HEADER HYDROLASE 17-SEP-09 2WTN TITLE FERULIC ACID BOUND TO EST1E FROM BUTYRIVIBRIO TITLE 2 PROTEOCLASTICUS CAVEAT 2WTN ASN B 20 C-ALPHA IS PLANAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: EST1E; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PROTEOCLASTICUM; SOURCE 3 ORGANISM_TAXID: 43305; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ESTERASE, HYDROLASE, FERULIC ACID ESTERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.C.GOLDSTONE,V.L.ARCUS REVDAT 2 15-JUN-11 2WTN 1 JRNL REMARK REVDAT 1 19-JAN-10 2WTN 0 JRNL AUTH D.C.GOLDSTONE,S.G.VILLAS-BOAS,M.TILL,W.J.KELLY, JRNL AUTH 2 G.T.ATTWOOD,V.L.ARCUS JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A JRNL TITL 2 PROMISCUOUS FERULOYL ESTERASE (EST1E) FROM THE JRNL TITL 3 RUMEN BACTERIUM BUTYRIVIBRIO PROTEOCLASTICUS. JRNL REF PROTEINS V. 78 1457 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20058325 JRNL DOI 10.1002/PROT.22662 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 95.81 REMARK 3 NUMBER OF REFLECTIONS : 28338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.16676 REMARK 3 R VALUE (WORKING SET) : 0.16369 REMARK 3 FREE R VALUE : 0.22491 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1479 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.100 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.155 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1731 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.255 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.364 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3920 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.085 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70 REMARK 3 B22 (A**2) : -1.60 REMARK 3 B33 (A**2) : 0.53 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -1.44 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4073 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3717 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5516 ; 1.965 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8649 ; 1.066 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ; 7.619 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;36.974 ;24.860 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 698 ;14.787 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.987 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4487 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 763 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 830 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3783 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1934 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2317 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 210 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3179 ; 1.517 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1017 ; 0.321 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4028 ; 1.851 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1821 ; 2.922 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1484 ; 4.183 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2WTN COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-09. REMARK 100 THE PDBE ID CODE IS EBI-41176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU-300R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 2 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.13950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.08850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.13950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.08850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2081 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 ASN A 20 CG OD1 ND2 REMARK 470 LYS A 213 CE NZ REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 ASN B 19 CG OD1 ND2 REMARK 470 ASN B 20 OD1 ND2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 