HEADER TRANSFERASE 01-OCT-09 2WU9 TITLE CRYSTAL STRUCTURE OF PEROXISOMAL KAT2 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETOACYL-COA THIOLASE 2, PEROXISOMAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 36-462; COMPND 5 SYNONYM: BETA-KETOTHIOLASE 2, ACETYL-COA ACYLTRANSFERASE 2, COMPND 6 PEROXISOMAL 3-OXOACYL-COA THIOLASE 2, PEROXISOME DEFECTIVE PROTEIN COMPND 7 1\,3-KETOACYL-COA THIOLASE; COMPND 8 EC: 2.3.1.16; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 ATCC: 77500; SOURCE 6 ORGANELLE: PEROXISOME; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: PET46 EK/LIC; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: ROSETTAGAMI2(DE3) KEYWDS CYSTEINE OXIDATION, FATTY ACID METABOLISM, OXYLIPIN BIOSYNTHESIS, KEYWDS 2 PLANT LIPID METABOLISM, FATTY ACID BIOSYNTHESIS, ACYLTRANSFERASE, KEYWDS 3 LIPID METABOLISM, TRANSFERASE, BETA OXIDATION, LIPID SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR V.E.PYE,C.E.CHRISTENSEN,J.H.DYER,S.ARENT,A.HENRIKSEN REVDAT 7 20-DEC-23 2WU9 1 REMARK REVDAT 6 24-JUL-19 2WU9 1 REMARK REVDAT 5 08-MAY-19 2WU9 1 REMARK REVDAT 4 04-AUG-10 2WU9 1 JRNL REVDAT 3 09-JUN-10 2WU9 1 JRNL REVDAT 2 19-MAY-10 2WU9 1 SOURCE JRNL REVDAT 1 12-MAY-10 2WU9 0 JRNL AUTH V.E.PYE,C.E.CHRISTENSEN,J.H.DYER,S.ARENT,A.HENRIKSEN JRNL TITL PEROXISOMAL PLANT 3-KETOACYL-COA THIOLASES STRUCTURE AND JRNL TITL 2 ACTIVITY ARE REGULATED BY A SENSITIVE REDOX SWITCH JRNL REF J.BIOL.CHEM. V. 285 24078 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20463027 JRNL DOI 10.1074/JBC.M110.106013 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 108434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6110 - 4.6572 1.00 3716 219 0.1508 0.1546 REMARK 3 2 4.6572 - 3.6979 1.00 3703 192 0.1232 0.1440 REMARK 3 3 3.6979 - 3.2309 1.00 3681 175 0.1315 0.1555 REMARK 3 4 3.2309 - 2.9356 1.00 3638 201 0.1447 0.1849 REMARK 3 5 2.9356 - 2.7253 0.99 3630 199 0.1451 0.1722 REMARK 3 6 2.7253 - 2.5647 0.99 3634 191 0.1471 0.1698 REMARK 3 7 2.5647 - 2.4363 0.99 3624 189 0.1415 0.1847 REMARK 3 8 2.4363 - 2.3303 0.99 3653 174 0.1412 0.1699 REMARK 3 9 2.3303 - 2.2406 0.99 3616 186 0.1308 0.1611 REMARK 3 10 2.2406 - 2.1633 0.99 3595 196 0.1284 0.1758 REMARK 3 11 2.1633 - 2.0956 0.99 3620 183 0.1292 0.1569 REMARK 3 12 2.0956 - 2.0357 0.99 3620 177 0.1324 0.1702 REMARK 3 13 2.0357 - 1.9821 0.98 3589 215 0.1338 0.1462 REMARK 3 14 1.9821 - 1.9338 0.98 3592 186 0.1283 0.1674 REMARK 3 15 1.9338 - 1.8898 0.97 3513 205 0.1384 0.1839 REMARK 3 16 1.8898 - 1.8496 0.97 3546 199 0.1448 0.1701 REMARK 3 17 1.8496 - 1.8126 0.97 3560 178 0.1428 0.1679 REMARK 3 18 1.8126 - 1.7784 0.97 3495 194 0.1436 0.1924 REMARK 3 19 1.7784 - 1.7467 0.95 3518 147 0.1491 0.1808 REMARK 3 20 1.7467 - 1.7171 0.96 3490 187 0.1562 0.1701 REMARK 3 21 1.7171 - 1.6894 0.95 3418 168 0.1502 0.1751 REMARK 3 22 1.6894 - 1.6634 0.95 3494 177 0.1503 0.1789 REMARK 3 23 1.6634 - 1.6389 0.94 3439 191 0.1566 0.2080 REMARK 3 24 1.6389 - 1.6158 0.95 3457 175 0.1678 0.1976 REMARK 3 25 1.6158 - 1.5940 0.93 3380 164 0.1767 0.2027 REMARK 3 26 1.5940 - 1.5733 0.88 3200 173 0.1873 0.2136 REMARK 3 27 1.5733 - 1.5536 0.82 2953 180 0.2002 0.2419 REMARK 3 28 1.5536 - 1.5349 0.75 2750 144 0.2073 0.2287 REMARK 3 29 1.5349 - 1.5170 0.69 2504 134 0.2139 0.2403 REMARK 3 30 1.5170 - 1.5000 0.64 2375 132 0.2094 0.2195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 40.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15490 REMARK 3 B22 (A**2) : -0.46260 REMARK 3 B33 (A**2) : -0.35380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.53090 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6296 REMARK 3 ANGLE : 1.088 8547 REMARK 3 CHIRALITY : 0.074 981 REMARK 3 PLANARITY : 0.005 1145 REMARK 3 DIHEDRAL : 14.108 2337 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 34.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WUA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP. AT-KAT2 AT 11.8 MG/ML IN REMARK 280 20MM TRIS(HCL) PH9.0, 150MM NACL, 2MM EDTA, 5% (V/V) GLYCEROL, REMARK 280 2MM DTT, 2MM C12-COA AGAINST A WELL SOLUTION CONTAINING 20% (W/V) REMARK 280 PEG 3350, 0.2M LI(CH3COO)2, 0.002% ETHYLENE GLYCOL., VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.33500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 VAL A 29 REMARK 465 ASP A 30 REMARK 465 ASP A 31 REMARK 465 ASP A 32 REMARK 465 ASP A 33 REMARK 465 LYS A 34 REMARK 465 MET A 35 REMARK 465 ALA A 36 REMARK 465 GLY A 37 REMARK 465 ASP A 38 REMARK 465 SER A 39 REMARK 465 ALA A 40 REMARK 465 ALA A 41 REMARK 465 TYR A 42 REMARK 465 GLN A 43 REMARK 465 ARG A 44 REMARK 465 THR A 45 REMARK 465 ARG A 449 REMARK 465 LYS A 450 REMARK 465 VAL A 451 REMARK 465 GLU A 452 REMARK 465 ALA A 453 REMARK 465 GLN A 454 REMARK 465 GLY A 455 REMARK 465 LEU A 456 REMARK 465 LEU A 457 REMARK 465 SER A 458 REMARK 465 LYS A 459 REMARK 465 ASP A 460 REMARK 465 ALA A 461 REMARK 465 ARG A 462 REMARK 465 MET B 21 REMARK 465 ALA B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 HIS B 27 REMARK 465 HIS B 28 REMARK 465 VAL B 29 REMARK 465 ASP B 30 REMARK 465 ASP B 31 REMARK 465 ASP B 32 REMARK 465 ASP B 33 REMARK 465 LYS B 34 REMARK 465 MET B 35 REMARK 465 ALA B 36 REMARK 465 GLY B 37 REMARK 465 ASP B 38 REMARK 465 SER B 39 REMARK 465 ALA B 40 REMARK 465 ALA B 41 REMARK 465 TYR B 42 REMARK 465 GLN B 43 REMARK 465 ARG B 44 REMARK 465 THR B 45 REMARK 465 SER B 46 REMARK 465 ARG B 449 REMARK 465 LYS B 450 REMARK 465 VAL B 451 REMARK 465 GLU B 452 REMARK 465 ALA B 453 REMARK 465 GLN B 454 REMARK 465 GLY B 455 REMARK 465 LEU B 456 REMARK 465 LEU B 457 REMARK 465 SER B 458 REMARK 465 LYS B 459 REMARK 465 ASP B 460 REMARK 465 ALA B 461 REMARK 465 ARG B 462 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 66 -41.16 75.51 REMARK 500 GLN A 137 -128.77 48.80 REMARK 500 GLN A 137 -130.64 48.80 REMARK 500 THR A 243 -156.17 -142.64 REMARK 500 THR A 243 -156.17 -148.61 REMARK 500 LYS B 66 -39.90 70.29 REMARK 500 LYS B 66 -39.90 74.92 REMARK 500 GLN B 137 -129.53 46.97 REMARK 500 GLN B 137 -130.58 46.97 REMARK 500 ARG B 321 -63.04 -109.70 REMARK 500 THR B 428 -0.90 78.