data_2WTY # _entry.id 2WTY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2WTY PDBE EBI-41242 WWPDB D_1290041242 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2WT7 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE BZIP HETERODIMERIC COMPLEX MAFB:CFOS BOUND TO DNA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2WTY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2009-09-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Consani Textor, L.' 1 'Holton, S.' 2 'Wilmanns, M.' 3 # _citation.id primary _citation.title 'Design of a bZIP Transcription Factor with Homo/Heterodimer-Induced DNA-Binding Preference.' _citation.journal_abbrev Structure _citation.journal_volume 22 _citation.page_first 466 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24530283 _citation.pdbx_database_id_DOI 10.1016/J.STR.2013.12.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Pogenberg, V.' 1 primary 'Consani Textor, L.' 2 primary 'Vanhille, L.' 3 primary 'Holton, S.J.' 4 primary 'Sieweke, M.H.' 5 primary 'Wilmanns, M.' 6 # _cell.entry_id 2WTY _cell.length_a 41.150 _cell.length_b 49.820 _cell.length_c 170.370 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WTY _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRANSCRIPTION FACTOR MAFB' 11697.446 2 ? YES 'RESIDUES 211-306' ? 2 polymer syn ;DNA (5'-D(*TP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP *GP*CP*AP*AP*AP*T)-3') ; 6116.992 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*AP*TP*TP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP *GP*CP*AP*AP*TP*T)-3') ; 6138.988 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 71 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'V-MAF MUSCULOAPONEUROTIC FIBROSARCOMA ONCOGENE HOMOLOG B, TRANSCRIPTION FACTOR MAF-1, SEGMENTATION PROTEIN KR, KREISLER, MAF-B' 2 'T-MARE BINDING SITE' 3 'T-MARE BINDING SITE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR ERDAYKVKSEKLANSGR ; ;MFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR ERDAYKVKSEKLANSGR ; A,B ? 2 polydeoxyribonucleotide no no '(DT)(DA)(DA)(DT)(DT)(DG)(DC)(DT)(DG)(DA)(DC)(DT)(DC)(DA)(DG)(DC)(DA)(DA)(DA)(DT)' TAATTGCTGACTCAGCAAAT C ? 3 polydeoxyribonucleotide no no '(DT)(DA)(DT)(DT)(DT)(DG)(DC)(DT)(DG)(DA)(DG)(DT)(DC)(DA)(DG)(DC)(DA)(DA)(DT)(DT)' TATTTGCTGAGTCAGCAATT D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 SER n 1 4 ASP n 1 5 ASP n 1 6 GLN n 1 7 LEU n 1 8 VAL n 1 9 SER n 1 10 MET n 1 11 SER n 1 12 VAL n 1 13 ARG n 1 14 GLU n 1 15 LEU n 1 16 ASN n 1 17 ARG n 1 18 HIS n 1 19 LEU n 1 20 ARG n 1 21 GLY n 1 22 PHE n 1 23 THR n 1 24 LYS n 1 25 ASP n 1 26 GLU n 1 27 VAL n 1 28 ILE n 1 29 ARG n 1 30 LEU n 1 31 LYS n 1 32 GLN n 1 33 LYS n 1 34 ARG n 1 35 ARG n 1 36 THR n 1 37 LEU n 1 38 LYS n 1 39 ASN n 1 40 ARG n 1 41 GLY n 1 42 TYR n 1 43 ALA n 1 44 GLN n 1 45 SER n 1 46 CYS n 1 47 ARG n 1 48 TYR n 1 49 LYS n 1 50 ARG n 1 51 VAL n 1 52 GLN n 1 53 GLN n 1 54 LYS n 1 55 HIS n 1 56 HIS n 1 57 LEU n 1 58 GLU n 1 59 ASN n 1 60 GLU n 1 61 LYS n 1 62 THR n 1 63 GLN n 1 64 LEU n 1 65 ILE n 1 66 GLN n 1 67 GLN n 1 68 VAL n 1 69 GLU n 1 70 GLN n 1 71 LEU n 1 72 LYS n 1 73 GLN n 1 74 GLU n 1 75 VAL n 1 76 SER n 1 77 ARG n 1 78 LEU n 1 79 ALA n 1 80 ARG n 1 81 GLU n 1 82 ARG n 1 83 ASP n 1 84 ALA n 1 85 TYR n 1 86 LYS n 1 87 VAL n 1 88 LYS n 1 89 SER n 1 90 GLU n 1 91 LYS n 1 92 LEU n 1 93 ALA n 1 94 ASN n 1 95 SER n 1 96 GLY n 1 97 ARG n 2 1 DT n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DT n 2 6 DG n 2 7 DC n 2 8 DT n 2 9 DG n 2 10 DA n 2 11 DC n 2 12 DT n 2 13 DC n 2 14 DA n 2 15 DG n 2 16 DC n 2 17 DA n 2 18 DA n 2 19 DA n 2 20 DT n 3 1 DT n 3 2 DA n 3 3 DT n 3 4 DT n 3 5 DT n 3 6 DG n 3 7 DC n 3 8 DT n 3 9 DG n 3 10 DA n 3 11 DG n 3 12 DT n 3 13 DC n 3 14 DA n 3 15 DG n 3 16 DC n 3 17 DA n 3 18 DA n 3 19 DT n 3 20 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'CODON PLUS-RIL' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP MAFB_MOUSE 1 ? ? P54841 ? 2 PDB 2WTY 2 ? ? 2WTY ? 3 PDB 2WTY 3 ? ? 2WTY ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2WTY A 2 ? 97 ? P54841 211 ? 