HEADER HYDROLASE 02-OCT-09 2WUF TITLE CRYSTAL STRUCTURE OF S114A MUTANT OF HSAD FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS IN COMPLEX WITH 4,9DSHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE BPHD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSAD, 2-HYDROXY-6-PHENYLHEXA-2\,4-DIENOIC ACID HYDROLASE; COMPND 5 EC: 3.7.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5[ALPHA]; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.A.LACK,K.C.YAM,E.D.LOWE,G.P.HORSMAN,R.OWEN,E.SIM,L.D.ELTIS REVDAT 6 20-DEC-23 2WUF 1 REMARK REVDAT 5 19-DEC-18 2WUF 1 JRNL REMARK LINK REVDAT 4 02-FEB-10 2WUF 1 REMARK REVDAT 3 12-JAN-10 2WUF 1 JRNL REVDAT 2 10-NOV-09 2WUF 1 JRNL REVDAT 1 20-OCT-09 2WUF 0 JRNL AUTH N.A.LACK,K.C.YAM,E.D.LOWE,G.P.HORSMAN,R.L.OWEN,E.SIM, JRNL AUTH 2 L.D.ELTIS JRNL TITL CHARACTERIZATION OF A CARBON-CARBON HYDROLASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS INVOLVED IN CHOLESTEROL JRNL TITL 3 METABOLISM. JRNL REF J. BIOL. CHEM. V. 285 434 2010 JRNL REFN ESSN 1083-351X JRNL PMID 19875455 JRNL DOI 10.1074/JBC.M109.058081 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 42140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5992 - 4.7853 0.93 2692 168 0.2192 0.2184 REMARK 3 2 4.7853 - 3.7992 0.94 2660 146 0.1575 0.1712 REMARK 3 3 3.7992 - 3.3192 0.97 2737 147 0.1749 0.1931 REMARK 3 4 3.3192 - 3.0158 0.97 2699 149 0.2120 0.2285 REMARK 3 5 3.0158 - 2.7997 0.97 2702 158 0.2154 0.2273 REMARK 3 6 2.7997 - 2.6347 0.97 2723 133 0.2192 0.2544 REMARK 3 7 2.6347 - 2.5027 0.97 2716 134 0.2156 0.3049 REMARK 3 8 2.5027 - 2.3938 0.97 2672 143 0.1967 0.2388 REMARK 3 9 2.3938 - 2.3017 0.96 2651 160 0.1967 0.2554 REMARK 3 10 2.3017 - 2.2223 0.96 2676 128 0.1989 0.2410 REMARK 3 11 2.2223 - 2.1528 0.95 2614 129 0.2132 0.2788 REMARK 3 12 2.1528 - 2.0912 0.95 2618 152 0.2103 0.2453 REMARK 3 13 2.0912 - 2.0362 0.92 2523 140 0.2189 0.2566 REMARK 3 14 2.0362 - 1.9865 0.91 2561 137 0.2244 0.2646 REMARK 3 15 1.9865 - 1.9414 0.89 2482 110 0.2445 0.3156 REMARK 3 16 1.9414 - 1.9000 0.88 2414 118 0.2530 0.3337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 75.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 NULL REMARK 3 ANGLE : 0.820 NULL REMARK 3 CHIRALITY : 0.071 NULL REMARK 3 PLANARITY : 0.004 NULL REMARK 3 DIHEDRAL : 11.160 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6530 -16.5513 29.0404 REMARK 3 T TENSOR REMARK 3 T11: 0.1679 T22: 0.1907 REMARK 3 T33: 0.1281 T12: 0.0084 REMARK 3 T13: 0.0290 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.7863 L22: 0.2269 REMARK 3 L33: 0.1460 L12: 0.2254 REMARK 3 L13: -0.1083 L23: -0.2139 REMARK 3 S TENSOR REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1530 -44.7212 16.1311 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1011 REMARK 3 T33: 0.1811 T12: -0.0602 REMARK 3 T13: -0.0615 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.1360 L22: 0.4706 REMARK 3 L33: 0.4976 L12: -0.1208 REMARK 3 L13: -0.1860 L23: -0.0560 REMARK 3 S TENSOR REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 7:209 OR RESSEQ REMARK 3 213:288 )) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 