HEADER HYDROLASE 11-SEP-09 2WT6 OBSLTE 23-FEB-10 2WT6 TITLE STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA TITLE 2 NEAPOLITANA IN COMPLEX WITH GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-GLUCOSIDASE 3B; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA NEAPOLITANA; SOURCE 3 ORGANISM_TAXID: 309803; SOURCE 4 STRAIN: DSM 4359; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-22B; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE, TIM BARREL FOLD, FIBRONECTIN TYPE III FOLD EXPDTA X-RAY DIFFRACTION AUTHOR T.POZZO,E.NORDBERG KARLSSON,D.T.LOGAN REVDAT 2 23-FEB-10 2WT6 1 OBSLTE REVDAT 1 16-FEB-10 2WT6 0 JRNL AUTH T.POZZO,J.LINARES PASTEN,E.NORDBERG KARLSSON, JRNL AUTH 2 D.T.LOGAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF BETA- JRNL TITL 2 GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA: A JRNL TITL 3 THERMOSTABLE 3-DOMAIN REPRESENTATIVE OF GLYCOSIDE JRNL TITL 4 HYDROLASE FAMILY 3 JRNL REF J.MOL.BIOL. 2010 JRNL REFN ESSN 1089-8638 JRNL PMID 20138890 JRNL DOI 10.1016/J.JMB.2010.01.072 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.TURNER,A.PRAMHED,E.KANDERS,M.HEDSTROM, REMARK 1 AUTH 2 E.N.KARLSSON,D.T.LOGAN REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND REMARK 1 TITL 2 PRELIMINARY X-RAY DIFFRACTION ANALYSIS OF REMARK 1 TITL 3 THERMOTOGA NEAPOLITANA BETA-GLUCOSIDASE B. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 802 2007 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 17768360 REMARK 1 DOI 10.1107/S1744309107040341 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.313 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.453 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.37 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.66 REMARK 3 NUMBER OF REFLECTIONS : 36846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1763 REMARK 3 R VALUE (WORKING SET) : 0.1730 REMARK 3 FREE R VALUE : 0.2388 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4571 - 5.4318 0.99 2843 130 0.1607 0.1833 REMARK 3 2 5.4318 - 4.3140 1.00 2749 138 0.1284 0.2075 REMARK 3 3 4.3140 - 3.7695 1.00 2718 149 0.1296 0.1954 REMARK 3 4 3.7695 - 3.4252 1.00 2699 154 0.1494 0.2060 REMARK 3 5 3.4252 - 3.1799 1.00 2678 150 0.1605 0.2468 REMARK 3 6 3.1799 - 2.9925 1.00 2700 142 0.1865 0.2618 REMARK 3 7 2.9925 - 2.8427 1.00 2658 152 0.1796 0.2734 REMARK 3 8 2.8427 - 2.7190 1.00 2661 165 0.2004 0.2773 REMARK 3 9 2.7190 - 2.6144 1.00 2707 119 0.2117 0.3602 REMARK 3 10 2.6144 - 2.5242 1.00 2671 145 0.2244 0.3015 REMARK 3 11 2.5242 - 2.4453 1.00 2662 147 0.2466 0.3250 REMARK 3 12 2.4453 - 2.3754 1.00 2637 143 0.2936 0.3676 REMARK 3 13 2.3754 - 2.3129 0.97 2605 124 0.3609 0.4058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.364 REMARK 3 B_SOL : 61.916 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.14 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.4290 REMARK 3 B22 (A**2) : 11.2585 REMARK 3 B33 (A**2) : -7.8295 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : -0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5784 