306 ? 211 306 2 1 2WTY B 2 ? 97 ? P54841 211 ? 306 ? 211 306 3 2 2WTY C 1 ? 20 ? 2WTY 0 ? 19 ? 0 19 4 3 2WTY D 1 ? 20 ? 2WTY 0 ? 19 ? 0 19 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2WTY MET A 1 ? UNP P54841 ? ? 'expression tag' 210 1 1 2WTY SER A 89 ? UNP P54841 CYS 298 'engineered mutation' 298 2 1 2WTY ARG A 97 ? UNP P54841 PHE 306 'engineered mutation' 306 3 2 2WTY MET B 1 ? UNP P54841 ? ? 'expression tag' 210 4 2 2WTY SER B 89 ? UNP P54841 CYS 298 'engineered mutation' 298 5 2 2WTY ARG B 97 ? UNP P54841 PHE 306 'engineered mutation' 306 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2WTY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 51.00 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8726 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.8726 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2WTY _reflns.observed_criterion_sigma_I 2.200 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.000 _reflns.d_resolution_high 2.900 _reflns.number_obs 8174 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.10000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.8000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.900 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2WTY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7905 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 170.37 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.237 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.275 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.60 _refine.ls_number_reflns_R_free 383 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.897 _refine.correlation_coeff_Fo_to_Fc_free 0.851 _refine.B_iso_mean 36.08 _refine.aniso_B[1][1] 1.84000 _refine.aniso_B[2][2] -0.55000 _refine.aniso_B[3][3] -1.29000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.453 _refine.overall_SU_ML 0.350 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 19.072 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1588 _refine_hist.pdbx_number_atoms_nucleic_acid 799 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 2459 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 170.37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.021 ? 2494 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.258 2.368 ? 3499 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.324 5.000 ? 189 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.518 22.727 ? 88 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.849 15.000 ? 352 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.109 15.000 ? 25 'X-RAY DIFFRACTION' ? r_chiral_restr 0.065 0.200 ? 385 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1584 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.174 1.500 ? 947 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.805 2.000 ? 1516 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.805 3.000 ? 1547 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.471 4.500 ? 1983 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 572 _refine_ls_shell.R_factor_R_work 0.3590 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.4930 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2WTY _struct.title 'Crystal structure of the homodimeric MafB in complex with the T-MARE binding site' _struct.pdbx_descriptor 'TRANSCRIPTION FACTOR MAFB' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2WTY _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;REPRESSOR, DNA-BINDING, TRANSCRIPTION, PROTO-ONCOGENE, TRANSCRIPTION REGULATION, TUMOR SUPPRESSOR, DNA, B-ZIP, NUCLEUS, ACTIVATOR, AP-1 BINDING SITE, PROTEIN-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 4 ? MET A 10 ? ASP A 213 MET A 219 1 ? 7 HELX_P HELX_P2 2 SER A 11 ? ARG A 20 ? SER A 220 ARG A 229 1 ? 10 HELX_P HELX_P3 3 THR A 23 ? ALA A 93 ? THR A 232 ALA A 302 1 ? 71 HELX_P HELX_P4 4 ASP B 4 ? MET B 10 ? ASP B 213 MET B 219 1 ? 7 HELX_P HELX_P5 5 SER B 11 ? ARG B 20 ? SER B 220 ARG B 229 1 ? 10 HELX_P HELX_P6 6 THR B 23 ? SER B 95 ? THR B 232 SER B 304 1 ? 