LYS B 213 CD CE NZ REMARK 470 LYS B 239 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 136 CG GLU B 136 CD 0.127 REMARK 500 GLU B 198 CB GLU B 198 CG 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 127 C - N - CD ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP A 155 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 163 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASN B 20 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 PRO B 25 C - N - CD ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG B 40 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PHE B 77 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 PHE B 77 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 -7.28 -58.51 REMARK 500 ASN A 20 72.32 38.13 REMARK 500 THR A 97 -94.89 -88.92 REMARK 500 SER A 105 -121.13 59.58 REMARK 500 SER A 129 61.97 38.55 REMARK 500 ALA A 159 -164.12 -167.76 REMARK 500 HIS A 230 55.77 -144.50 REMARK 500 ASN B 19 -143.17 15.35 REMARK 500 ASN B 20 -81.37 -46.20 REMARK 500 THR B 97 -84.84 -88.71 REMARK 500 SER B 105 -117.87 68.06 REMARK 500 SER B 129 60.82 39.80 REMARK 500 ALA B 159 -163.80 -115.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 18 ASN B 19 43.81 REMARK 500 ASN B 19 ASN B 20 66.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN B 19 19.9 L L OUTSIDE RANGE REMARK 500 ASN B 20 1.9 L L EXPECTING SP3 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FER B1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FER A1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1253 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WTM RELATED DB: PDB REMARK 900 EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS DBREF 2WTN A -2 248 PDB 2WTN 2WTN -2 248 DBREF 2WTN B -2 248 PDB 2WTN 2WTN -2 248 SEQRES 1 A 251 SER GLY ALA MET TYR ILE ASP CYS ASP GLY ILE LYS LEU SEQRES 2 A 251 ASN ALA TYR LEU ASP MET PRO LYS ASN ASN PRO GLU LYS SEQRES 3 A 251 CYS PRO LEU CYS ILE ILE ILE HIS GLY PHE THR GLY HIS SEQRES 4 A 251 SER GLU GLU ARG HIS ILE VAL ALA VAL GLN GLU THR LEU SEQRES 5 A 251 ASN GLU ILE GLY VAL ALA THR LEU ARG ALA ASP MET TYR SEQRES 6 A 251 GLY HIS GLY LYS SER ASP GLY LYS PHE GLU ASP HIS THR SEQRES 7 A 251 LEU PHE LYS TRP LEU THR ASN ILE LEU ALA VAL VAL ASP SEQRES 8 A 251 TYR ALA LYS LYS LEU ASP PHE VAL THR ASP ILE TYR MET SEQRES 9 A 251 ALA GLY HIS SER GLN GLY GLY LEU SER VAL MET LEU ALA SEQRES 10 A 251 ALA ALA MET GLU ARG ASP ILE ILE LYS ALA LEU ILE PRO SEQRES 11 A 251 LEU SER PRO ALA ALA MET ILE PRO GLU ILE ALA ARG THR SEQRES 12 A 251 GLY GLU LEU LEU GLY LEU LYS PHE ASP PRO GLU ASN ILE SEQRES 13 A 251 PRO ASP GLU LEU ASP ALA TRP ASP GLY ARG LYS LEU LYS SEQRES 14 A 251 GLY ASN TYR VAL ARG VAL ALA GLN THR ILE ARG VAL GLU SEQRES 15 A 251 ASP PHE VAL ASP LYS TYR THR LYS PRO VAL LEU ILE VAL SEQRES 16 A 251 HIS GLY ASP GLN ASP GLU ALA VAL PRO TYR GLU ALA SER SEQRES 17 A 251 VAL ALA PHE SER LYS GLN TYR LYS ASN CYS LYS LEU VAL SEQRES 18 A 251 THR ILE PRO GLY ASP THR HIS CYS TYR ASP HIS HIS LEU SEQRES 19 A 251 GLU LEU VAL THR GLU ALA VAL LYS GLU PHE MET LEU GLU SEQRES 20 A 251 GLN ILE ALA LYS SEQRES 1 B 251 SER GLY ALA MET TYR ILE ASP CYS ASP GLY ILE LYS LEU SEQRES 2 B 251 ASN ALA TYR LEU ASP MET PRO LYS ASN ASN PRO GLU LYS SEQRES 3 B 251 CYS PRO LEU CYS ILE ILE ILE HIS GLY PHE THR GLY HIS SEQRES 4 B 251 SER GLU GLU ARG HIS ILE VAL ALA VAL GLN GLU THR LEU SEQRES 5 B 251 ASN GLU ILE GLY VAL ALA THR LEU ARG ALA ASP MET TYR SEQRES 6 B 251 GLY HIS GLY LYS SER ASP GLY LYS PHE GLU ASP HIS THR SEQRES 7 B 251 LEU PHE LYS TRP LEU THR ASN ILE LEU ALA VAL VAL ASP SEQRES 8 B 251 TYR ALA LYS LYS LEU ASP PHE VAL THR ASP ILE TYR MET SEQRES 9 B 251 ALA GLY HIS SER GLN GLY GLY LEU SER VAL MET LEU ALA SEQRES 10 B 251 ALA ALA MET GLU ARG ASP ILE ILE LYS ALA LEU ILE PRO SEQRES 11 B 251 LEU SER PRO ALA ALA MET ILE PRO GLU