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2055 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A2057 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A2059 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2076 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2098 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A2099 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2108 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2116 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2118 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A2126 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A2127 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2128 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2081 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B2105 DISTANCE = 5.87 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1451 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C7Z RELATED DB: PDB REMARK 900 PLANT ENZYME CRYSTAL FORM II REMARK 900 RELATED ID: 2C7Y RELATED DB: PDB REMARK 900 PLANT ENZYME REMARK 900 RELATED ID: 2WUA RELATED DB: PDB REMARK 900 STRUCTURE OF THE PEROXISOMAL 3-KETOACYL-COA THIOLASE FROM SUNFLOWER DBREF 2WU9 A 36 462 UNP Q56WD9 THIK2_ARATH 36 462 DBREF 2WU9 B 36 462 UNP Q56WD9 THIK2_ARATH 36 462 SEQADV 2WU9 MET A 21 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ALA A 22 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS A 23 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS A 24 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS A 25 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS A 26 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS A 27 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS A 28 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 VAL A 29 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ASP A 30 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ASP A 31 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ASP A 32 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ASP A 33 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 LYS A 34 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 MET A 35 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 MET B 21 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ALA B 22 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS B 23 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS B 24 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS B 25 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS B 26 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS B 27 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 HIS B 28 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 VAL B 29 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ASP B 30 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ASP B 31 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ASP B 32 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 ASP B 33 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 LYS B 34 UNP Q56WD9 EXPRESSION TAG SEQADV 2WU9 MET B 35 UNP Q56WD9 EXPRESSION TAG SEQRES 1 A 442 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 442 LYS MET ALA GLY ASP SER ALA ALA TYR GLN ARG THR SER SEQRES 3 A 442 LEU TYR GLY ASP ASP VAL VAL ILE VAL ALA ALA HIS ARG SEQRES 4 A 442 THR PRO LEU CYS LYS SER LYS ARG GLY ASN PHE LYS ASP SEQRES 5 A 442 THR TYR PRO ASP ASP LEU LEU ALA PRO VAL LEU ARG ALA SEQRES 6 A 442 LEU ILE GLU LYS THR ASN LEU ASN PRO SER GLU VAL GLY SEQRES 7 A 442 ASP ILE VAL VAL GLY THR VAL LEU ALA PRO GLY SER GLN SEQRES 8 A 442 ARG ALA SER GLU CYS ARG MET ALA ALA PHE TYR ALA GLY SEQRES 9 A 442 PHE PRO GLU THR VAL ALA VAL ARG THR VAL ASN ARG GLN SEQRES 10 A 442 CYS SER SER GLY LEU GLN ALA VAL ALA ASP VAL ALA ALA SEQRES 11 A 442 ALA ILE LYS ALA GLY PHE TYR ASP ILE GLY ILE GLY ALA SEQRES 12 A 442 GLY LEU GLU SER MET THR THR ASN PRO MET ALA TRP GLU SEQRES 13 A 442 GLY SER VAL ASN PRO ALA VAL LYS LYS PHE ALA GLN ALA SEQRES 14 A 442 GLN ASN CYS LEU LEU PRO MET GLY VAL THR SER GLU ASN SEQRES 15 A 442 VAL ALA GLN ARG PHE GLY VAL SER ARG GLN GLU GLN ASP SEQRES 16 A 442 GLN ALA ALA VAL ASP SER HIS ARG LYS ALA ALA ALA ALA SEQRES 17 A 442 THR ALA ALA GLY LYS PHE LYS ASP GLU ILE ILE PRO VAL SEQRES 18 A 442 LYS THR LYS LEU VAL ASP PRO LYS THR GLY ASP GLU LYS SEQRES 19 A 442 PRO ILE THR VAL SER VAL ASP ASP GLY ILE ARG PRO THR SEQRES 20 A 442 THR THR LEU ALA SER LEU GLY LYS LEU LYS PRO VAL PHE SEQRES 21 A 442 LYS LYS ASP GLY THR THR THR ALA GLY ASN SER SER GLN SEQRES 22 A 442 VAL SER ASP GLY ALA GLY ALA VAL LEU LEU MET LYS ARG SEQRES 23 A 442 SER VAL ALA MET GLN LYS GLY LEU PRO VAL LEU GLY VAL SEQRES 24 A 442 PHE ARG THR PHE ALA ALA VAL GLY VAL ASP PRO ALA ILE SEQRES 25 A 442 MET GLY ILE GLY PRO ALA VAL ALA ILE PRO ALA ALA VAL SEQRES 26 A 442 LYS ALA ALA GLY LEU GLU LEU ASP ASP ILE ASP LEU PHE SEQRES 27 A 442 GLU ILE ASN GLU ALA PHE ALA SER GLN PHE VAL TYR CYS SEQRES 28 A 442 ARG ASN LYS LEU GLY LEU ASP PRO GLU LYS ILE ASN VAL SEQRES 29 A 442 ASN GLY GLY ALA MET ALA ILE GLY HIS PRO LEU GLY ALA SEQRES 30 A 442 THR GLY ALA ARG CYS VAL ALA THR LEU LEU HIS GLU MET SEQRES 31 A 442 LYS ARG ARG GLY LYS ASP CYS ARG PHE GLY VAL VAL SER SEQRES 32 A 442 MET CYS ILE GLY THR GLY MET GLY ALA ALA ALA VAL PHE SEQRES 33 A 442 GLU ARG GLY ASP GLY VAL ASP GLU LEU ARG ASN ALA ARG SEQRES 34 A 442 LYS VAL GLU ALA GLN GLY LEU LEU SER LYS ASP ALA ARG SEQRES 1 B 442 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 