73 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 20 O4 ? ? C DA 1 D DT 19 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? hydrog2 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 19 N3 ? ? C DA 2 D DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 19 O4 ? ? C DA 2 D DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 18 N1 ? ? C DT 3 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 18 N6 ? ? C DT 3 D DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 17 N1 ? ? C DT 4 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 17 N6 ? ? C DT 4 D DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 16 N3 ? ? C DG 5 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 16 O2 ? ? C DG 5 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 16 N4 ? ? C DG 5 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 15 N1 ? ? C DC 6 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 15 O6 ? ? C DC 6 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 15 N2 ? ? C DC 6 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 14 N1 ? ? C DT 7 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 14 N6 ? ? C DT 7 D DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 13 N3 ? ? C DG 8 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 13 O2 ? ? C DG 8 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 13 N4 ? ? C DG 8 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DA 10 N1 ? ? ? 1_555 D DT 12 N3 ? ? C DA 9 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DT 12 O4 ? ? C DA 9 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 11 N1 ? ? C DC 10 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 11 O6 ? ? C DC 10 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 11 N2 ? ? C DC 10 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DT 12 N3 ? ? ? 1_555 D DA 10 N1 ? ? C DT 11 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DT 12 O4 ? ? ? 1_555 D DA 10 N6 ? ? C DT 11 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DC 13 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 12 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C DC 13 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 12 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DC 13 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 12 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DA 14 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 13 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DA 14 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 13 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DG 15 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 14 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DG 15 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 14 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C DG 15 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 14 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C DC 16 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 15 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C DC 16 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 15 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C DC 16 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 15 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? C DA 17 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 16 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? C DA 17 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 16 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? C DA 18 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 17 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? C DA 18 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 17 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? C DA 19 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 18 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? C DA 19 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 18 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? C DT 20 N3 ? ? ? 1_555 D DA 2 N1 ? ? C DT 19 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? C DT 20 O4 ? ? ? 