HEADER LYASE 07-SEP-09 2WSJ TITLE CRYSTAL STRUCTURE OF SINGLE POINT MUTANT GLU71SER P-COUMARIC ACID TITLE 2 DECARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-COUMARIC ACID DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 1590; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109(DE3)(PLYSS); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PURI3-PDC KEYWDS CATALYTIC MECHANISM, LACTIC ACID, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.RODRIGUEZ,I.ANGULO,B.DE LAS RIVAS,N.CAMPILLO,J.A.PAEZ,R.MUNOZ, AUTHOR 2 J.M.MANCHENO REVDAT 4 20-DEC-23 2WSJ 1 REMARK LINK REVDAT 3 05-JUL-17 2WSJ 1 REMARK REVDAT 2 10-AUG-11 2WSJ 1 AUTHOR JRNL REMARK MASTER REVDAT 2 2 1 VERSN REVDAT 1 09-FEB-10 2WSJ 0 JRNL AUTH H.RODRIGUEZ,I.ANGULO,B.DE LAS RIVAS,N.CAMPILLO,J.A.PAEZ, JRNL AUTH 2 R.MUNOZ,J.M.MANCHENO JRNL TITL P-COUMARIC ACID DECARBOXYLASE FROM LACTOBACILLUS PLANTARUM: JRNL TITL 2 STRUCTURAL INSIGHTS INTO THE ACTIVE SITE AND DECARBOXYLATION JRNL TITL 3 CATALYTIC MECHANISM. JRNL REF PROTEINS V. 78 1662 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20112419 JRNL DOI 10.1002/PROT.22684 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 66.7 REMARK 3 NUMBER OF REFLECTIONS : 12073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 680 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.344 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3017 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4097 ; 1.198 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.405 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;35.176 ;24.691 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;14.394 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2354 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1454 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1967 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 224 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.026 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.337 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.256 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 0.340 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2834 ; 0.666 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1314 ; 1.180 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1263 ; 1.811 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 176 5 REMARK 3 1 B 2 B 176 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 700 ; 0.17 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 700 ; 0.17 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 756 ; 0.42 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 756 ; 0.42 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 700 ; 0.40 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 700 ; 0.40 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 756 ; 0.95 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 756 ; 0.95 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1290041071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 65.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2W2A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V) PEG 4K 12%(V/V) ISOPROPANOL REMARK 280 0.2 M SODIUM ACETATE 0.1 M TRIS-HCL PH 8 0.1 M BARIUM CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.40550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.37800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.40550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.37800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2080 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 71 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 71 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 177 REMARK 465 LYS A 178 REMARK 465 MET B 1 REMARK 465 ASN B 177 REMARK 465 LYS B 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 132 N PRO A 132 CA 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 -169.48 -162.63 REMARK 500 HIS A 34 13.00 -144.72 REMARK 500 THR A 107 179.31 176.