HEADER HYDROLASE 11-SEP-09 2WT3 OBSLTE 23-FEB-10 2WT3 TITLE STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA TITLE 2 NEAPOLITANA IN COMPLEX WITH GLUCOSE: A THERMOSTABLE 3- TITLE 3 DOMAIN REPRESENTATIVE OF GLYCOSIDE HYDROLASE FAMILY 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-GLUCOSIDASE 3B; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA NEAPOLITANA; SOURCE 3 ORGANISM_TAXID: 309803; SOURCE 4 STRAIN: DSM 4359; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-22B; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE, TIM BARREL FOLD, FIBRONECTIN TYPE III FOLD EXPDTA X-RAY DIFFRACTION AUTHOR T.POZZO,E.NORDBERG KARLSSON,D.T.LOGAN REVDAT 2 23-FEB-10 2WT3 1 OBSLTE REVDAT 1 16-FEB-10 2WT3 0 JRNL AUTH T.POZZO,J.LINARES PASTEN,E.NORDBERG KARLSSON, JRNL AUTH 2 D.T.LOGAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF BETA- JRNL TITL 2 GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA: A JRNL TITL 3 THERMOSTABLE 3-DOMAIN REPRESENTATIVE OF GLYCOSIDE JRNL TITL 4 HYDROLASE FAMILY 3 JRNL REF J.MOL.BIOL. 2010 JRNL REFN ESSN 1089-8638 JRNL PMID 20138890 JRNL DOI 10.1016/J.JMB.2010.01.072 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.TURNER,A.PRAMHED,E.KANDERS,M.HEDSTROM, REMARK 1 AUTH 2 E.N.KARLSSON,D.T.LOGAN REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY DIFFRACTION ANALYSIS OF REMARK 1 TITL 3 THERMOTOGA NEAPOLITANA BETA-GLUCOSIDASE B. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 802 2007 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 17768360 REMARK 1 DOI 10.1107/S1744309107040341 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.050 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.719 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.99 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.63 REMARK 3 NUMBER OF REFLECTIONS : 53081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2023 REMARK 3 R VALUE (WORKING SET) : 0.2007 REMARK 3 FREE R VALUE : 0.2318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.7211 - 5.4548 0.95 2699 143 0.1680 0.1881 REMARK 3 2 5.4548 - 4.3356 0.96 2647 141 0.1477 0.1662 REMARK 3 3 4.3356 - 3.7893 0.97 2633 136 0.1569 0.1730 REMARK 3 4 3.7893 - 3.4437 0.97 2641 139 0.1820 0.2046 REMARK 3 5 3.4437 - 3.1973 0.99 2673 142 0.2001 0.2079 REMARK 3 6 3.1973 - 3.0090 0.99 2657 140 0.2168 0.2696 REMARK 3 7 3.0090 - 2.8585 0.99 2662 140 0.2241 0.2895 REMARK 3 8 2.8585 - 2.7342 0.99 2670 141 0.2149 0.2677 REMARK 3 9 2.7342 - 2.6290 0.99 2668 141 0.2190 0.2369 REMARK 3 10 2.6290 - 2.5384 0.99 2652 140 0.2108 0.2653 REMARK 3 11 2.5384 - 2.4591 1.00 2666 140 0.2154 0.2414 REMARK 3 12 2.4591 - 2.3888 1.00 2637 138 0.2233 0.2907 REMARK 3 13 2.3888 - 2.3260 0.99 2613 158 0.2277 0.2896 REMARK 3 14 2.3260 - 2.2693 0.99 2660 139 0.2531 0.3097 REMARK 3 15 2.2693 - 2.2177 1.00 2660 137 0.2595 0.2778 REMARK 3 16 2.2177 - 2.1705 0.99 2640 142 0.2444 0.2842 REMARK 3 17 2.1705 - 2.1271 1.00 2596 151 0.2385 0.2795 REMARK 3 18 2.1271 - 2.0870 1.00 2662 142 0.2636 0.2877 REMARK 3 19 2.0870 - 2.0497 0.99 2652 143 0.2917 