1_555 D DA 2 N6 ? ? C DT 19 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 3 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 212 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASP _struct_mon_prot_cis.pdbx_label_seq_id_2 4 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASP _struct_mon_prot_cis.pdbx_auth_seq_id_2 213 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 8.45 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE MG D 20' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HIS B 56 ? HIS B 265 . ? 1_545 ? 2 AC1 2 DT D 3 ? DT D 2 . ? 1_555 ? # _database_PDB_matrix.entry_id 2WTY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2WTY _atom_sites.fract_transf_matrix[1][1] 0.024301 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020072 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005870 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 210 ? ? ? A . n A 1 2 PHE 2 211 ? ? ? A . n A 1 3 SER 3 212 212 SER SER A . n A 1 4 ASP 4 213 213 ASP ASP A . n A 1 5 ASP 5 214 214 ASP ASP A . n A 1 6 GLN 6 215 215 GLN GLN A . n A 1 7 LEU 7 216 216 LEU LEU A . n A 1 8 VAL 8 217 217 VAL VAL A . n A 1 9 SER 9 218 218 SER SER A . n A 1 10 MET 10 219 219 MET MET A . n A 1 11 SER 11 220 220 SER SER A . n A 1 12 VAL 12 221 221 VAL VAL A . n A 1 13 ARG 13 222 222 ARG ARG A . n A 1 14 GLU 14 223 223 GLU GLU A . n A 1 15 LEU 15 224 224 LEU LEU A . n A 1 16 ASN 16 225 225 ASN ASN A . n A 1 17 ARG 17 226 226 ARG ARG A . n A 1 18 HIS 18 227 227 HIS HIS A . n A 1 19 LEU 19 228 228 LEU LEU A . n A 1 20 ARG 20 229 229 ARG ARG A . n A 1 21 GLY 21 230 230 GLY GLY A . n A 1 22 PHE 22 231 231 PHE PHE A . n A 1 23 THR 23 232 232 THR THR A . n A 1 24 LYS 24 233 233 LYS LYS A . n A 1 25 ASP 25 234 234 ASP ASP A . n A 1 26 GLU 26 235 235 GLU GLU A . n A 1 27 VAL 27 236 236 VAL VAL A . n A 1 28 ILE 28 237 237 ILE ILE A . n A 1 29 ARG 29 238 238 ARG ARG A . n A 1 30 LEU 30 239 239 LEU LEU A . n A 1 31 LYS 31 240 240 LYS LYS A . n A 1 32 GLN 32 241 241 GLN GLN A . n A 1 33 LYS 33 242 242 LYS LYS A . n A 1 34 ARG 34 243 243 ARG ARG A . n A 1 35 ARG 35 244 244 ARG ARG A . n A 1 36 THR 36 245 245 THR THR A . n A 1 37 LEU 37 246 246 LEU LEU A . n A 1 38 LYS 38 247 247 LYS LYS A . n A 1 39 ASN 39 248 248 ASN ASN A . n A 1 40 ARG 40 249 249 ARG ARG A . n A 1 41 GLY 41 250 250 GLY GLY A . n A 1 42 TYR 42 251 251 TYR TYR A . n A 1 43 ALA 43 252 252 ALA ALA A . n A 1 44 GLN 44 253 253 GLN GLN A . n A 1 45 SER 45 254 254 SER SER A . n A 1 46 CYS 46 255 255 CYS CYS A . n A 1 47 ARG 47 256 256 ARG ARG A . n A 1 48 TYR 48 257 257 TYR TYR A . n A 1 49 LYS 49 258 258 LYS LYS A . n A 1 50 ARG 50 259 259 ARG ARG A . n A 1 51 VAL 51 260 260 VAL VAL A . n A 1 52 GLN 52 261 261 GLN GLN A . n A 1 53 GLN 53 262 262 GLN GLN A . n A 1 54 LYS 54 263 263 LYS LYS A . n A 1 55 HIS 55 264 264 HIS HIS A . n A 1 56 HIS 56 265 265 HIS HIS A . n A 1 57 LEU 57 266 266 LEU LEU A . n A 1 58 GLU 58 267 267 GLU GLU A . n A 1 59 ASN 59 268 268 ASN ASN A . n A 1 60 GLU 60 269 269 GLU GLU A . n A 1 61 LYS 61 270 270 LYS LYS A . n A 1 62 THR 62 271 271 THR THR A . n A 1 63 GLN 63 272 272 GLN GLN A . n A 1 64 LEU 64 273 273 LEU LEU A . n A 1 65 ILE 65 274 274 ILE ILE A . n A 1 66 GLN 66 275 275 GLN GLN A . n A 1 67 GLN 67 276 276 GLN GLN A . n A 1 68 VAL 68 277 277 VAL VAL A . n A 1 69 GLU 69 278 278 GLU GLU A . n A 1 70 GLN 70 279 279 GLN GLN A . n A 1 71 LEU 71 280 280 LEU LEU A . n A 1 72 LYS 72 281 281 LYS LYS A . n A 1 73 GLN 73 282 282 GLN GLN A . n A 1 74 GLU 74 283 283 GLU GLU A . n A 1 75 VAL 75 284 284 VAL VAL A . n A 1 76 SER 76 285 285 SER SER A . n A 1 77 ARG 77 286 286 ARG ARG A . n A 1 78 LEU 78 287 287 LEU LEU A . n A 1 79 ALA 79 288 288 ALA ALA A . n A 1 80 ARG 80 289 289 ARG ARG A . n A 1 81 GLU 81 290 290 GLU GLU A . n A 1 82 ARG 82 291 291 ARG ARG A . n A 1 83 ASP 83 292 292 ASP ASP A . n A 1 84 ALA 84 293 293 ALA ALA A . n A 1 85 TYR 85 294 294 TYR TYR A . n A 1 86 LYS 86 295 295 LYS LYS A . n A 1 87 VAL 87 296 296 VAL VAL A . n A 1 88 LYS 88 297 297 LYS LYS A . n A 1 89 SER 89 