SEQRES 19 A 536 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 A 536 GLU ALA ARG GLN ALA ILE LYS SER LEU THR GLU ARG LEU SEQRES 21 A 536 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 A 536 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 A 536 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 A 536 SER ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 A 536 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 A 536 SER ALA GLY THR GLN GLU ASP ALA ALA SER LEU ARG VAL SEQRES 27 A 536 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 A 536 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 A 536 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 A 536 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 A 536 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 A 536 PRO VAL ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 A 536 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 A 536 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLU LYS ALA SEQRES 35 A 536 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 A 536 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 A 536 LEU SER ALA PHE SER LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 A 536 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 A 536 PRO PRO LEU ARG VAL TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 A 536 ARG ALA ARG LEU LEU SER GLN GLY GLY ARG ALA ALA THR SEQRES 41 A 536 CYS GLY LYS TYR LEU PHE ASN TRP ALA VAL LYS THR LYS SEQRES 42 A 536 LEU LYS LEU HET QQ3 A1532 24 HET QQ3 A1533 24 HET QQ3 A1534 21 HETNAM QQ3 (3R)-3-(4-METHYL-1,3-DIOXO-1,3-DIHYDRO-2H-PYRROLO[3,4- HETNAM 2 QQ3 C]QUINOLIN-2-YL)HEXANOIC ACID FORMUL 2 QQ3 3(C18 H18 N2 O4) FORMUL 5 HOH *629(H2 O) HELIX 1 1 ASN A 24 LEU A 31 1 8 HELIX 2 2 HIS A 33 ASN A 35 5 3 HELIX 3 3 THR A 41 ALA A 45 5 5 HELIX 4 4 LEU A 47 THR A 53 1 7 HELIX 5 5 ASP A 61 SER A 76 1 16 HELIX 6 6 SER A 84 LEU A 91 1 8 HELIX 7 7 ALA A 105 ASN A 110 1 6 HELIX 8 8 SER A 112 ASP A 129 1 18 HELIX 9 9 VAL A 167 SER A 180 1 14 HELIX 10 10 THR A 181 MET A 187 1 7 HELIX 11 11 GLN A 199 LYS A 211 1 13 HELIX 12 12 CYS A 223 VAL A 228 1 6 HELIX 13 13 THR A 229 CYS A 243 1 15 HELIX 14 14 ALA A 246 LEU A 260 1 15 HELIX 15 15 ASN A 291 ALA A 306 1 16 HELIX 16 16 THR A 329 TYR A 346 1 18 HELIX 17 17 ASP A 359 ILE A 363 5 5 HELIX 18 18 PRO A 388 ARG A 401 1 14 HELIX 19 19 THR A 418 ILE A 424 1 7 HELIX 20 20 ILE A 424 GLN A 436 1 13 HELIX 21 21 GLU A 455 LEU A 457 5 3 HELIX 22 22 ASP A 458 HIS A 467 1 10 HELIX 23 23 LEU A 469 SER A 473 5 5 HELIX 24 24 GLU A 481 LEU A 492 1 12 HELIX 25 25 PRO A 496 GLN A 514 1 19 HELIX 26 26 PHE A 526 LYS A 531 1 6 SHEET 1 AA 2 VAL A 37 ALA A 39 0 SHEET 2 AA 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AB 3 LEU A 159 PHE A 162 0 SHEET 2 AB 3 THR A 136 ALA A 140 -1 O THR A 137 N PHE A 162 SHEET 3 AB 3 LEU A 266 THR A 267 1 O THR A 267 N ILE A 138 SHEET 1 AC 3 PRO A 214 TYR A 219 0 SHEET 2 AC 3 LEU A 320 GLU A 325 -1 O LEU A 320 N TYR A 219 SHEET 3 AC 3 GLN A 309 VAL A 315 -1 O GLN A 309 N GLU A 325 SHEET 1 AD 2 ASN A 369 HIS A 374 0 SHEET 2 AD 2 ARG A 380 THR A 385 -1 O VAL A 381 N ALA A 373 SHEET 1 AE 2 LEU A 443 GLN A 446 0 SHEET 2 AE 2 CYS A 451 ILE A 454 -1 O TYR A 452 N CYS A 445 SITE 1 AC1 10 ARG A 422 MET A 423 TYR A 477 LEU A 497 SITE 2 AC1 10 ARG A 498 ARG A 501 TRP A 528 HOH A2587 SITE 3 AC1 10 HOH A2624 HOH A2625 SITE 1 AC2 10 SER A 19 THR A 41 ARG A 43 SER A 44 SITE 2 AC2 10 ARG A 154 GLN A 436 GLU A 437 QQ3 A1534 SITE 3 AC2 10 HOH A2080 HOH A2627 SITE 1 AC3 4 GLY A 152 ARG A 154 QQ3 A1533 HOH A2629 CRYST1 66.764 96.175 95.683 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014978 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010451 0.00000