442 LYS MET ALA GLY ASP SER ALA ALA TYR GLN ARG THR SER SEQRES 3 B 442 LEU TYR GLY ASP ASP VAL VAL ILE VAL ALA ALA HIS ARG SEQRES 4 B 442 THR PRO LEU CYS LYS SER LYS ARG GLY ASN PHE LYS ASP SEQRES 5 B 442 THR TYR PRO ASP ASP LEU LEU ALA PRO VAL LEU ARG ALA SEQRES 6 B 442 LEU ILE GLU LYS THR ASN LEU ASN PRO SER GLU VAL GLY SEQRES 7 B 442 ASP ILE VAL VAL GLY THR VAL LEU ALA PRO GLY SER GLN SEQRES 8 B 442 ARG ALA SER GLU CYS ARG MET ALA ALA PHE TYR ALA GLY SEQRES 9 B 442 PHE PRO GLU THR VAL ALA VAL ARG THR VAL ASN ARG GLN SEQRES 10 B 442 CYS SER SER GLY LEU GLN ALA VAL ALA ASP VAL ALA ALA SEQRES 11 B 442 ALA ILE LYS ALA GLY PHE TYR ASP ILE GLY ILE GLY ALA SEQRES 12 B 442 GLY LEU GLU SER MET THR THR ASN PRO MET ALA TRP GLU SEQRES 13 B 442 GLY SER VAL ASN PRO ALA VAL LYS LYS PHE ALA GLN ALA SEQRES 14 B 442 GLN ASN CYS LEU LEU PRO MET GLY VAL THR SER GLU ASN SEQRES 15 B 442 VAL ALA GLN ARG PHE GLY VAL SER ARG GLN GLU GLN ASP SEQRES 16 B 442 GLN ALA ALA VAL ASP SER HIS ARG LYS ALA ALA ALA ALA SEQRES 17 B 442 THR ALA ALA GLY LYS PHE LYS ASP GLU ILE ILE PRO VAL SEQRES 18 B 442 LYS THR LYS LEU VAL ASP PRO LYS THR GLY ASP GLU LYS SEQRES 19 B 442 PRO ILE THR VAL SER VAL ASP ASP GLY ILE ARG PRO THR SEQRES 20 B 442 THR THR LEU ALA SER LEU GLY LYS LEU LYS PRO VAL PHE SEQRES 21 B 442 LYS LYS ASP GLY THR THR THR ALA GLY ASN SER SER GLN SEQRES 22 B 442 VAL SER ASP GLY ALA GLY ALA VAL LEU LEU MET LYS ARG SEQRES 23 B 442 SER VAL ALA MET GLN LYS GLY LEU PRO VAL LEU GLY VAL SEQRES 24 B 442 PHE ARG THR PHE ALA ALA VAL GLY VAL ASP PRO ALA ILE SEQRES 25 B 442 MET GLY ILE GLY PRO ALA VAL ALA ILE PRO ALA ALA VAL SEQRES 26 B 442 LYS ALA ALA GLY LEU GLU LEU ASP ASP ILE ASP LEU PHE SEQRES 27 B 442 GLU ILE ASN GLU ALA PHE ALA SER GLN PHE VAL TYR CYS SEQRES 28 B 442 ARG ASN LYS LEU GLY LEU ASP PRO GLU LYS ILE ASN VAL SEQRES 29 B 442 ASN GLY GLY ALA MET ALA ILE GLY HIS PRO LEU GLY ALA SEQRES 30 B 442 THR GLY ALA ARG CYS VAL ALA THR LEU LEU HIS GLU MET SEQRES 31 B 442 LYS ARG ARG GLY LYS ASP CYS ARG PHE GLY VAL VAL SER SEQRES 32 B 442 MET CYS ILE GLY THR GLY MET GLY ALA ALA ALA VAL PHE SEQRES 33 B 442 GLU ARG GLY ASP GLY VAL ASP GLU LEU ARG ASN ALA ARG SEQRES 34 B 442 LYS VAL GLU ALA GLN GLY LEU LEU SER LYS ASP ALA ARG HET EDO A1449 4 HET EDO A1450 4 HET EDO A1451 4 HET EDO A1452 4 HET EDO A1453 4 HET EDO A1454 4 HET EDO B1449 4 HET EDO B1450 4 HET EDO B1451 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 HOH *1131(H2 O) HELIX 1 1 LEU A 47 ASP A 50 5 4 HELIX 2 2 TYR A 74 ASN A 91 1 18 HELIX 3 3 ASN A 93 VAL A 97 5 5 HELIX 4 4 PRO A 108 ALA A 123 1 16 HELIX 5 5 ARG A 136 CYS A 138 5 3 HELIX 6 6 SER A 139 ALA A 154 1 16 HELIX 7 7 ASN A 180 LYS A 185 5 6 HELIX 8 8 PHE A 186 CYS A 192 1 7 HELIX 9 9 PRO A 195 GLY A 208 1 14 HELIX 10 10 SER A 210 ALA A 231 1 22 HELIX 11 11 THR A 269 LYS A 275 1 7 HELIX 12 12 THR A 287 ASN A 290 5 4 HELIX 13 13 