298 298 SER SER A . n A 1 90 GLU 90 299 299 GLU GLU A . n A 1 91 LYS 91 300 300 LYS LYS A . n A 1 92 LEU 92 301 301 LEU LEU A . n A 1 93 ALA 93 302 302 ALA ALA A . n A 1 94 ASN 94 303 303 ASN ASN A . n A 1 95 SER 95 304 304 SER SER A . n A 1 96 GLY 96 305 305 GLY GLY A . n A 1 97 ARG 97 306 ? ? ? A . n B 1 1 MET 1 210 210 MET MET B . n B 1 2 PHE 2 211 211 PHE PHE B . n B 1 3 SER 3 212 212 SER SER B . n B 1 4 ASP 4 213 213 ASP ASP B . n B 1 5 ASP 5 214 214 ASP ASP B . n B 1 6 GLN 6 215 215 GLN GLN B . n B 1 7 LEU 7 216 216 LEU LEU B . n B 1 8 VAL 8 217 217 VAL VAL B . n B 1 9 SER 9 218 218 SER SER B . n B 1 10 MET 10 219 219 MET MET B . n B 1 11 SER 11 220 220 SER SER B . n B 1 12 VAL 12 221 221 VAL VAL B . n B 1 13 ARG 13 222 222 ARG ARG B . n B 1 14 GLU 14 223 223 GLU GLU B . n B 1 15 LEU 15 224 224 LEU LEU B . n B 1 16 ASN 16 225 225 ASN ASN B . n B 1 17 ARG 17 226 226 ARG ARG B . n B 1 18 HIS 18 227 227 HIS HIS B . n B 1 19 LEU 19 228 228 LEU LEU B . n B 1 20 ARG 20 229 229 ARG ARG B . n B 1 21 GLY 21 230 230 GLY GLY B . n B 1 22 PHE 22 231 231 PHE PHE B . n B 1 23 THR 23 232 232 THR THR B . n B 1 24 LYS 24 233 233 LYS LYS B . n B 1 25 ASP 25 234 234 ASP ASP B . n B 1 26 GLU 26 235 235 GLU GLU B . n B 1 27 VAL 27 236 236 VAL VAL B . n B 1 28 ILE 28 237 237 ILE ILE B . n B 1 29 ARG 29 238 238 ARG ARG B . n B 1 30 LEU 30 239 239 LEU LEU B . n B 1 31 LYS 31 240 240 LYS LYS B . n B 1 32 GLN 32 241 241 GLN GLN B . n B 1 33 LYS 33 242 242 LYS LYS B . n B 1 34 ARG 34 243 243 ARG ARG B . n B 1 35 ARG 35 244 244 ARG ARG B . n B 1 36 THR 36 245 245 THR THR B . n B 1 37 LEU 37 246 246 LEU LEU B . n B 1 38 LYS 38 247 247 LYS LYS B . n B 1 39 ASN 39 248 248 ASN ASN B . n B 1 40 ARG 40 249 249 ARG ARG B . n B 1 41 GLY 41 250 250 GLY GLY B . n B 1 42 TYR 42 251 251 TYR TYR B . n B 1 43 ALA 43 252 252 ALA ALA B . n B 1 44 GLN 44 253 253 GLN GLN B . n B 1 45 SER 45 254 254 SER SER B . n B 1 46 CYS 46 255 255 CYS CYS B . n B 1 47 ARG 47 256 256 ARG ARG B . n B 1 48 TYR 48 257 257 TYR TYR B . n B 1 49 LYS 49 258 258 LYS LYS B . n B 1 50 ARG 50 259 259 ARG ARG B . n B 1 51 VAL 51 260 260 VAL VAL B . n B 1 52 GLN 52 261 261 GLN GLN B . n B 1 53 GLN 53 262 262 GLN GLN B . n B 1 54 LYS 54 263 263 LYS LYS B . n B 1 55 HIS 55 264 264 HIS HIS B . n B 1 56 HIS 56 265 265 HIS HIS B . n B 1 57 LEU 57 266 266 LEU LEU B . n B 1 58 GLU 58 267 267 GLU GLU B . n B 1 59 ASN 59 268 268 ASN ASN B . n B 1 60 GLU 60 269 269 GLU GLU B . n B 1 61 LYS 61 270 270 LYS LYS B . n B 1 62 THR 62 271 271 THR THR B . n B 1 63 GLN 63 272 272 GLN GLN B . n B 1 64 LEU 64 273 273 LEU LEU B . n B 1 65 ILE 65 274 274 ILE ILE B . n B 1 66 GLN 66 275 275 GLN GLN B . n B 1 67 GLN 67 276 276 GLN GLN B . n B 1 68 VAL 68 277 277 VAL VAL B . n B 1 69 GLU 69 278 278 GLU GLU B . n B 1 70 GLN 70 279 279 GLN GLN B . n B 1 71 LEU 71 280 280 LEU LEU B . n B 1 72 LYS 72 281 281 LYS LYS B . n B 1 73 GLN 73 282 282 GLN GLN B . n B 1 74 GLU 74 283 283 GLU GLU B . n B 1 75 VAL 75 284 284 VAL VAL B . n B 1 76 SER 76 285 285 SER SER B . n B 1 77 ARG 77 286 286 ARG ARG B . n B 1 78 LEU 78 287 287 LEU LEU B . n B 1 79 ALA 79 288 288 ALA ALA B . n B 1 80 ARG 80 289 289 ARG ARG B . n B 1 81 GLU 81 290 290 GLU GLU B . n B 1 82 ARG 82 291 291 ARG ARG B . n B 1 83 ASP 83 292 292 ASP ASP B . n B 1 84 ALA 84 293 293 ALA ALA B . n B 1 85 TYR 85 294 294 TYR TYR B . n B 1 86 LYS 86 295 295 LYS LYS B . n B 1 87 VAL 87 296 296 VAL VAL B . n B 1 88 LYS 88 297 297 LYS LYS B . n B 1 89 SER 89 298 298 SER SER B . n B 1 90 GLU 90 299 299 GLU GLU B . n B 1 91 LYS 91 300 300 LYS LYS B . n B 1 92 LEU 92 301 301 LEU LEU B . n B 1 93 ALA 93 302 302 ALA ALA B . n B 1 94 ASN 94 303 303 ASN ASN B . n B 1 95 SER 95 304 304 SER SER B . n B 1 96 GLY 96 305 305 GLY GLY B . n B 1 97 ARG 97 306 306 ARG ARG B . n C 2 1 DT 1 0 0 DT DT C . n C 2 2 DA 2 1 1 DA DA C . n C 2 3 DA 3 2 2 DA DA C . n C 2 4 DT 4 3 3 DT DT C . n C 2 5 DT 5 4 4 DT DT C . n C 2 6 DG 6 5 5 DG DG C . n C 2 7 DC 7 6 6 DC DC C . n C 2 8 DT 8 7 7 DT DT C . n C 2 9 DG 9 8 8 DG DG C . n C 2 10 DA 10 9 9 DA DA C . n C 2 11 DC 11 