7:209 OR RESSEQ REMARK 3 213:288 )) REMARK 3 ATOM PAIRS NUMBER : 2257 REMARK 3 RMSD : 0.618 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97570 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : KIRKPATRICK BAEZ BIMORPH MIRROR REMARK 200 PAIR FOR HORIZONTAL AND VERTICAL REMARK 200 FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2WUD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM KSCN, 24% PEG 3350, 100MM BIS REMARK 280 -TRIS PROPANE PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.98550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.44650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.98550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.44650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.98550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.44650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.98550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.44650 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.94150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 90.44650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 55.94150 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 90.44650 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 55.94150 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 90.44650 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 55.94150 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.44650 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 55.94150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.98550 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 55.94150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 58.98550 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 55.94150 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 58.98550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 55.94150 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 58.98550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -55.94150 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 90.44650 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -117.97100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 114 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 114 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 289 REMARK 465 GLY A 290 REMARK 465 ARG A 291 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 289 REMARK 465 GLY B 290 REMARK 465 ARG B 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 157 O HOH B 2048 1.97 REMARK 500 O1 GOL A 1289 O HOH A 2089 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ ARG B 130 C SCN A 1290 13545 0.50 REMARK 500 NH2 ARG B 130 S SCN A 1290 13545 0.77 REMARK 500 NH1 ARG B 130 N SCN A 1290 13545 0.93 REMARK 500 NH1 ARG B 130 C SCN A 1290 13545 1.08 REMARK 500 CZ ARG B 130 N SCN A 1290 13545 1.16 REMARK 500 NH2 ARG B 130 C SCN A 1290 13545 1.27 REMARK 500 NE ARG B 130 N SCN A 1290 13545 1.56 REMARK 500 NE ARG B 130 C SCN A 1290 13545 1.80 REMARK 500 CZ ARG B 130 S SCN A 1290 13545 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 153 CD GLU B 153 OE2 -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 133 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 114 -125.47 52.38 REMARK 500 VAL A 243 -60.25 -100.72 REMARK 500 ASN B 58 -43.88 -130.93 REMARK 500 ASN B 58 -43.88 -135.26 REMARK 500 ALA B 114 -126.05 60.77 REMARK 500 ASP B 216 40.64 -97.