REMARK 3 ANGLE : 0.915 7820 REMARK 3 CHIRALITY : 0.064 843 REMARK 3 PLANARITY : 0.003 1024 REMARK 3 DIHEDRAL : 17.626 2159 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:320) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2399 24.9931 -21.9905 REMARK 3 T TENSOR REMARK 3 T11: 0.3106 T22: 0.2418 REMARK 3 T33: 0.1501 T12: -0.1422 REMARK 3 T13: -0.0194 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.8475 L22: 0.9545 REMARK 3 L33: 0.8602 L12: 0.6195 REMARK 3 L13: -0.2212 L23: -0.0824 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.0337 S13: 0.0049 REMARK 3 S21: -0.1592 S22: -0.0067 S23: -0.0047 REMARK 3 S31: -0.3495 S32: 0.2828 S33: 0.0085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 321:536) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5148 12.6950 -25.3875 REMARK 3 T TENSOR REMARK 3 T11: 0.1952 T22: 0.3295 REMARK 3 T33: 0.2599 T12: -0.0114 REMARK 3 T13: -0.1391 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 0.1111 L22: 1.1684 REMARK 3 L33: 1.9956 L12: -0.6784 REMARK 3 L13: 0.8553 L23: 0.4026 REMARK 3 S TENSOR REMARK 3 S11: -0.1003 S12: -0.1437 S13: -0.0589 REMARK 3 S21: -0.1734 S22: 0.0243 S23: 0.3214 REMARK 3 S31: -0.1839 S32: -0.4742 S33: 0.0374 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 537:599) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0048 5.8661 -8.6188 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.2057 REMARK 3 T33: 0.2113 T12: -0.0089 REMARK 3 T13: -0.0353 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.2121 L22: 0.3927 REMARK 3 L33: 0.1795 L12: -0.0819 REMARK 3 L13: -0.1721 L23: -0.2491 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.2004 S13: -0.0070 REMARK 3 S21: -0.0229 S22: 0.0149 S23: 0.1284 REMARK 3 S31: 0.0373 S32: -0.1399 S33: -0.0312 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 600:720) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0701 -8.3035 -20.5634 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.2897 REMARK 3 T33: 0.1754 T12: 0.0391 REMARK 3 T13: 0.0529 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.3935 L22: 1.9060 REMARK 3 L33: 1.1854 L12: -0.9870 REMARK 3 L13: -0.3590 L23: -0.9518 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: -0.0753 S13: -0.1113 REMARK 3 S21: -0.4326 S22: -0.0176 S23: 0.0205 REMARK 3 S31: 0.3933 S32: 0.4289 S33: 0.0752 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 1 AND 417-423 ARE REMARK 3 DISORDERED REMARK 4 REMARK 4 2WT6 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-09. REMARK 100 THE PDBE ID CODE IS EBI-41123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : CYLINDRICAL GRAZING REMARK 200 INCIDENCE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 34.50 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.5 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CCP4, SHELXD, SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 3350, 0.1 M KBR, 90 MM REMARK 280 BIS-TRIS PROPANE, PH 7.4. CRYOPROTECTANT 25% GLYCEROL, 20% REMARK 280 PEG 3350, 0.2 M NAI, 90 MM BIS- TRIS PROPANE, PH 7.4. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.60000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.45000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.60000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.60000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.45000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.60000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 417 REMARK 465 ASP A 418 REMARK 465 SER A 419 REMARK 465 TRP A 420 REMARK 465 GLY A 421 REMARK 465 THR A 422 REMARK 465 ILE A 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 29 -140.56 53.04 REMARK 500 ARG A 48 -72.65 -34.34 REMARK 500 ASN A 71 55.80 -109.76 REMARK 500 TYR A 76 48.84 -140.82 REMARK 500 MET A 120 30.21 -148.35 REMARK 500 LYS A 226 -61.53 -107.26 REMARK 500 LYS A 311 33.54 -97.09 REMARK 500 LYS A 318 67.87 -151.22 REMARK 500 ASN A 341 83.09 -153.62 REMARK 500 SER A 351 125.31 -36.61 REMARK 500 ASP A 468 -99.09 -120.84 REMARK 500 TRP A 519 -133.69 47.42 REMARK 500 ASN A 566 62.60 -155.42 REMARK 500 ASP A 575 -130.14 59.44 REMARK 500 GLU A 685 -50.12 -121.29 REMARK 500 ASN A 704 78.72 -108.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1722 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1723 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1724 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1725 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1726 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WT3 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH GLUCOSE REMARK 900 : A THERMOSTABLE 3-DOMAIN REPRESENTATIVE OF REMARK 900 GLYCOSIDE HYDROLASE FAMILY 3 REMARK 900 RELATED ID: 2WT5 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH ALPHA- REMARK 900 D-GLUCOSE REMARK 900 RELATED ID: 2X41 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH GLUCOSE REMARK 900 RELATED ID: 2X42 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH ALPHA- REMARK 900 D-GLUCOSE REMARK 900 RELATED ID: 2X40 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM REMARK 900 THERMOTOGA NEAPOLITANA IN COMPLEX WITH REMARK 900 GLYCEROL DBREF 2WT6 A 1 721 UNP Q0GC07 Q0GC07_THENN 1 721 SEQRES 1 A 721 MET GLU LYS VAL ASN GLU ILE LEU SER GLN LEU THR LEU SEQRES 2 A 721 GLU GLU LYS VAL LYS LEU VAL VAL GLY VAL GLY LEU PRO SEQRES 3 A 721 GLY LEU PHE GLY ASN PRO HIS SER ARG VAL ALA GLY ALA SEQRES 4 A 721 ALA GLY GLU THR HIS PRO VAL PRO ARG VAL GLY LEU PRO SEQRES 5 A 721 ALA PHE VAL LEU ALA ASP GLY PRO ALA GLY LEU ARG ILE SEQRES 6 A 721 ASN PRO THR ARG GLU ASN ASP GLU ASN THR TYR TYR THR SEQRES 7 A 721 THR ALA PHE PRO VAL GLU ILE MET LEU ALA SER THR TRP SEQRES 8 A 721 ASN ARG GLU LEU LEU GLU GLU VAL GLY LYS ALA MET GLY SEQRES 9 A 721 GLU GLU VAL ARG GLU TYR GLY VAL ASP VAL LEU LEU ALA SEQRES 10 A 721 PRO ALA MET ASN ILE HIS ARG ASN PRO LEU CYS GLY ARG SEQRES 11 A 721 ASN PHE GLU TYR TYR SER GLU ASP PRO VAL LEU SER GLY SEQRES 12 A 721 GLU MET ALA SER SER PHE VAL LYS GLY VAL GLN SER GLN SEQRES 13 A 721 GLY VAL GLY