10 10 DC DC C . n C 2 12 DT 12 11 11 DT DT C . n C 2 13 DC 13 12 12 DC DC C . n C 2 14 DA 14 13 13 DA DA C . n C 2 15 DG 15 14 14 DG DG C . n C 2 16 DC 16 15 15 DC DC C . n C 2 17 DA 17 16 16 DA DA C . n C 2 18 DA 18 17 17 DA DA C . n C 2 19 DA 19 18 18 DA DA C . n C 2 20 DT 20 19 19 DT DT C . n D 3 1 DT 1 0 ? ? ? D . n D 3 2 DA 2 1 1 DA DA D . n D 3 3 DT 3 2 2 DT DT D . n D 3 4 DT 4 3 3 DT DT D . n D 3 5 DT 5 4 4 DT DT D . n D 3 6 DG 6 5 5 DG DG D . n D 3 7 DC 7 6 6 DC DC D . n D 3 8 DT 8 7 7 DT DT D . n D 3 9 DG 9 8 8 DG DG D . n D 3 10 DA 10 9 9 DA DA D . n D 3 11 DG 11 10 10 DG DG D . n D 3 12 DT 12 11 11 DT DT D . n D 3 13 DC 13 12 12 DC DC D . n D 3 14 DA 14 13 13 DA DA D . n D 3 15 DG 15 14 14 DG DG D . n D 3 16 DC 16 15 15 DC DC D . n D 3 17 DA 17 16 16 DA DA D . n D 3 18 DA 18 17 17 DA DA D . n D 3 19 DT 19 18 18 DT DT D . n D 3 20 DT 20 19 19 DT DT D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG 1 20 20 MG MG D . F 5 HOH 1 2001 2001 HOH HOH A . F 5 HOH 2 2002 2002 HOH HOH A . F 5 HOH 3 2003 2003 HOH HOH A . F 5 HOH 4 2004 2004 HOH HOH A . F 5 HOH 5 2005 2005 HOH HOH A . F 5 HOH 6 2006 2006 HOH HOH A . F 5 HOH 7 2007 2007 HOH HOH A . F 5 HOH 8 2008 2008 HOH HOH A . F 5 HOH 9 2009 2009 HOH HOH A . F 5 HOH 10 2010 2010 HOH HOH A . F 5 HOH 11 2011 2011 HOH HOH A . F 5 HOH 12 2012 2012 HOH HOH A . F 5 HOH 13 2013 2013 HOH HOH A . F 5 HOH 14 2014 2014 HOH HOH A . F 5 HOH 15 2015 2015 HOH HOH A . F 5 HOH 16 2016 2016 HOH HOH A . F 5 HOH 17 2017 2017 HOH HOH A . F 5 HOH 18 2018 2018 HOH HOH A . F 5 HOH 19 2019 2019 HOH HOH A . F 5 HOH 20 2020 2020 HOH HOH A . F 5 HOH 21 2021 2021 HOH HOH A . F 5 HOH 22 2022 2022 HOH HOH A . F 5 HOH 23 2023 2023 HOH HOH A . F 5 HOH 24 2024 2024 HOH HOH A . F 5 HOH 25 2025 2025 HOH HOH A . F 5 HOH 26 2026 2026 HOH HOH A . F 5 HOH 27 2027 2027 HOH HOH A . G 5 HOH 1 2001 2001 HOH HOH B . G 5 HOH 2 2002 2002 HOH HOH B . G 5 HOH 3 2003 2003 HOH HOH B . G 5 HOH 4 2004 2004 HOH HOH B . G 5 HOH 5 2005 2005 HOH HOH B . G 5 HOH 6 2006 2006 HOH HOH B . G 5 HOH 7 2007 2007 HOH HOH B . G 5 HOH 8 2008 2008 HOH HOH B . G 5 HOH 9 2009 2009 HOH HOH B . G 5 HOH 10 2010 2010 HOH HOH B . G 5 HOH 11 2011 2011 HOH HOH B . G 5 HOH 12 2012 2012 HOH HOH B . G 5 HOH 13 2013 2013 HOH HOH B . G 5 HOH 14 2014 2014 HOH HOH B . G 5 HOH 15 2015 2015 HOH HOH B . G 5 HOH 16 2016 2016 HOH HOH B . G 5 HOH 17 2017 2017 HOH HOH B . H 5 HOH 1 2001 2001 HOH HOH C . H 5 HOH 2 2002 2002 HOH HOH C . H 5 HOH 3 2003 2003 HOH HOH C . H 5 HOH 4 2004 2004 HOH HOH C . H 5 HOH 5 2005 2005 HOH HOH C . H 5 HOH 6 2006 2006 HOH HOH C . H 5 HOH 7 2007 2007 HOH HOH C . H 5 HOH 8 2008 2008 HOH HOH C . H 5 HOH 9 2009 2009 HOH HOH C . H 5 HOH 10 2010 2010 HOH HOH C . I 5 HOH 1 2001 2001 HOH HOH D . I 5 HOH 2 2002 2002 HOH HOH D . I 5 HOH 3 2003 2003 HOH HOH D . I 5 HOH 4 2004 2004 HOH HOH D . I 5 HOH 5 2005 2005 HOH HOH D . I 5 HOH 6 2006 2006 HOH HOH D . I 5 HOH 7 2007 2007 HOH HOH D . I 5 HOH 8 2008 2008 HOH HOH D . I 5 HOH 9 2009 2009 HOH HOH D . I 5 HOH 10 2010 2010 HOH HOH D . I 5 HOH 11 2011 2011 HOH HOH D . I 5 HOH 12 2012 2012 HOH HOH D . I 5 HOH 13 2013 2013 HOH HOH D . I 5 HOH 14 2014 2014 HOH HOH D . I 5 HOH 15 2015 2015 HOH HOH D . I 5 HOH 16 2016 2016 HOH HOH D . I 5 HOH 17 2017 2017 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7250 ? 1 MORE -64.8 ? 1 'SSA (A^2)' 19820 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-08 2 'Structure model' 1 1 2014-02-26 3 'Structure model' 1 2 2014-03-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Database references' # _software.name REFMAC _software.classification refinement _software.version 5.5.0044 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N6 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 DA _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N3 _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 DT _pdbx_validate_close_contact.auth_seq_id_2 19 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.07 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O2 C DT 0 ? ? 1_555 O2 C DT 0 ? ? 2_555 1.11 2 1 C2 C DT 0 ? ? 