0.3139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.341 REMARK 3 B_SOL : 51.198 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.03 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.2947 REMARK 3 B22 (A**2) : 2.4015 REMARK 3 B33 (A**2) : -4.6961 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : -0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5818 REMARK 3 ANGLE : 0.709 7869 REMARK 3 CHIRALITY : 0.050 852 REMARK 3 PLANARITY : 0.003 1029 REMARK 3 DIHEDRAL : 16.574 2177 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:320) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2886 24.8455 -22.0536 REMARK 3 T TENSOR REMARK 3 T11: 0.4136 T22: 0.2743 REMARK 3 T33: 0.2174 T12: -0.1113 REMARK 3 T13: 0.0050 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.0211 L22: 1.5703 REMARK 3 L33: 0.9235 L12: 0.6262 REMARK 3 L13: -0.0197 L23: -0.0737 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: 0.0594 S13: 0.0756 REMARK 3 S21: -0.4496 S22: 0.1054 S23: -0.0392 REMARK 3 S31: -0.3243 S32: 0.1529 S33: -0.0468 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 321:536) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5533 12.9782 -25.5285 REMARK 3 T TENSOR REMARK 3 T11: 0.3296 T22: 0.3327 REMARK 3 T33: 0.5299 T12: 0.0306 REMARK 3 T13: -0.3061 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.3182 L22: 1.9450 REMARK 3 L33: 2.2011 L12: -0.2603 REMARK 3 L13: 0.3601 L23: 0.4960 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: -0.1073 S13: 0.1015 REMARK 3 S21: -0.4468 S22: -0.0069 S23: 0.7435 REMARK 3 S31: -0.2840 S32: -0.4366 S33: 0.1014 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 537:599) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2694 5.8777 -8.6864 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.2419 REMARK 3 T33: 0.2772 T12: -0.0120 REMARK 3 T13: -0.0643 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.2548 L22: 0.5839 REMARK 3 L33: 0.5339 L12: -0.0748 REMARK 3 L13: -0.0374 L23: -0.4700 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.1100 S13: -0.0369 REMARK 3 S21: -0.0265 S22: 0.0263 S23: 0.3460 REMARK 3 S31: 0.0499 S32: -0.1472 S33: 0.0025 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 600:720) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3695 -8.3897 -20.5582 REMARK 3 T TENSOR REMARK 3 T11: 0.3067 T22: 0.2721 REMARK 3 T33: 0.2121 T12: -0.0037 REMARK 3 T13: -0.0004 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 0.3272 L22: 1.8950 REMARK 3 L33: 0.8653 L12: -0.5940 REMARK 3 L13: -0.0973 L23: -0.5764 REMARK 3 S TENSOR REMARK 3 S11: 0.0505 S12: 0.0919 S13: -0.2324 REMARK 3 S21: -0.3864 S22: 0.0432 S23: -0.0446 REMARK 3 S31: 0.3363 S32: 0.2845 S33: -0.0713 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES A AND 418-422 ARE REMARK 3 DISORDERED REMARK 4 REMARK 4 2WT3 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-09. REMARK 100 THE PDBE ID CODE IS EBI-41118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53087 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.05 REMARK 200 RESOLUTION RANGE LOW (A) : 26.70 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.4 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: REFMAC5, PHENIX.REFINE REMARK 200 STARTING MODEL: PDB ENTRY 2WT6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-18 % PEG 3350, 0.2 M NABR, REMARK 280 90MM BIS-TRIS PROPANE PH 7.4. SOAKED IN ADDITIONAL 25% REMARK 280 GLYCEROL, 2% PEG 3350, 10 MM PARANITROPHENYL-BETA-D-GLUCOSIDE REMARK 280 FOR 30 MIN BEFORE DATA COLLECTION. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.15000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.25000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.15000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 418 REMARK 465 SER A 419 REMARK 465 TRP A 420 REMARK 465 GLY A 421 REMARK 465 THR A 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 29 -133.00 56.07 REMARK 500 ASN A 71 64.75 -108.78 REMARK 500 MET A 120 32.79 -145.16 REMARK 500 VAL A 176 -32.14 -131.98 REMARK 500 ASP A 247 -0.36 -146.24 REMARK 500 ASN A 341 88.07 -153.05 REMARK 500 ASN A 431 32.34 -99.42 REMARK 500 ASP A 468 -99.39 -124.04 REMARK 500 GLN A 489 -175.31 -69.18 REMARK 500 TRP A 519 -139.70 49.98 REMARK 500 ASN A 566 65.19 -155.69 REMARK 500 ASP A 575 -130.70 60.34 REMARK 500 ASN A 704 73.07 -114.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 BETA-D-GLUCOSE (GLC): BETA ANOMER REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1722 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1723 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1724 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1725 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC A1726 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WT5 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH ALPHA- REMARK 900 D-GLUCOSE REMARK 900 RELATED ID: 2WT6 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH REMARK 900 GLYCEROL REMARK 900 RELATED ID: 2X41 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH GLUCOSE REMARK 900 RELATED ID: 2X42 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH ALPHA- REMARK 900 D-GLUCOSE REMARK 900 RELATED ID: 2X40 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH REMARK 900 GLYCEROL DBREF 2WT3 A 1 721 UNP Q0GC07 Q0GC07_THENN 1 721 SEQRES 1 A 721 MET GLU LYS VAL ASN GLU ILE LEU SER GLN LEU THR LEU SEQRES 2 A 721 GLU GLU LYS VAL LYS LEU VAL VAL GLY VAL GLY LEU PRO SEQRES 3 A 721 GLY LEU PHE GLY ASN PRO HIS SER ARG VAL ALA GLY ALA SEQRES 4 A 721 ALA GLY GLU THR HIS PRO VAL PRO ARG VAL GLY LEU PRO SEQRES 5 A 721 ALA PHE VAL LEU ALA ASP GLY PRO ALA GLY LEU ARG ILE SEQRES 6 A 721 ASN PRO THR ARG GLU ASN ASP GLU ASN THR TYR TYR THR SEQRES 7 A 721 THR ALA PHE PRO VAL GLU ILE MET LEU ALA SER THR TRP SEQRES 8 A 721 ASN ARG GLU LEU LEU GLU GLU VAL GLY LYS ALA MET GLY SEQRES 9 A 721 GLU GLU VAL ARG GLU TYR GLY VAL ASP VAL LEU LEU ALA SEQRES 10 A 721 PRO ALA MET ASN ILE HIS ARG ASN PRO LEU CYS GLY ARG SEQRES 11 A 721 ASN PHE GLU TYR TYR SER GLU ASP PRO VAL LEU SER GLY SEQRES 12 A 721 GLU MET ALA SER SER PHE VAL LYS GLY VAL GLN SER GLN SEQRES 13 A 721 GLY VAL