ALA CYS ILE LYS HIS PHE VAL ALA ASN ASN SEQRES 14 A 721 GLN GLU THR ASN ARG MET VAL VAL ASP THR ILE VAL SER SEQRES 15 A 721 GLU ARG ALA LEU ARG GLU ILE TYR LEU ARG GLY PHE GLU SEQRES 16 A 721 ILE ALA VAL LYS LYS SER LYS PRO TRP SER VAL MET SER SEQRES 17 A 721 ALA TYR ASN LYS LEU ASN GLY LYS TYR CYS SER GLN ASN SEQRES 18 A 721 GLU TRP LEU LEU LYS LYS VAL LEU ARG GLU GLU TRP GLY SEQRES 19 A 721 PHE GLU GLY PHE VAL MET SER ASP TRP TYR ALA GLY ASP SEQRES 20 A 721 ASN PRO VAL GLU GLN LEU LYS ALA GLY ASN ASP LEU ILE SEQRES 21 A 721 MET PRO GLY LYS ALA TYR GLN VAL ASN THR GLU ARG ARG SEQRES 22 A 721 ASP GLU ILE GLU GLU ILE MET GLU ALA LEU LYS GLU GLY SEQRES 23 A 721 LYS LEU SER GLU GLU VAL LEU ASP GLU CYS VAL ARG ASN SEQRES 24 A 721 ILE LEU LYS VAL LEU VAL ASN ALA PRO SER PHE LYS ASN SEQRES 25 A 721 TYR ARG TYR SER ASN LYS PRO ASP LEU GLU LYS HIS ALA SEQRES 26 A 721 LYS VAL ALA TYR GLU ALA GLY ALA GLU GLY VAL VAL LEU SEQRES 27 A 721 LEU ARG ASN GLU GLU ALA LEU PRO LEU SER GLU ASN SER SEQRES 28 A 721 LYS ILE ALA LEU PHE GLY THR GLY GLN ILE GLU THR ILE SEQRES 29 A 721 LYS GLY GLY THR GLY SER GLY ASP THR HIS PRO ARG TYR SEQRES 30 A 721 ALA ILE SER ILE LEU GLU GLY ILE LYS GLU ARG GLY LEU SEQRES 31 A 721 ASN PHE ASP GLU GLU LEU ALA LYS THR TYR GLU ASP TYR SEQRES 32 A 721 ILE LYS LYS MET ARG GLU THR GLU GLU TYR LYS PRO ARG SEQRES 33 A 721 ARG ASP SER TRP GLY THR ILE ILE LYS PRO LYS LEU PRO SEQRES 34 A 721 GLU ASN PHE LEU SER GLU LYS GLU ILE HIS LYS LEU ALA SEQRES 35 A 721 LYS LYS ASN ASP VAL ALA VAL ILE VAL ILE SER ARG ILE SEQRES 36 A 721 SER GLY GLU GLY TYR ASP ARG LYS PRO VAL LYS GLY ASP SEQRES 37 A 721 PHE TYR LEU SER ASP ASP GLU THR ASP LEU ILE LYS THR SEQRES 38 A 721 VAL SER ARG GLU PHE HIS GLU GLN GLY LYS LYS VAL ILE SEQRES 39 A 721 VAL LEU LEU ASN ILE GLY SER PRO VAL GLU VAL VAL SER SEQRES 40 A 721 TRP ARG ASP LEU VAL ASP GLY ILE LEU LEU VAL TRP GLN SEQRES 41 A 721 ALA GLY GLN GLU THR GLY ARG ILE VAL ALA ASP VAL LEU SEQRES 42 A 721 THR GLY ARG ILE ASN PRO SER GLY LYS LEU PRO THR THR SEQRES 43 A 721 PHE PRO ARG ASP TYR SER ASP VAL PRO SER TRP THR PHE SEQRES 44 A 721 PRO GLY GLU PRO LYS ASP ASN PRO GLN LYS VAL VAL TYR SEQRES 45 A 721 GLU GLU ASP ILE TYR VAL GLY TYR ARG TYR TYR ASP THR SEQRES 46 A 721 PHE GLY VAL GLU PRO ALA TYR GLU PHE GLY TYR GLY LEU SEQRES 47 A 721 SER TYR THR THR PHE GLU TYR SER ASP LEU ASN VAL SER SEQRES 48 A 721 PHE ASP GLY GLU THR LEU ARG VAL GLN TYR ARG ILE GLU SEQRES 49 A 721 ASN THR GLY GLY ARG ALA GLY LYS GLU VAL SER GLN VAL SEQRES 50 A 721 TYR ILE LYS ALA PRO LYS GLY LYS ILE ASP LYS PRO PHE SEQRES 51 A 721 GLN GLU LEU LYS ALA PHE HIS LYS THR ARG LEU LEU ASN SEQRES 52 A 721 PRO GLY GLU SER GLU GLU VAL VAL LEU GLU ILE PRO VAL SEQRES 53 A 721 ARG ASP LEU ALA SER PHE ASN GLY GLU GLU TRP VAL VAL SEQRES 54 A 721 GLU ALA GLY GLU TYR GLU VAL ARG VAL GLY ALA SER SER SEQRES 55 A 721 ARG ASN ILE LYS LEU LYS GLY THR PHE SER VAL GLY GLU SEQRES 56 A 721 GLU ARG ARG PHE LYS PRO HET BR A1722 1 HET BR A1723 1 HET BR A1724 1 HET BR A1725 1 HET GOL A1726 6 