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2005 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A1177 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 O REMARK 620 2 GLU A 103 O 71.5 REMARK 620 3 VAL A 106 O 142.5 76.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1179 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1180 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1181 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1182 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W2B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SINGLE POINT MUTANT TYR20PHE P-COUMARIC ACID REMARK 900 DECARBOXYLASE FROM LACTOBACILLUS PLANTARUM: STRUCTURAL INSIGHTS REMARK 900 INTO THE ACTIVE SITE AND DECARBOXYLATION CATALYTIC MECHANISM REMARK 900 RELATED ID: 2W2A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P-COUMARIC ACID DECARBOXYLASE FROM REMARK 900 LACTOBACILLUS PLANTARUM: STRUCTURAL INSIGHTS INTO THE ACTIVE SITE REMARK 900 AND DECARBOXYLATION CATALYTIC MECHANISM REMARK 900 RELATED ID: 2W2F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SINGLE POINT MUTANT ARG48GLN OF P-COUMARIC REMARK 900 ACID DECARBOXYLASE FROM LACTOBACILLUS PLANTARUM STRUCTURAL INSIGHTS REMARK 900 INTO THE ACTIVE SITE AND DECARBOXYLATION CATALYTIC MECHANISM REMARK 900 RELATED ID: 2GC9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (PC05870A) FROM LACTOBACILLUSPLANTARUM AT 1.70 REMARK 900 A RESOLUTION DBREF 2WSJ A 1 178 UNP Q88RY7 Q88RY7_LACPL 1 178 DBREF 2WSJ B 1 178 UNP Q88RY7 Q88RY7_LACPL 1 178 SEQADV 2WSJ SER A 71 UNP Q88RY7 GLU 71 ENGINEERED MUTATION SEQADV 2WSJ SER B 71 UNP Q88RY7 GLU 71 ENGINEERED MUTATION SEQRES 1 A 178 MET THR LYS THR PHE LYS THR LEU ASP ASP PHE LEU GLY SEQRES 2 A 178 THR HIS PHE ILE TYR THR TYR ASP ASN GLY TRP GLU TYR SEQRES 3 A 178 GLU TRP TYR ALA LYS ASN ASP HIS THR VAL ASP TYR ARG SEQRES 4 A 178 ILE HIS GLY GLY MET VAL ALA GLY ARG TRP VAL THR ASP SEQRES 5 A 178 GLN LYS ALA ASP ILE VAL MET LEU THR GLU GLY ILE TYR SEQRES 6 A 178 LYS ILE SER TRP THR SER PRO THR GLY THR ASP VAL ALA SEQRES 7 A 178 LEU ASP PHE MET PRO ASN GLU LYS LYS LEU HIS GLY THR SEQRES 8 A 178 ILE PHE PHE PRO LYS TRP VAL GLU GLU HIS PRO GLU ILE SEQRES 9 A 178 THR VAL THR TYR GLN ASN GLU HIS ILE ASP LEU MET GLU SEQRES 10 A 178 GLN SER ARG GLU LYS TYR ALA THR TYR PRO LYS LEU VAL SEQRES 11 A 178 VAL PRO GLU PHE ALA ASN ILE THR TYR MET GLY ASP ALA SEQRES 12 A 178 GLY GLN ASN ASN GLU ASP VAL ILE SER GLU ALA PRO TYR SEQRES 13 A 178 LYS GLU MET PRO ASN ASP ILE ARG ASN GLY LYS TYR PHE SEQRES 14 A 178 ASP GLN ASN TYR HIS ARG LEU ASN LYS SEQRES 1 B 178 MET THR LYS THR PHE LYS THR LEU ASP ASP PHE LEU GLY SEQRES 2 B 178 THR HIS PHE ILE TYR THR TYR ASP ASN GLY TRP GLU TYR SEQRES 3 B 178 GLU TRP TYR ALA LYS ASN ASP HIS THR VAL ASP TYR ARG SEQRES 4 B 178 ILE HIS GLY GLY MET VAL ALA GLY ARG TRP VAL THR ASP SEQRES 5 B 178 GLN LYS ALA ASP ILE VAL MET LEU THR GLU GLY ILE TYR SEQRES 6 B 178 LYS ILE SER TRP THR SER PRO THR GLY THR ASP VAL ALA SEQRES 7 B 178 LEU ASP PHE MET PRO ASN GLU LYS LYS LEU HIS GLY THR SEQRES 8 B 178 ILE PHE