1_555 O2 C DT 0 ? ? 2_555 1.68 3 1 C2 C DT 0 ? ? 1_555 C2 C DT 0 ? ? 2_555 2.11 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 10 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 10 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.380 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.039 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DT 0 ? ? "C4'" C DT 0 ? ? "C3'" C DT 0 ? ? 101.03 104.50 -3.47 0.40 N 2 1 C6 C DT 0 ? ? N1 C DT 0 ? ? C2 C DT 0 ? ? 117.60 121.30 -3.70 0.50 N 3 1 N1 C DT 0 ? ? C2 C DT 0 ? ? O2 C DT 0 ? ? 131.03 123.10 7.93 0.80 N 4 1 N3 C DT 0 ? ? C2 C DT 0 ? ? O2 C DT 0 ? ? 113.65 122.30 -8.65 0.60 N 5 1 "C3'" C DT 0 ? ? "O3'" C DT 0 ? ? P C DA 1 ? ? 127.66 119.70 7.96 1.20 Y 6 1 "O4'" C DA 1 ? ? "C4'" C DA 1 ? ? "C3'" C DA 1 ? ? 98.18 104.50 -6.32 0.40 N 7 1 "C1'" C DA 1 ? ? "O4'" C DA 1 ? ? "C4'" C DA 1 ? ? 103.06 110.10 -7.04 1.00 N 8 1 "O4'" C DA 1 ? ? "C1'" C DA 1 ? ? N9 C DA 1 ? ? 116.66 108.30 8.36 0.30 N 9 1 "O4'" C DC 10 ? ? "C1'" C DC 10 ? ? N1 C DC 10 ? ? 110.25 108.30 1.95 0.30 N 10 1 "O4'" C DT 11 ? ? "C1'" C DT 11 ? ? N1 C DT 11 ? ? 110.58 108.30 2.28 0.30 N 11 1 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 111.74 108.30 3.44 0.30 N 12 1 "C1'" C DA 16 ? ? "O4'" C DA 16 ? ? "C4'" C DA 16 ? ? 102.01 110.10 -8.09 1.00 N 13 1 "O4'" C DA 16 ? ? "C1'" C DA 16 ? ? N9 C DA 16 ? ? 113.42 108.30 5.12 0.30 N 14 1 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 110.49 108.30 2.19 0.30 N 15 1 "O4'" D DG 14 ? ? "C1'" D DG 14 ? ? N9 D DG 14 ? ? 111.34 108.30 3.04 0.30 N 16 1 "O4'" D DA 17 ? ? "C1'" D DA 17 ? ? N9 D DA 17 ? ? 110.23 108.30 1.93 0.30 N 17 1 "O4'" D DT 18 ? ? "C1'" D DT 18 ? ? N1 D DT 18 ? ? 111.64 108.30 3.34 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 215 ? CG ? A GLN 6 CG 2 1 Y 1 A GLN 215 ? CD ? A GLN 6 CD 3 1 Y 1 A GLN 215 ? OE1 ? A GLN 6 OE1 4 1 Y 1 A GLN 215 ? NE2 ? A GLN 6 NE2 5 1 Y 1 A GLU 223 ? CG ? A GLU 14 CG 6 1 Y 1 A GLU 223 ? CD ? A GLU 14 CD 7 1 Y 1 A GLU 223 ? OE1 ? A GLU 14 OE1 8 1 Y 1 A GLU 223 ? OE2 ? A GLU 14 OE2 9 1 Y 1 A GLU 235 ? CG ? A GLU 26 CG 10 1 Y 1 A GLU 235 ? CD ? A GLU 26 CD 11 1 Y 1 A GLU 235 ? OE1 ? A GLU 26 OE1 12 1 Y 1 A GLU 235 ? OE2 ? A GLU 26 OE2 13 1 Y 1 B PHE 211 ? CG ? B PHE 2 CG 14 1 Y 1 B PHE 211 ? CD1 ? B PHE 2 CD1 15 1 Y 1 B PHE 211 ? CD2 ? B PHE 2 CD2 16 1 Y 1 B PHE 211 ? CE1 ? B PHE 2 CE1 17 1 Y 1 B PHE 211 ? CE2 ? B PHE 2 CE2 18 1 Y 1 B PHE 211 ? CZ ? B PHE 2 CZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 210 ? A MET 1 2 1 Y 1 A PHE 211 ? A PHE 2 3 1 Y 1 A ARG 306 ? A ARG 97 4 1 Y 1 D DT 0 ? D DT 1 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2WTY 'double helix' 2WTY 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 2 1_555 D DT 20 1_555 -0.003 -1.377 0.719 -15.121 24.501 113.790 1 C_DA1:DT19_D C 1 ? D 19 ? ? 1 1 C DA 3 1_555 D DT 19 1_555 0.965 -0.143 -0.115 -2.652 -12.195 -1.129 2 C_DA2:DT18_D C 2 ? D 18 ? 20 1 1 C DT 4 1_555 D DA 18 1_555 -0.009 -0.013 0.082 -5.861 -20.984 1.807 3 C_DT3:DA17_D C 3 ? D 17 ? 20 1 1 C DT 5 1_555 D DA 17 1_555 -0.507 -0.130 0.377 -10.733 -14.891 1.886 4 C_DT4:DA16_D C 4 ? D 16 ? 20 1 1 C DG 6 1_555 D DC 16 1_555 -0.368 -0.213 0.224 -1.374 -12.644 -4.034 5 C_DG5:DC15_D C 5 ? D 15 ? 19 1 1 C DC 7 1_555 D DG 15 1_555 0.011 0.058 0.438 -9.151 -4.524 1.030 6 C_DC6:DG14_D C 6 ? D 14 ? 19 1 1 C DT 8 1_555 D DA 14 1_555 0.469 -0.142 -0.018 4.907 -8.216 3.020 7 C_DT7:DA13_D C 7 ? D 13 ? 20 1 1 C DG 9 1_555 D DC 13 1_555 -0.436 -0.043 -0.291 1.654 -10.295 -2.870 8 C_DG8:DC12_D C 8 ? D 12 ? 19 1 1 C DA 10 1_555 D DT 12 1_555 -0.100 -0.133 -0.003 -1.703 -16.640 1.653 9 C_DA9:DT11_D C 9 ? D 11 ? 20 1 1 C DC 11 1_555 D DG 11 1_555 -0.964 -0.050 0.335 4.265 -14.881 8.489 10 C_DC10:DG10_D C 10 ? D 10 ? 19 1 1 C DT 12 1_555 D DA 10 1_555 0.052 0.021 0.010 -0.192 -13.719 0.436 11 C_DT11:DA9_D C 11 ? D 9 ? 20 1 1 C DC 13 1_555 D DG 9 1_555 0.037 -0.082 -0.233 -3.050 -10.469 -1.488 12 C_DC12:DG8_D C 12 ? D 8 ? 19 1 1 C DA 14 1_555 D DT 8 1_555 -0.291 -0.346 0.054 -3.426 -7.905 -0.698 13 C_DA13:DT7_D C 13 ? D 7 ? 