HETNAM GOL GLYCEROL HETNAM BR BROMIDE ION FORMUL 2 GOL C3 H8 O3 FORMUL 3 BR 4(BR 1-) FORMUL 4 HOH *194(H2 O) HELIX 1 1 GLU A 2 LEU A 11 1 10 HELIX 2 2 THR A 12 VAL A 20 1 9 HELIX 3 3 VAL A 83 THR A 90 1 8 HELIX 4 4 ASN A 92 VAL A 99 1 8 HELIX 5 5 GLU A 105 TYR A 110 1 6 HELIX 6 6 ARG A 130 TYR A 134 5 5 HELIX 7 7 GLU A 144 LYS A 151 1 8 HELIX 8 8 SER A 182 ILE A 189 1 8 HELIX 9 9 PHE A 194 LYS A 202 1 9 HELIX 10 10 CYS A 218 GLN A 220 5 3 HELIX 11 11 ASN A 221 LYS A 226 1 6 HELIX 12 12 LYS A 227 TRP A 233 1 7 HELIX 13 13 ASN A 248 ALA A 255 1 8 HELIX 14 14 LYS A 264 VAL A 268 5 5 HELIX 15 15 ASP A 274 GLU A 285 1 12 HELIX 16 16 SER A 289 VAL A 305 1 17 HELIX 17 17 ASP A 320 ALA A 331 1 12 HELIX 18 18 ASP A 393 GLU A 409 1 17 HELIX 19 19 THR A 410 LYS A 414 5 5 HELIX 20 20 SER A 434 ASN A 445 1 12 HELIX 21 21 SER A 472 GLN A 489 1 18 HELIX 22 22 VAL A 505 ASP A 510 1 6 HELIX 23 23 ARG A 527 THR A 534 1 8 HELIX 24 24 ASP A 550 VAL A 554 5 5 HELIX 25 25 TYR A 580 PHE A 586 1 7 HELIX 26 26 ARG A 677 ALA A 680 5 4 SHEET 1 AA 2 LEU A 56 ALA A 57 0 SHEET 2 AA 2 VAL A 114 LEU A 115 1 O VAL A 114 N ALA A 57 SHEET 1 AB 3 CYS A 161 PHE A 165 0 SHEET 2 AB 3 SER A 205 SER A 208 1 O SER A 205 N ILE A 162 SHEET 3 AB 3 VAL A 239 SER A 241 1 O MET A 240 N SER A 208 SHEET 1 AC 3 LYS A 212 LEU A 213 0 SHEET 2 AC 3 ASP A 178 ILE A 180 1 N THR A 179 O LYS A 212 SHEET 3 AC 3 LYS A 569 VAL A 571 1 O VAL A 570 N ILE A 180 SHEET 1 AD 5 VAL A 337 LEU A 338 0 SHEET 2 AD 5 LEU A 516 LEU A 517 -1 O LEU A 517 N VAL A 337 SHEET 3 AD 5 LYS A 492 ASN A 498 1 O VAL A 495 N LEU A 516 SHEET 4 AD 5 VAL A 447 SER A 453 1 O ALA A 448 N ILE A 494 SHEET 5 AD 5 ILE A 353 PHE A 356 1 O ALA A 354 N VAL A 449 SHEET 1 AE 2 PHE A 547 PRO A 548 0 SHEET 2 AE 2 PRO A 590 TYR A 592 -1 N ALA A 591 O PHE A 547 SHEET 1 AF 3 PHE A 603 PHE A 612 0 SHEET 2 AF 3 THR A 616 ASN A 625 -1 O ARG A 618 N SER A 611 SHEET 3 AF 3 SER A 667 PRO A 675 -1 O GLU A 668 N ILE A 623 SHEET 1 AG 4 GLU A 652 LYS A 658 0 SHEET 2 AG 4 VAL A 634 LYS A 640 -1 O SER A 635 N HIS A 657 SHEET 3 AG 4 GLU A 695 ALA A 700 -1 O GLU A 695 N LYS A 640 SHEET 4 AG 4 ILE A 705 LEU A 707 -1 N LYS A 706 O VAL A 698 SHEET 1 AH 3 SER A 681 PHE A 682 0 SHEET 2 AH 3 TRP A 687 VAL A 689 -1 O VAL A 688 N SER A 681 SHEET 3 AH 3 ARG A 717 PHE A 719 -1 O ARG A 717 N VAL A 689 CISPEP 1 ASP A 58 GLY A 59 0 -1.28 CISPEP 2 ALA A 117 PRO A 118 0 2.03 CISPEP 3 LYS A 163 HIS A 164 0 -6.94 CISPEP 4 PHE A 165 VAL A 166 0 0.38 CISPEP 5 MET A 261 PRO A 262 0 3.18 CISPEP 6 LEU A 345 PRO A 346 0 -2.09 CISPEP 7 PHE A 559 PRO A 560 0 4.43 CISPEP 8 GLU A 562 PRO A 563 0 -5.23 SITE 1 AC1 2 ARG A 340 TYR A 592 SITE 1 AC2 3 SER A 456 GLY A 500 SER A 501 SITE 1 AC3 4 ASN A 121 ILE A 122 ALA A 167 ASN A 169 SITE 1 AC4 1 VAL A 571 SITE 1 AC5 8 ASP A 58 LYS A 163 HIS A 164 MET A 207 SITE 2 AC5 8 ASP A 242 TRP A 243 SER A 370 HOH A2103 CRYST1 74.900 127.200 175.200 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013351 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005708 0.00000