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2009 DISTANCE = 7.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KEM B 1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 1290 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WUD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S114A MUTANT OF HSAD FROM MYCOBACTERIUM REMARK 900 TUBERCULOSIS REMARK 900 RELATED ID: 2VF2 RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF HSAD FROM MYCOBACTERIUM TUBERCULOSIS REMARK 900 RELATED ID: 2WUE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S114A MUTANT OF HSAD FROM MYCOBACTERIUM REMARK 900 TUBERCULOSIS IN COMPLEX WITH HOPODA REMARK 900 RELATED ID: 2WUG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S114A MUTANT OF HSAD FROM MYCOBACTERIUM REMARK 900 TUBERCULOSIS IN COMPLEX WITH HOPDA REMARK 999 REMARK 999 SEQUENCE REMARK 999 S114A MUTANT DBREF 2WUF A 1 291 UNP P96851 P96851_MYCTU 1 291 DBREF 2WUF B 1 291 UNP P96851 P96851_MYCTU 1 291 SEQADV 2WUF ALA A 114 UNP P96851 SER 114 ENGINEERED MUTATION SEQADV 2WUF ALA B 114 UNP P96851 SER 114 ENGINEERED MUTATION SEQRES 1 A 291 MET THR ALA THR GLU GLU LEU THR PHE GLU SER THR SER SEQRES 2 A 291 ARG PHE ALA GLU VAL ASP VAL ASP GLY PRO LEU LYS LEU SEQRES 3 A 291 HIS TYR HIS GLU ALA GLY VAL GLY ASN ASP GLN THR VAL SEQRES 4 A 291 VAL LEU LEU HIS GLY GLY GLY PRO GLY ALA ALA SER TRP SEQRES 5 A 291 THR ASN PHE SER ARG ASN ILE ALA VAL LEU ALA ARG HIS SEQRES 6 A 291 PHE HIS VAL LEU ALA VAL ASP GLN PRO GLY TYR GLY HIS SEQRES 7 A 291 SER ASP LYS ARG ALA GLU HIS GLY GLN PHE ASN ARG TYR SEQRES 8 A 291 ALA ALA MET ALA LEU LYS GLY LEU PHE ASP GLN LEU GLY SEQRES 9 A 291 LEU GLY ARG VAL PRO LEU VAL GLY ASN ALA LEU GLY GLY SEQRES 10 A 291 GLY THR ALA VAL ARG PHE ALA LEU ASP TYR PRO ALA ARG SEQRES 11 A 291 ALA GLY ARG LEU VAL LEU MET GLY PRO GLY GLY LEU SER SEQRES 12 A 291 ILE ASN LEU PHE ALA PRO ASP PRO THR GLU GLY VAL LYS SEQRES 13 A 291 ARG LEU SER LYS PHE SER VAL ALA PRO THR ARG GLU ASN SEQRES 14 A 291 LEU GLU ALA PHE LEU ARG VAL MET VAL TYR ASP LYS ASN SEQRES 15 A 291 LEU ILE THR PRO GLU LEU VAL ASP GLN ARG PHE ALA LEU SEQRES 16 A 291 ALA SER THR PRO GLU SER LEU THR ALA THR ARG ALA MET SEQRES 17 A 291 GLY LYS SER PHE ALA GLY ALA ASP PHE GLU ALA GLY MET SEQRES 18 A 291 MET TRP ARG GLU VAL TYR ARG LEU ARG GLN PRO VAL LEU SEQRES 19 A 291 LEU ILE TRP GLY ARG GLU ASP ARG VAL ASN PRO LEU ASP SEQRES 20 A 291 GLY ALA LEU VAL ALA LEU LYS THR ILE PRO ARG ALA GLN SEQRES 21 A 291 LEU HIS VAL PHE GLY GLN CYS GLY HIS TRP VAL GLN VAL SEQRES 22 A 291 GLU LYS PHE ASP GLU PHE ASN LYS LEU THR ILE GLU PHE SEQRES 23 A 291 LEU GLY GLY GLY ARG SEQRES 1 B 291 MET THR ALA THR GLU GLU LEU THR PHE GLU SER THR SER SEQRES 2 B 291 ARG PHE ALA GLU VAL ASP VAL ASP GLY PRO LEU LYS LEU SEQRES 3 B 291 HIS TYR HIS GLU ALA GLY VAL GLY ASN ASP GLN THR VAL SEQRES 4 B 291 VAL LEU LEU HIS GLY GLY GLY