HEADER HYDROLASE 15-SEP-09 2WT9 TITLE ACINETOBACTER BAUMANII NICOTINAMIDASE PYRAZINAMIDEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BIFUNCTIONAL PROTEIN; COMPND 5 EC: 3.5.1.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 509173; SOURCE 4 STRAIN: AYE; SOURCE 5 ATCC: 19606; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B-TEV KEYWDS HYDROLASE, PYRAZINAMIDASE EXPDTA X-RAY DIFFRACTION AUTHOR P.K.FYFE,V.A.RAO,A.ZEMLA,S.CAMERON,W.N.HUNTER REVDAT 3 20-DEC-23 2WT9 1 REMARK LINK REVDAT 2 09-NOV-11 2WT9 1 JRNL REMARK HET HETSYN REVDAT 2 2 1 FORMUL LINK SITE ATOM REVDAT 2 3 1 HETATM CONECT VERSN REVDAT 1 10-NOV-09 2WT9 0 JRNL AUTH P.K.FYFE,V.A.RAO,A.ZEMLA,S.CAMERON,W.N.HUNTER JRNL TITL SPECIFICITY AND MECHANISM OF ACINETOBACTER BAUMANII JRNL TITL 2 NICOTINAMIDASE: IMPLICATIONS FOR ACTIVATION OF THE JRNL TITL 3 FRONT-LINE TUBERCULOSIS DRUG PYRAZINAMIDE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 48 9176 2009 JRNL REFN ISSN 1433-7851 JRNL PMID 19859929 JRNL DOI 10.1002/ANIE.200903407 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2378 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3263 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.23000 REMARK 3 B22 (A**2) : -0.77000 REMARK 3 B33 (A**2) : -2.27000 REMARK 3 B12 (A**2) : 1.88000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : -0.52000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3497 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2214 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4784 ; 1.914 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5457 ; 1.053 ; 2.998 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 6.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;34.618 ;26.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 544 ;14.354 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;15.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4003 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 659 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2155 ; 3.189 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 874 ; 1.176 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3511 ; 4.096 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 3.762 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1273 ; 5.069 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2WT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1290041129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 28.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IM5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 200 MM SODIUM REMARK 280 CACODYLATE, PH 5.5, 200 MM LITHIUM CHLORIDE AND 20% GLYCEROL. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 MET A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 212 REMARK 465 GLU A 213 REMARK 465 CYS A 214 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 MET B 3 REMARK 465 ASN B 4 REMARK 465 GLU B 213 REMARK 465 CYS B 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2102 O HOH B 2110 2.02 REMARK 500 O HOH B 2022 O HOH B 2024 2.09 REMARK 500 OE1 GLU A 191 O HOH A 2126 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 32 CA ALA B 32 CB 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 33 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 157 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 55 72.18 -155.52 REMARK 500 PHE A 73 -1.23 79.10 REMARK 500 PRO A 87 153.31 -49.97 REMARK 500 SER A 122 71.90 -159.10 REMARK 500 THR A 132 -37.94 -133.92 REMARK 500 PHE A 158 -89.82 -123.38 REMARK 500 LEU B 27 54.25 -141.41 REMARK 500 TRP B 55 68.10 -158.24 REMARK 500 PHE B 73 -0.61 74.22 REMARK 500 SER B 122 71.74 -158.51 REMARK 500 THR B 132 -38.99 -134.15 REMARK 500 PHE B 158 -85.37 -123.