GLY ALA CYS ILE LYS HIS PHE VAL ALA ASN ASN SEQRES 14 A 721 GLN GLU THR ASN ARG MET VAL VAL ASP THR ILE VAL SER SEQRES 15 A 721 GLU ARG ALA LEU ARG GLU ILE TYR LEU ARG GLY PHE GLU SEQRES 16 A 721 ILE ALA VAL LYS LYS SER LYS PRO TRP SER VAL MET SER SEQRES 17 A 721 ALA TYR ASN LYS LEU ASN GLY LYS TYR CYS SER GLN ASN SEQRES 18 A 721 GLU TRP LEU LEU LYS LYS VAL LEU ARG GLU GLU TRP GLY SEQRES 19 A 721 PHE GLU GLY PHE VAL MET SER ASP TRP TYR ALA GLY ASP SEQRES 20 A 721 ASN PRO VAL GLU GLN LEU LYS ALA GLY ASN ASP LEU ILE SEQRES 21 A 721 MET PRO GLY LYS ALA TYR GLN VAL ASN THR GLU ARG ARG SEQRES 22 A 721 ASP GLU ILE GLU GLU ILE MET GLU ALA LEU LYS GLU GLY SEQRES 23 A 721 LYS LEU SER GLU GLU VAL LEU ASP GLU CYS VAL ARG ASN SEQRES 24 A 721 ILE LEU LYS VAL LEU VAL ASN ALA PRO SER PHE LYS ASN SEQRES 25 A 721 TYR ARG TYR SER ASN LYS PRO ASP LEU GLU LYS HIS ALA SEQRES 26 A 721 LYS VAL ALA TYR GLU ALA GLY ALA GLU GLY VAL VAL LEU SEQRES 27 A 721 LEU ARG ASN GLU GLU ALA LEU PRO LEU SER GLU ASN SER SEQRES 28 A 721 LYS ILE ALA LEU PHE GLY THR GLY GLN ILE GLU THR ILE SEQRES 29 A 721 LYS GLY GLY THR GLY SER GLY ASP THR HIS PRO ARG TYR SEQRES 30 A 721 ALA ILE SER ILE LEU GLU GLY ILE LYS GLU ARG GLY LEU SEQRES 31 A 721 ASN PHE ASP GLU GLU LEU ALA LYS THR TYR GLU ASP TYR SEQRES 32 A 721 ILE LYS LYS MET ARG GLU THR GLU GLU TYR LYS PRO ARG SEQRES 33 A 721 ARG ASP SER TRP GLY THR ILE ILE LYS PRO LYS LEU PRO SEQRES 34 A 721 GLU ASN PHE LEU SER GLU LYS GLU ILE HIS LYS LEU ALA SEQRES 35 A 721 LYS LYS ASN ASP VAL ALA VAL ILE VAL ILE SER ARG ILE SEQRES 36 A 721 SER GLY GLU GLY TYR ASP ARG LYS PRO VAL LYS GLY ASP SEQRES 37 A 721 PHE TYR LEU SER ASP ASP GLU THR ASP LEU ILE LYS THR SEQRES 38 A 721 VAL SER ARG GLU PHE HIS GLU GLN GLY LYS LYS VAL ILE SEQRES 39 A 721 VAL LEU LEU ASN ILE GLY SER PRO VAL GLU VAL VAL SER SEQRES 40 A 721 TRP ARG ASP LEU VAL ASP GLY ILE LEU LEU VAL TRP GLN SEQRES 41 A 721 ALA GLY GLN GLU THR GLY ARG ILE VAL ALA ASP VAL LEU SEQRES 42 A 721 THR GLY ARG ILE ASN PRO SER GLY LYS LEU PRO THR THR SEQRES 43 A 721 PHE PRO ARG ASP TYR SER ASP VAL PRO SER TRP THR PHE SEQRES 44 A 721 PRO GLY GLU PRO LYS ASP ASN PRO GLN LYS VAL VAL TYR SEQRES 45 A 721 GLU GLU ASP ILE TYR VAL GLY TYR ARG TYR TYR ASP THR SEQRES 46 A 721 PHE GLY VAL GLU PRO ALA TYR GLU PHE GLY TYR GLY LEU SEQRES 47 A 721 SER TYR THR THR PHE GLU TYR SER ASP LEU ASN VAL SER SEQRES 48 A 721 PHE ASP GLY GLU THR LEU ARG VAL GLN TYR ARG ILE GLU SEQRES 49 A 721 ASN THR GLY GLY ARG ALA GLY LYS GLU VAL SER GLN VAL SEQRES 50 A 721 TYR ILE LYS ALA PRO LYS GLY LYS ILE ASP LYS PRO PHE SEQRES 51 A 721 GLN GLU LEU LYS ALA PHE HIS LYS THR ARG LEU LEU ASN SEQRES 52 A 721 PRO GLY GLU SER GLU GLU VAL VAL LEU GLU ILE PRO VAL SEQRES 53 A 721 ARG ASP LEU ALA SER PHE ASN GLY GLU GLU TRP VAL VAL SEQRES 54 A 721 GLU ALA GLY GLU TYR GLU VAL ARG VAL GLY ALA SER SER SEQRES 55 A 721 ARG ASN ILE LYS LEU LYS GLY THR PHE SER VAL GLY GLU SEQRES 56 A 721 GLU ARG ARG PHE LYS PRO HET BR A1722 1 HET BR A1723 1 HET BR A1724 1 HET BR A1725 1 HET BGC A1726 12 HETNAM BGC BETA-D-GLUCOSE HETNAM BR BROMIDE