ARG A 306 GLY A 313 1 8 HELIX 14 14 ASP A 329 GLY A 334 5 6 HELIX 15 15 ILE A 335 ALA A 348 1 14 HELIX 16 16 GLU A 351 ILE A 355 5 5 HELIX 17 17 PHE A 364 GLY A 376 1 13 HELIX 18 18 ASP A 378 LYS A 381 5 4 HELIX 19 19 GLY A 387 GLY A 392 1 6 HELIX 20 20 GLY A 396 GLY A 414 1 19 HELIX 21 21 ASP A 440 ASN A 447 1 8 HELIX 22 22 PRO B 75 ASN B 91 1 17 HELIX 23 23 ASN B 93 VAL B 97 5 5 HELIX 24 24 PRO B 108 ALA B 123 1 16 HELIX 25 25 ARG B 136 CYS B 138 5 3 HELIX 26 26 SER B 139 ALA B 154 1 16 HELIX 27 27 ASN B 180 LYS B 185 5 6 HELIX 28 28 PHE B 186 CYS B 192 1 7 HELIX 29 29 PRO B 195 GLY B 208 1 14 HELIX 30 30 SER B 210 ALA B 231 1 22 HELIX 31 31 THR B 269 LYS B 275 1 7 HELIX 32 32 THR B 287 ASN B 290 5 4 HELIX 33 33 ARG B 306 GLY B 313 1 8 HELIX 34 34 ASP B 329 GLY B 334 5 6 HELIX 35 35 ILE B 335 ALA B 348 1 14 HELIX 36 36 GLU B 351 ILE B 355 5 5 HELIX 37 37 PHE B 364 LEU B 375 1 12 HELIX 38 38 ASP B 378 LYS B 381 5 4 HELIX 39 39 GLY B 387 GLY B 392 1 6 HELIX 40 40 GLY B 396 GLY B 414 1 19 HELIX 41 41 VAL B 442 LEU B 445 5 4 SHEET 1 AA 7 CYS A 63 LYS A 64 0 SHEET 2 AA 7 SER A 295 LYS A 305 -1 O ASP A 296 N CYS A 63 SHEET 3 AA 7 VAL A 52 ARG A 59 -1 O VAL A 53 N MET A 304 SHEET 4 AA 7 GLY A 318 GLY A 327 -1 O GLY A 318 N ILE A 54 SHEET 5 AA 7 MET A 430 ARG A 438 -1 O GLY A 431 N VAL A 326 SHEET 6 AA 7 PHE A 419 ILE A 426 -1 O GLY A 420 N PHE A 436 SHEET 7 AA 7 LEU A 357 ILE A 360 1 O LEU A 357 N VAL A 421 SHEET 1 AB 2 CYS A 63 LYS A 64 0 SHEET 2 AB 2 SER A 295 LYS A 305 -1 O ASP A 296 N CYS A 63 SHEET 1 AC 2 VAL A 241 VAL A 246 0 SHEET 2 AC 2 GLU A 253 VAL A 258 -1 O LYS A 254 N LEU A 245 SHEET 1 BA 2 VAL B 241 VAL B 246 0 SHEET 2 BA 2 GLU B 253 VAL B 258 -1 O LYS B 254 N LEU B 245 SITE 1 AC1 3 ASP A 50 HOH A2595 HOH A2596 SITE 1 AC2 9 PRO A 75 ALA A 107 PRO A 108 GLN A 111 SITE 2 AC2 9 ARG A 112 GLU A 115 THR A 170 ASN A 171 SITE 3 AC2 9 HOH A2597 SITE 1 AC3 4 GLY A 155 ASP A 158 HOH A2255 HOH A2454 SITE 1 AC4 7 ALA A 217 SER A 221 LYS A 224 GLU A 362 SITE 2 AC4 7 PHE A 368 HOH A2527 HOH A2599 SITE 1 AC5 8 CYS A 192 LEU A 194 MET A 196 THR A 199 SITE 2 AC5 8 PRO A 330 MET A 333 THR A 428 HOH A2600 SITE 1 AC6 6 GLN A 216 VAL A 219 LEU A 270 HOH A2358 SITE 2 AC6 6 HOH A2601 HOH B2531 SITE 1 AC7 8 ALA B 217 ASP B 220 SER B 221 LYS B 224 SITE 2 AC7 8 GLU B 362 PHE B 368 HOH B2297 HOH B2532 SITE 1 AC8 8 LEU B 47 ARG B 306 VAL B 316 VAL B 319 SITE 2 AC8 8 ARG B 321 GLY B 439 ASP B 440 GLU B 444 SITE 1 AC9 6 PHE A 156 THR B 322 PHE B 323 ALA B 347 SITE 2 AC9 6 HOH B2424 HOH B2533 CRYST1 60.831 86.670 72.750 90.00 106.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016439 0.000000 0.004935 0.00000 SCALE2 0.000000 0.011538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014352 0.00000 MTRIX1 1 -0.097770 0.961200 -0.257900 -3.19100 1 MTRIX2 1 0.962300 0.025240 -0.270700 18.40000 1 MTRIX3 1 -0.253700 -0.274700 -0.927000 58.38000 1