20 1 1 C DG 15 1_555 D DC 7 1_555 0.100 -0.460 0.317 8.853 -10.937 -6.356 14 C_DG14:DC6_D C 14 ? D 6 ? 19 1 1 C DC 16 1_555 D DG 6 1_555 0.396 -0.427 0.383 4.460 -15.178 3.170 15 C_DC15:DG5_D C 15 ? D 5 ? 19 1 1 C DA 17 1_555 D DT 5 1_555 -0.816 -1.003 0.465 11.695 -18.265 -12.501 16 C_DA16:DT4_D C 16 ? D 4 ? 20 1 1 C DA 18 1_555 D DT 4 1_555 0.452 0.176 0.040 -1.882 -16.279 13.012 17 C_DA17:DT3_D C 17 ? D 3 ? 20 1 1 C DA 19 1_555 D DT 3 1_555 1.464 -0.008 0.130 -16.359 -23.479 6.276 18 C_DA18:DT2_D C 18 ? D 2 ? 20 1 1 C DT 20 1_555 D DA 2 1_555 0.494 -0.388 0.405 -15.694 -19.398 -4.071 19 C_DT19:DA1_D C 19 ? D 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 2 1_555 D DT 20 1_555 C DA 3 1_555 D DT 19 1_555 1.242 3.103 0.122 -116.931 136.434 -61.960 -1.306 0.831 -1.264 -68.275 -58.515 -179.731 1 CC_DA1DA2:DT18DT19_DD C 1 ? D 19 ? C 2 ? D 18 ? 1 C DA 3 1_555 D DT 19 1_555 C DT 4 1_555 D DA 18 1_555 -0.434 -1.121 3.353 -1.132 -3.222 28.817 -1.494 0.606 3.470 -6.446 2.264 29.014 2 CC_DA2DT3:DA17DT18_DD C 2 ? D 18 ? C 3 ? D 17 ? 1 C DT 4 1_555 D DA 18 1_555 C DT 5 1_555 D DA 17 1_555 -0.134 -0.412 3.342 -3.235 -0.939 34.416 -0.544 -0.287 3.350 -1.582 5.450 34.576 3 CC_DT3DT4:DA16DA17_DD C 3 ? D 17 ? C 4 ? D 16 ? 1 C DT 5 1_555 D DA 17 1_555 C DG 6 1_555 D DC 16 1_555 -0.199 0.201 3.153 -2.551 9.333 32.216 -1.144 -0.064 3.096 16.363 4.473 33.600 4 CC_DT4DG5:DC15DA16_DD C 4 ? D 16 ? C 5 ? D 15 ? 1 C DG 6 1_555 D DC 16 1_555 C DC 7 1_555 D DG 15 1_555 0.574 -0.452 3.487 -0.175 0.482 37.314 -0.774 -0.922 3.478 0.754 0.274 37.317 5 CC_DG5DC6:DG14DC15_DD C 5 ? D 15 ? C 6 ? D 14 ? 1 C DC 7 1_555 D DG 15 1_555 C DT 8 1_555 D DA 14 1_555 -0.060 0.219 2.938 4.177 7.983 28.802 -1.055 0.889 2.858 15.574 -8.148 30.150 6 CC_DC6DT7:DA13DG14_DD C 6 ? D 14 ? C 7 ? D 13 ? 1 C DT 8 1_555 D DA 14 1_555 C DG 9 1_555 D DC 13 1_555 -0.765 0.784 3.353 -0.659 7.338 36.200 0.195 1.114 3.454 11.661 1.048 36.917 7 CC_DT7DG8:DC12DA13_DD C 7 ? D 13 ? C 8 ? D 12 ? 1 C DG 9 1_555 D DC 13 1_555 C DA 10 1_555 D DT 12 1_555 0.266 -0.373 3.392 -3.203 6.744 31.627 -1.875 -1.049 3.205 12.163 5.777 32.475 8 CC_DG8DA9:DT11DC12_DD C 8 ? D 12 ? C 9 ? D 11 ? 1 C DA 10 1_555 D DT 12 1_555 C DC 11 1_555 D DG 11 1_555 0.353 -0.757 3.066 -3.519 2.493 29.631 -1.941 -1.354 2.933 4.842 6.835 29.936 9 CC_DA9DC10:DG10DT11_DD C 9 ? D 11 ? C 10 ? D 10 ? 1 C DC 11 1_555 D DG 11 1_555 C DT 12 1_555 D DA 10 1_555 -0.302 -0.155 3.384 2.863 2.959 41.378 -0.541 0.737 3.338 4.174 -4.039 41.574 10 CC_DC10DT11:DA9DG10_DD C 10 ? D 10 ? C 11 ? D 9 ? 1 C DT 12 1_555 D DA 10 1_555 C DC 13 1_555 D DG 9 1_555 0.116 -0.395 3.305 4.485 7.580 30.419 -2.125 0.617 3.104 14.080 -8.330 31.640 11 CC_DT11DC12:DG8DA9_DD C 11 ? D 9 ? C 12 ? D 8 ? 1 C DC 13 1_555 D DG 9 1_555 C DA 14 1_555 D DT 8 1_555 0.561 0.770 3.281 -0.024 8.097 39.073 0.169 -0.826 3.368 11.951 0.035 39.871 12 CC_DC12DA13:DT7DG8_DD C 12 ? D 8 ? C 13 ? D 7 ? 1 C DA 14 1_555 D DT 8 1_555 C DG 15 1_555 D DC 7 1_555 0.044 -0.094 3.087 -3.171 10.158 28.638 -2.079 -0.677 2.866 19.697 6.150 30.512 13 CC_DA13DG14:DC6DT7_DD C 13 ? D 7 ? C 14 ? D 6 ? 1 C DG 15 1_555 D DC 7 1_555 C DC 16 1_555 D DG 6 1_555 0.203 -0.552 3.390 -1.718 0.791 34.697 -1.050 -0.610 3.363 1.325 2.879 34.747 14 CC_DG14DC15:DG5DC6_DD C 14 ? D 6 ? C 15 ? D 5 ? 1 C DC 16 1_555 D DG 6 1_555 C DA 17 1_555 D DT 5 1_555 -0.253 -0.634 3.073 0.048 7.804 24.253 -3.477 0.587 2.737 17.989 -0.112 25.460 15 CC_DC15DA16:DT4DG5_DD C 15 ? D 5 ? C 16 ? D 4 ? 1 C DA 17 1_555 D DT 5 1_555 C DA 18 1_555 D DT 4 1_555 0.204 0.142 3.714 5.704 -1.005 48.974 0.255 0.241 3.710 -1.207 -6.852 49.295 16 CC_DA16DA17:DT3DT4_DD C 16 ? D 4 ? C 17 ? D 3 ? 1 C DA 18 1_555 D DT 4 1_555 C DA 19 1_555 D DT 3 1_555 -1.190 1.139 3.627 -4.727 -3.569 43.518 1.901 1.092 3.631 -4.787 6.340 43.900 17 CC_DA17DA18:DT2DT3_DD C 17 ? D 3 ? C 18 ? D 2 ? 1 C DA 19 1_555 D DT 3 1_555 C DT 20 1_555 D DA 2 1_555 -0.178 0.166 3.432 -7.452 -8.409 40.404 1.156 -0.570 3.315 -11.899 10.546 41.874 18 CC_DA18DT19:DA1DT2_DD C 18 ? D 2 ? C 19 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 water HOH #