ION FORMUL 2 BGC C6 H12 O6 FORMUL 3 BR 4(BR 1-) FORMUL 4 HOH *177(H2 O) HELIX 1 1 GLU A 2 LEU A 11 1 10 HELIX 2 2 THR A 12 VAL A 20 1 9 HELIX 3 3 VAL A 83 THR A 90 1 8 HELIX 4 4 ASN A 92 VAL A 99 1 8 HELIX 5 5 GLU A 105 TYR A 110 1 6 HELIX 6 6 ARG A 130 TYR A 134 5 5 HELIX 7 7 GLU A 144 LYS A 151 1 8 HELIX 8 8 SER A 182 ILE A 189 1 8 HELIX 9 9 PHE A 194 LYS A 202 1 9 HELIX 10 10 CYS A 218 GLN A 220 5 3 HELIX 11 11 ASN A 221 LYS A 226 1 6 HELIX 12 12 LYS A 227 TRP A 233 1 7 HELIX 13 13 ASN A 248 ALA A 255 1 8 HELIX 14 14 LYS A 264 VAL A 268 5 5 HELIX 15 15 ASP A 274 GLU A 285 1 12 HELIX 16 16 SER A 289 VAL A 305 1 17 HELIX 17 17 ASN A 306 ASN A 312 5 7 HELIX 18 18 ASP A 320 ALA A 331 1 12 HELIX 19 19 ASP A 393 THR A 410 1 18 HELIX 20 20 SER A 434 ASN A 445 1 12 HELIX 21 21 SER A 472 GLN A 489 1 18 HELIX 22 22 TRP A 508 VAL A 512 5 5 HELIX 23 23 ARG A 527 THR A 534 1 8 HELIX 24 24 ASP A 550 VAL A 554 5 5 HELIX 25 25 TYR A 580 PHE A 586 1 7 HELIX 26 26 ARG A 677 ALA A 680 5 4 SHEET 1 AA 2 LEU A 56 ALA A 57 0 SHEET 2 AA 2 VAL A 114 LEU A 115 1 O VAL A 114 N ALA A 57 SHEET 1 AB 3 CYS A 161 PHE A 165 0 SHEET 2 AB 3 SER A 205 SER A 208 1 O SER A 205 N ILE A 162 SHEET 3 AB 3 VAL A 239 SER A 241 1 O MET A 240 N SER A 208 SHEET 1 AC 3 LYS A 212 LEU A 213 0 SHEET 2 AC 3 ASP A 178 ILE A 180 1 N THR A 179 O LYS A 212 SHEET 3 AC 3 LYS A 569 VAL A 571 1 O VAL A 570 N ILE A 180 SHEET 1 AD 2 VAL A 337 LEU A 338 0 SHEET 2 AD 2 LEU A 516 LEU A 517 -1 O LEU A 517 N VAL A 337 SHEET 1 AE 3 ILE A 353 PHE A 356 0 SHEET 2 AE 3 VAL A 447 SER A 453 1 O VAL A 447 N ALA A 354 SHEET 3 AE 3 VAL A 493 ASN A 498 1 O ILE A 494 N ILE A 450 SHEET 1 AF 2 PHE A 547 PRO A 548 0 SHEET 2 AF 2 PRO A 590 TYR A 592 -1 N ALA A 591 O PHE A 547 SHEET 1 AG 3 PHE A 603 PHE A 612 0 SHEET 2 AG 3 THR A 616 ASN A 625 -1 O ARG A 618 N SER A 611 SHEET 3 AG 3 SER A 667 PRO A 675 -1 O GLU A 668 N ILE A 623 SHEET 1 AH 4 GLU A 652 LYS A 658 0 SHEET 2 AH 4 VAL A 634 LYS A 640 -1 O SER A 635 N HIS A 657 SHEET 3 AH 4 GLU A 695 SER A 701 -1 O GLU A 695 N LYS A 640 SHEET 4 AH 4 ASN A 704 LEU A 707 -1 O ASN A 704 N SER A 701 SHEET 1 AI 3 SER A 681 PHE A 682 0 SHEET 2 AI 3 TRP A 687 VAL A 689 -1 O VAL A 688 N SER A 681 SHEET 3 AI 3 ARG A 717 PHE A 719 -1 O ARG A 717 N VAL A 689 CISPEP 1 ASP A 58 GLY A 59 0 -0.97 CISPEP 2 ALA A 117 PRO A 118 0 3.70 CISPEP 3 LYS A 163 HIS A 164 0 -5.59 CISPEP 4 PHE A 165 VAL A 166 0 1.20 CISPEP 5 MET A 261 PRO A 262 0 -3.93 CISPEP 6 LEU A 345 PRO A 346 0 0.19 CISPEP 7 PHE A 559 PRO A 560 0 2.78 CISPEP 8 GLU A 562 PRO A 563 0 -4.01 SITE 1 AC1 2 ARG A 340 TYR A 592 SITE 1 AC2 3 SER A 456 GLY A 500 SER A 501 SITE 1 AC3 5 ASN A 121 ILE A 122 ALA A 167 ASN A 169 SITE 2 AC3 5 TYR A 190 SITE 1 AC4 3 THR A 558 VAL A 571 HOH A2116 SITE 1 AC5 12 ASP A 58 LEU A 116 ARG A 130 LYS A 163 SITE 2 AC5 12 HIS A 164 ARG A 174 MET A 207 TYR A 210 SITE 3 AC5 12 ASP A 242 TRP A 243 SER A 370 GLU A 458 CRYST1 75.100 128.500 176.300 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013316 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005672 0.00000