ILE ALA ARG THR SEQRES 12 B 251 GLY GLU LEU LEU GLY LEU LYS PHE ASP PRO GLU ASN ILE SEQRES 13 B 251 PRO ASP GLU LEU ASP ALA TRP ASP GLY ARG LYS LEU LYS SEQRES 14 B 251 GLY ASN TYR VAL ARG VAL ALA GLN THR ILE ARG VAL GLU SEQRES 15 B 251 ASP PHE VAL ASP LYS TYR THR LYS PRO VAL LEU ILE VAL SEQRES 16 B 251 HIS GLY ASP GLN ASP GLU ALA VAL PRO TYR GLU ALA SER SEQRES 17 B 251 VAL ALA PHE SER LYS GLN TYR LYS ASN CYS LYS LEU VAL SEQRES 18 B 251 THR ILE PRO GLY ASP THR HIS CYS TYR ASP HIS HIS LEU SEQRES 19 B 251 GLU LEU VAL THR GLU ALA VAL LYS GLU PHE MET LEU GLU SEQRES 20 B 251 GLN ILE ALA LYS HET GOL A1249 6 HET FER B1249 14 HET FER A1250 14 HET GOL B1250 6 HET GOL A1251 6 HET GOL B1251 6 HET GOL B1252 6 HET GOL A1252 6 HET PO4 A1253 5 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM FER 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC HETNAM 2 FER ACID HETSYN FER FERULIC ACID FORMUL 3 PO4 O4 P 3- FORMUL 4 GOL 6(C3 H8 O3) FORMUL 5 FER 2(C10 H10 O4) FORMUL 6 HOH *202(H2 O) HELIX 1 1 GLU A 39 ILE A 52 1 14 HELIX 2 2 LYS A 70 HIS A 74 5 5 HELIX 3 3 THR A 75 LYS A 91 1 17 HELIX 4 4 LEU A 109 GLU A 118 1 10 HELIX 5 5 MET A 133 THR A 140 1 8 HELIX 6 6 ASN A 168 GLN A 174 1 7 HELIX 7 7 ARG A 177 TYR A 185 1 9 HELIX 8 8 PRO A 201 TYR A 212 1 12 HELIX 9 9 HIS A 230 ALA A 247 1 18 HELIX 10 10 GLU B 39 ILE B 52 1 14 HELIX 11 11 LYS B 70 HIS B 74 5 5 HELIX 12 12 THR B 75 LYS B 91 1 17 HELIX 13 13 LEU B 109 GLU B 118 1 10 HELIX 14 14 MET B 133 THR B 140 1 8 HELIX 15 15 ASN B 168 GLN B 174 1 7 HELIX 16 16 ARG B 177 TYR B 185 1 9 HELIX 17 17 PRO B 201 TYR B 212 1 12 HELIX 18 18 HIS B 230 ALA B 247 1 18 SHEET 1 AA 6 MET A 1 ASP A 4 0 SHEET 2 AA 6 LYS A 9 ASP A 15 -1 O LEU A 10 N ILE A 3 SHEET 3 AA 6 ALA A 55 ALA A 59 -1 O THR A 56 N ASP A 15 SHEET 4 AA 6 CYS A 24 ILE A 30 1 O PRO A 25 N ALA A 55 SHEET 5 AA 6 VAL A 96 ALA A 102 1 N THR A 97 O CYS A 24 SHEET 6 AA 6 ILE A 122 LEU A 125 1 N LYS A 123 O ILE A 99 SHEET 1 AB 2 LEU A 157 ASP A 158 0 SHEET 2 AB 2 LYS A 164 LEU A 165 -1 O LEU A 165 N LEU A 157 SHEET 1 AC 2 VAL A 189 HIS A 193 0 SHEET 2 AC 2 CYS A 215 THR A 219 1 O LYS A 216 N ILE A 191 SHEET 1 BA 6 MET B 1 ASP B 4 0 SHEET 2 BA 6 LYS B 9 ASP B 15 -1 O LEU B 10 N ILE B 3 SHEET 3 BA 6 ALA B 55 ALA B 59 -1 O THR B 56 N ASP B 15 SHEET 4 BA 6 CYS B 24 ILE B 30 1 O PRO B 25 N ALA B 55 SHEET 5 BA 6 VAL B 96 ALA B 102 1 N THR B 97 O CYS B 24 SHEET 6 BA 6 ILE B 122 LEU B 125 1 N LYS B 123 O ILE B 99 SHEET 1 BB 2 LEU B 157 ASP B 158 0 SHEET 2 BB 2 LYS B 164 LEU B 165 -1 O LEU B 165 N LEU B 157 SHEET 1 BC 2 VAL B 189 HIS B 193 0 SHEET 2 BC 2 CYS B 215 THR B 219 1 O LYS B 216 N ILE B 191 CISPEP 1 ASN B 20 PRO B 21 0 -15.09 SITE 1 AC1 7 HIS A 31 GLY A 32 GLU A 39 HIS A 41 SITE 2 AC1 7 HIS A 104 SER A 105 FER A1250 SITE 1 AC2 12 GLY B 32 PHE B 33 SER B 105 GLN B 106 SITE 2 AC2 12 MET B 133 LEU B 143 LEU B 144 TRP B 160 SITE 3 AC2 12 TYR B 169 HIS B 225 HOH B2089 HOH B2090 SITE 1 AC3 7 GLY A 32 PHE A 33 THR A 34 SER A 105 SITE 2 AC3 7 GLN A 106 TRP A 160 GOL A1249 SITE 1 AC4 8 GLN A 174 THR A 175 HOH A2068 HOH A2069 SITE 2 AC4 8 ARG B 119 ASP B 180 PHE B 181 HOH B2091 SITE 1 AC5 9 ASP A 155 LYS A 166 GLY A 167 ASN A 168 SITE 2 AC5 9 HOH A2105 HOH A2106 ASP B 88 LYS B 91 SITE 3 AC5 9 HOH B2034 SITE 1 AC6 7 ASP A 88 LYS A 91 ASP B 155 LYS B 166 SITE 2 AC6 7 GLY B 167 ASN B 168 HOH B2092 SITE 1 AC7 7 HOH A2027 ASP B 4 ASP B 6 ALA B 85 SITE 2 AC7 7 HOH B2033 HOH B2093 HOH B2094 SITE 1 AC8 8 ARG A 119 ASP A 180 PHE A 181 HOH A2107 SITE 2 AC8 8 HOH A2108 GLN B 174 THR B 175 HOH B2061 SITE 1 AC9 6 GLY A 145 LEU A 146 LYS A 147 LYS B 147 SITE 2 AC9 6 ASP B 149 PRO B 150 CRYST1 144.279 48.177 97.035 90.00 127.74 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006931 0.000000 0.005365 0.00000 SCALE2 0.000000 0.020757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013032 0.00000