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2012 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B2015 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD2 REMARK 620 2 HIS A 56 NE2 94.1 REMARK 620 3 HIS A 89 NE2 92.2 89.6 REMARK 620 4 NIO A1216 N 93.7 172.1 91.2 REMARK 620 5 HOH A2141 O 172.6 83.5 94.7 88.6 REMARK 620 6 HOH A2142 O 89.5 94.8 175.2 84.3 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 54 OD1 REMARK 620 2 HIS B 56 NE2 89.2 REMARK 620 3 HIS B 89 NE2 92.6 93.6 REMARK 620 4 NIO B1216 N 87.7 176.5 88.2 REMARK 620 5 HOH B2148 O 86.3 91.5 174.8 86.7 REMARK 620 6 HOH B2149 O 171.6 85.9 94.5 97.0 87.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NIO A 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NIO B 1216 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WTA RELATED DB: PDB REMARK 900 ACINETOBACTER BAUMANII NICOTINAMIDASE PYRAZINAMIDEASE DBREF 2WT9 A -20 0 PDB 2WT9 2WT9 -20 0 DBREF 2WT9 A 1 214 UNP B0VA03 B0VA03_ACIBY 1 214 DBREF 2WT9 B -20 0 PDB 2WT9 2WT9 -20 0 DBREF 2WT9 B 1 214 UNP B0VA03 B0VA03_ACIBY 1 214 SEQRES 1 A 235 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 235 GLU ASN LEU TYR PHE GLN GLY HIS MET LYS MET ASN LYS SEQRES 3 A 235 GLN PRO GLN ASN SER ALA LEU VAL VAL VAL ASP VAL GLN SEQRES 4 A 235 ASN GLY PHE THR PRO GLY GLY ASN LEU ALA VAL ALA ASP SEQRES 5 A 235 ALA ASP THR ILE ILE PRO THR ILE ASN GLN LEU ALA GLY SEQRES 6 A 235 CYS PHE GLU ASN VAL VAL LEU THR GLN ASP TRP HIS PRO SEQRES 7 A 235 ASP ASN HIS ILE SER PHE ALA ALA ASN HIS PRO GLY LYS SEQRES 8 A 235 GLN PRO PHE GLU THR ILE GLU LEU ASP TYR GLY SER GLN SEQRES 9 A 235 VAL LEU TRP PRO LYS HIS CYS ILE GLN GLY THR HIS ASP SEQRES 10 A 235 ALA GLU PHE HIS PRO ASP LEU ASN ILE PRO THR ALA GLN SEQRES 11 A 235 LEU ILE ILE ARG LYS GLY PHE HIS ALA HIS ILE ASP SER SEQRES 12 A 235 TYR SER ALA PHE MET GLU ALA ASP HIS THR THR MET THR SEQRES 13 A 235 GLY LEU THR GLY TYR LEU LYS GLU ARG GLY ILE ASP THR SEQRES 14 A 235 VAL TYR VAL VAL GLY ILE ALA THR ASP PHE CYS VAL ALA SEQRES 15 A 235 TRP THR ALA LEU ASP ALA VAL LYS GLN GLY PHE LYS THR SEQRES 16 A 235 LEU VAL ILE GLU ASP ALA CYS LYS GLY ILE ASP LEU ASN SEQRES 17 A 235 GLY SER LEU GLU GLN ALA TRP GLN THR MET GLN GLN GLN SEQRES 18 A 235 GLY VAL VAL ARG ILE GLN SER THR ASP LEU LEU ASN GLU SEQRES 19 A 235 CYS SEQRES 1 B 235 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 235 GLU ASN LEU TYR PHE GLN GLY HIS MET LYS MET ASN LYS SEQRES 3 B 235 GLN PRO GLN ASN SER ALA LEU VAL VAL VAL ASP VAL GLN SEQRES 4 B 235 ASN GLY PHE THR PRO GLY GLY ASN LEU ALA VAL ALA ASP SEQRES 5 B 235 ALA ASP THR ILE ILE PRO THR ILE ASN GLN LEU ALA GLY SEQRES 6 B 235 CYS PHE GLU ASN VAL VAL LEU THR GLN ASP TRP HIS PRO SEQRES 7 B 235 ASP ASN HIS ILE SER PHE ALA ALA ASN HIS PRO GLY LYS SEQRES 8 B 235 GLN PRO PHE GLU THR ILE GLU LEU ASP TYR GLY SER GLN SEQRES 9 B 235 VAL LEU TRP PRO LYS HIS CYS ILE GLN GLY THR HIS ASP SEQRES 10 B 235 ALA GLU PHE HIS PRO ASP LEU ASN ILE PRO THR ALA GLN SEQRES 11 B 235 LEU ILE ILE ARG LYS GLY PHE HIS ALA HIS ILE ASP SER SEQRES 12 B 235 TYR SER ALA PHE MET GLU ALA ASP HIS THR THR MET THR SEQRES 13 B 235 GLY LEU THR GLY TYR LEU LYS GLU ARG GLY ILE ASP THR SEQRES 14 B 235 VAL TYR VAL VAL GLY ILE ALA THR ASP PHE CYS VAL ALA SEQRES 15 B 235 TRP THR ALA LEU ASP ALA VAL LYS GLN GLY PHE LYS THR SEQRES 16 B 235 LEU VAL ILE GLU ASP ALA CYS LYS GLY ILE ASP LEU ASN SEQRES 17 B 235 GLY SER LEU GLU GLN ALA TRP GLN THR MET GLN