PHE PRO LYS TRP VAL GLU GLU HIS PRO GLU ILE SEQRES 9 B 178 THR VAL THR TYR GLN ASN GLU HIS ILE ASP LEU MET GLU SEQRES 10 B 178 GLN SER ARG GLU LYS TYR ALA THR TYR PRO LYS LEU VAL SEQRES 11 B 178 VAL PRO GLU PHE ALA ASN ILE THR TYR MET GLY ASP ALA SEQRES 12 B 178 GLY GLN ASN ASN GLU ASP VAL ILE SER GLU ALA PRO TYR SEQRES 13 B 178 LYS GLU MET PRO ASN ASP ILE ARG ASN GLY LYS TYR PHE SEQRES 14 B 178 ASP GLN ASN TYR HIS ARG LEU ASN LYS HET BA A1177 1 HET IPA A1178 4 HET IPA A1179 4 HET IPA A1180 4 HET NA A1181 1 HET NA A1182 1 HET IPA B1177 4 HET IPA B1178 4 HET CL B1179 1 HET NA B1180 1 HET NA B1181 1 HETNAM BA BARIUM ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN IPA 2-PROPANOL FORMUL 3 BA BA 2+ FORMUL 4 IPA 5(C3 H8 O) FORMUL 7 NA 4(NA 1+) FORMUL 11 CL CL 1- FORMUL 14 HOH *189(H2 O) HELIX 1 1 THR A 7 LEU A 12 1 6 HELIX 2 2 PRO A 83 GLU A 85 5 3 HELIX 3 3 PRO A 95 HIS A 101 1 7 HELIX 4 4 PRO A 102 THR A 105 5 4 HELIX 5 5 TYR A 108 GLU A 111 5 4 HELIX 6 6 HIS A 112 TYR A 123 1 12 HELIX 7 7 GLU A 158 ASN A 165 1 8 HELIX 8 8 THR B 7 LEU B 12 1 6 HELIX 9 9 PRO B 83 GLU B 85 5 3 HELIX 10 10 PRO B 95 HIS B 101 1 7 HELIX 11 11 PRO B 102 THR B 105 5 4 HELIX 12 12 TYR B 108 GLU B 111 5 4 HELIX 13 13 HIS B 112 TYR B 123 1 12 HELIX 14 14 GLU B 158 ASN B 165 1 8 SHEET 1 A 9 TRP A 49 LYS A 54 0 SHEET 2 A 9 THR A 35 ILE A 40 -1 N TYR A 38 O VAL A 50 SHEET 3 A 9 GLU A 25 ASN A 32 -1 N TYR A 29 O ASP A 37 SHEET 4 A 9 THR A 14 TYR A 20 -1 N PHE A 16 O TRP A 28 SHEET 5 A 9 LEU A 129 ASP A 142 -1 O GLY A 141 N HIS A 15 SHEET 6 A 9 LYS A 87 PHE A 94 -1 N PHE A 94 O LEU A 129 SHEET 7 A 9 ASP A 76 MET A 82 -1 N ASP A 80 O HIS A 89 SHEET 8 A 9 ILE A 64 THR A 70 -1 N TYR A 65 O PHE A 81 SHEET 9 A 9 ASP A 56 THR A 61 -1 N THR A 61 O ILE A 64 SHEET 1 B 9 TRP B 49 LYS B 54 0 SHEET 2 B 9 THR B 35 ILE B 40 -1 N TYR B 38 O VAL B 50 SHEET 3 B 9 GLU B 25 ASN B 32 -1 N TYR B 29 O ASP B 37 SHEET 4 B 9 THR B 14 TYR B 20 -1 N PHE B 16 O TRP B 28 SHEET 5 B 9 LEU B 129 ASP B 142 -1 O GLY B 141 N HIS B 15 SHEET 6 B 9 LYS B 87 PHE B 94 -1 N GLY B 90 O GLU B 133 SHEET 7 B 9 ASP B 76 MET B 82 -1 N ASP B 80 O HIS B 89 SHEET 8 B 9 ILE B 64 THR B 70 -1 N TYR B 65 O PHE B 81 SHEET 9 B 9 ASP B 56 THR B 61 -1 N THR B 61 O ILE B 64 LINK O ASP A 21 BA BA A1177 4455 1555 3.04 LINK O GLU A 103 BA BA A1177 1555 1555 2.74 LINK O VAL A 106 BA BA A1177 1555 1555 2.84 LINK OE2 GLU B 25 NA NA B1181 1555 1555 2.58 CISPEP 1 TYR A 126 PRO A 127 0 -3.72 CISPEP 2 TYR B 126 PRO B 127 0 -1.81 SITE 1 AC1 3 ASP A 21 GLU A 103 VAL A 106 SITE 1 AC2 8 TRP A 24 TYR A 26 ILE A 40 GLY A 42 SITE 2 AC2 8 GLY A 43 MET A 44 VAL A 45 ALA A 46 SITE 1 AC3 6 TYR A 18 TYR A 20 TYR A 26 TRP A 69 SITE 2 AC3 6 VAL A 77 LEU A 79 SITE 1 AC4 3 TYR A 38 ILE A 40 ARG A 48 SITE 1 AC5 5 ASP A 37 ASN A 147 GLU A 148 VAL A 150 SITE 2 AC5 5 ILE A 151 SITE 1 AC6 5 ASP A 37 ASN A 147 GLU A 148 VAL A 150 SITE 2 AC6 5 ILE A 151 SITE 1 AC7 5 TYR B 18 TYR B 20 TYR B 26 TRP B 69 SITE 2 AC7 5 VAL B 77 SITE 1 AC8 4 TYR B 38 ARG B 48 VAL B 77 HOH B2017 SITE 1 AC9 5 TYR B 38 GLN B 53 SER B 71 PRO B 72 SITE 2 AC9 5 GLN B 109 SITE 1 BC1 6 TYR B 26 ILE B 40 GLY B 42 GLY B 43 SITE 2 BC1 6 MET B 44 VAL B 45 SITE 1 BC2 5 TYR B 18 THR B 19 GLU B 25 THR B 138 SITE 2 BC2 5 ARG B 164 SITE 1 BC3 6 TYR A 38 ARG A 48 GLN A 53 SER A 71 SITE 2 BC3 6 PRO A 72 GLN A 109 CRYST1 108.811 52.756 82.095 90.00 122.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009190 0.000000 0.005841 0.00000 SCALE2 0.000000 0.018955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014433 0.00000