GLN GLN SEQRES 18 B 235 GLY VAL VAL ARG ILE GLN SER THR ASP LEU LEU ASN GLU SEQRES 19 B 235 CYS HET ZN A1212 1 HET GOL A1213 12 HET GOL A1215 6 HET NIO A1216 9 HET ZN B1212 1 HET GOL B1213 6 HET GOL B1214 6 HET GOL B1215 6 HET NIO B1216 9 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM NIO NICOTINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 6 NIO 2(C6 H5 N O2) FORMUL 12 HOH *300(H2 O) HELIX 1 1 ASP A 31 THR A 34 5 4 HELIX 2 2 ILE A 35 ALA A 43 1 9 HELIX 3 3 ALA A 64 HIS A 67 5 4 HELIX 4 4 THR A 94 GLU A 98 5 5 HELIX 5 5 PHE A 158 GLN A 170 1 13 HELIX 6 6 ASP A 179 CYS A 181 5 3 HELIX 7 7 SER A 189 GLN A 200 1 12 HELIX 8 8 GLN A 206 LEU A 211 1 6 HELIX 9 9 ASP B 31 THR B 34 5 4 HELIX 10 10 ILE B 35 ALA B 43 1 9 HELIX 11 11 ALA B 64 HIS B 67 5 4 HELIX 12 12 THR B 94 GLU B 98 5 5 HELIX 13 13 PHE B 158 GLN B 170 1 13 HELIX 14 14 ASP B 179 CYS B 181 5 3 HELIX 15 15 SER B 189 GLN B 200 1 12 HELIX 16 16 GLN B 206 ASN B 212 1 7 SHEET 1 AA12 VAL A 203 ILE A 205 0 SHEET 2 AA12 LYS A 173 ILE A 177 1 O THR A 174 N VAL A 203 SHEET 3 AA12 THR A 148 VAL A 152 1 O VAL A 149 N LEU A 175 SHEET 4 AA12 SER A 10 VAL A 14 1 O ALA A 11 N TYR A 150 SHEET 5 AA12 VAL A 49 ASP A 54 1 O VAL A 50 N VAL A 14 SHEET 6 AA12 LEU A 110 LYS A 114 1 O LEU A 110 N LEU A 51 SHEET 7 AA12 LEU B 110 LYS B 114 -1 O ILE B 111 N ILE A 111 SHEET 8 AA12 ASN B 48 ASP B 54 1 O LEU B 51 N ILE B 112 SHEET 9 AA12 SER B 10 VAL B 14 1 O SER B 10 N ASN B 48 SHEET 10 AA12 THR B 148 VAL B 152 1 O THR B 148 N ALA B 11 SHEET 11 AA12 LYS B 173 ILE B 177 1 O LYS B 173 N VAL B 149 SHEET 12 AA12 VAL B 203 ILE B 205 1 O VAL B 203 N VAL B 176 SHEET 1 AB 2 THR A 75 ILE A 76 0 SHEET 2 AB 2 GLN A 83 VAL A 84 -1 O GLN A 83 N ILE A 76 SHEET 1 BA 2 THR B 75 ILE B 76 0 SHEET 2 BA 2 GLN B 83 VAL B 84 -1 O GLN B 83 N ILE B 76 LINK OD2 ASP A 54 ZN ZN A1212 1555 1555 2.19 LINK NE2 HIS A 56 ZN ZN A1212 1555 1555 2.27 LINK NE2 HIS A 89 ZN ZN A1212 1555 1555 2.28 LINK ZN ZN A1212 N NIO A1216 1555 1555 2.18 LINK ZN ZN A1212 O HOH A2141 1555 1555 2.11 LINK ZN ZN A1212 O HOH A2142 1555 1555 2.28 LINK OD1 ASP B 54 ZN ZN B1212 1555 1555 2.11 LINK NE2 HIS B 56 ZN ZN B1212 1555 1555 2.18 LINK NE2 HIS B 89 ZN ZN B1212 1555 1555 2.25 LINK ZN ZN B1212 N NIO B1216 1555 1555 2.22 LINK ZN ZN B1212 O HOH B2148 1555 1555 2.34 LINK ZN ZN B1212 O HOH B2149 1555 1555 2.27 CISPEP 1 ILE A 154 ALA A 155 0 -9.68 CISPEP 2 ILE B 154 ALA B 155 0 -9.69 SITE 1 AC1 6 ASP A 54 HIS A 56 HIS A 89 NIO A1216 SITE 2 AC1 6 HOH A2141 HOH A2142 SITE 1 AC2 6 ASP B 54 HIS B 56 HIS B 89 NIO B1216 SITE 2 AC2 6 HOH B2148 HOH B2149 SITE 1 AC3 9 LEU A 51 PHE A 99 LEU A 103 ILE A 105 SITE 2 AC3 9 ALA A 108 HOH A2070 HOH A2143 HOH A2144 SITE 3 AC3 9 ARG B 113 SITE 1 AC4 6 LEU B 51 LEU B 103 ILE B 105 GOL B1215 SITE 2 AC4 6 HOH B2078 HOH B2151 SITE 1 AC5 5 THR B 156 CYS B 181 LYS B 182 GLY B 183 SITE 2 AC5 5 HOH B2152 SITE 1 AC6 8 ARG A 113 GLN B 53 PHE B 99 ILE B 111 SITE 2 AC6 8 ARG B 113 GOL B1213 HOH B2153 HOH B2154 SITE 1 AC7 6 ASN A 187 HOH A2146 PRO B 23 ALA B 30 SITE 2 AC7 6 ASP B 31 ASP B 33 SITE 1 AC8 13 ASP A 16 PHE A 21 ASP A 54 TRP A 86 SITE 2 AC8 13 HIS A 89 TYR A 123 ILE A 154 ALA A 155 SITE 3 AC8 13 PHE A 158 CYS A 159 ZN A1212 HOH A2141 SITE 4 AC8 13 HOH A2142 SITE 1 AC9 10 ASP B 16 PHE B 21 ASP B 54 TRP B 86 SITE 2 AC9 10 HIS B 89 ILE B 154 ALA B 155 PHE B 158 SITE 3 AC9 10 CYS B 159 ZN B1212 CRYST1 46.640 46.890 59.480 113.19 88.25 115.61 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021441 0.010277 0.004065 0.00000 SCALE2 0.000000 0.023650 0.011016 0.00000 SCALE3 0.000000 0.000000 0.018555 0.00000