PRO GLY ALA ALA SER TRP SEQRES 5 B 291 THR ASN PHE SER ARG ASN ILE ALA VAL LEU ALA ARG HIS SEQRES 6 B 291 PHE HIS VAL LEU ALA VAL ASP GLN PRO GLY TYR GLY HIS SEQRES 7 B 291 SER ASP LYS ARG ALA GLU HIS GLY GLN PHE ASN ARG TYR SEQRES 8 B 291 ALA ALA MET ALA LEU LYS GLY LEU PHE ASP GLN LEU GLY SEQRES 9 B 291 LEU GLY ARG VAL PRO LEU VAL GLY ASN ALA LEU GLY GLY SEQRES 10 B 291 GLY THR ALA VAL ARG PHE ALA LEU ASP TYR PRO ALA ARG SEQRES 11 B 291 ALA GLY ARG LEU VAL LEU MET GLY PRO GLY GLY LEU SER SEQRES 12 B 291 ILE ASN LEU PHE ALA PRO ASP PRO THR GLU GLY VAL LYS SEQRES 13 B 291 ARG LEU SER LYS PHE SER VAL ALA PRO THR ARG GLU ASN SEQRES 14 B 291 LEU GLU ALA PHE LEU ARG VAL MET VAL TYR ASP LYS ASN SEQRES 15 B 291 LEU ILE THR PRO GLU LEU VAL ASP GLN ARG PHE ALA LEU SEQRES 16 B 291 ALA SER THR PRO GLU SER LEU THR ALA THR ARG ALA MET SEQRES 17 B 291 GLY LYS SER PHE ALA GLY ALA ASP PHE GLU ALA GLY MET SEQRES 18 B 291 MET TRP ARG GLU VAL TYR ARG LEU ARG GLN PRO VAL LEU SEQRES 19 B 291 LEU ILE TRP GLY ARG GLU ASP ARG VAL ASN PRO LEU ASP SEQRES 20 B 291 GLY ALA LEU VAL ALA LEU LYS THR ILE PRO ARG ALA GLN SEQRES 21 B 291 LEU HIS VAL PHE GLY GLN CYS GLY HIS TRP VAL GLN VAL SEQRES 22 B 291 GLU LYS PHE ASP GLU PHE ASN LYS LEU THR ILE GLU PHE SEQRES 23 B 291 LEU GLY GLY GLY ARG HET GOL A1289 6 HET SCN A1290 3 HET KEM B1289 25 HET GOL B1290 6 HETNAM GOL GLYCEROL HETNAM SCN THIOCYANATE ION HETNAM KEM (3E,5R)-8-[(1S,3AR,4R,7AS)-1-HYDROXY-7A-METHYL-5- HETNAM 2 KEM OXOOCTAHYDRO-1H-INDEN-4-YL]-5-METHYL-2,6-DIOXOOCT-3- HETNAM 3 KEM ENOATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 SCN C N S 1- FORMUL 5 KEM C19 H25 O6 1- FORMUL 7 HOH *183(H2 O) HELIX 1 1 THR A 8 THR A 12 1 5 HELIX 2 2 ALA A 50 PHE A 55 1 6 HELIX 3 3 ASN A 58 ALA A 63 1 6 HELIX 4 4 GLN A 87 LYS A 97 1 11 HELIX 5 5 THR A 119 TYR A 127 1 9 HELIX 6 6 VAL A 155 ALA A 164 1 10 HELIX 7 7 THR A 166 VAL A 176 1 11 HELIX 8 8 ASP A 180 ILE A 184 5 5 HELIX 9 9 THR A 185 SER A 197 1 13 HELIX 10 10 THR A 198 MET A 208 1 11 HELIX 11 11 MET A 221 GLU A 225 5 5 HELIX 12 12 GLU A 225 LEU A 229 5 5 HELIX 13 13 ALA A 249 ILE A 256 1 8 HELIX 14 14 TRP A 270 LYS A 275 1 6 HELIX 15 15 LYS A 275 LEU A 287 1 13 HELIX 16 16 THR B 8 THR B 12 1 5 HELIX 17 17 ALA B 50 PHE B 55 1 6 HELIX 18 18 PHE B 55 ALA B 63 1 9 HELIX 19 19 GLN B 87 LYS B 97 1 11 HELIX 20 20 THR B 119 TYR B 127 1 9 HELIX 21 21 VAL B 155 ALA B 164 1 10 HELIX 22 22 THR B 166 VAL B 176 1 11 HELIX 23 23 ASP B 180 ILE B 184 5 5 HELIX 24 24 THR B 185 SER B 197 1 13 HELIX 25 25 THR B 198 MET B 208 1 11 HELIX 26 26 MET B 221 GLU B 225 5 5 HELIX 27 27 GLU B 225 LEU B 229 5 5 HELIX 28 28 ALA B 249 ILE B 256 1 8 HELIX 29 29 TRP B 270 LYS B 275 1 6 HELIX 30 30 LYS B 275 LEU B 287 1 13 SHEET 1 AA 5 SER A 13 VAL A 18 0 SHEET 2 AA 5 LEU A 24 ALA A 31 -1 O LEU A 24 N VAL A 18 SHEET 3 AA 5 HIS A 67 VAL A 71 -1 O VAL A 68 N ALA A 31 SHEET 4 AA 5 THR A 38 LEU A 42 1 O VAL A 39 N LEU A 69 SHEET 5 AA 5 LEU A 110 VAL A 111 1 O VAL A 111 N LEU A 42 SHEET 1 AB 3 LEU A 134 LEU A 136 0 SHEET 2 AB 3 VAL A 233 TRP A 237 1 O LEU A 234 N LEU A 136 SHEET 3 AB 3 ALA A 259 VAL A 263 1 O GLN A 260 N LEU A 235 SHEET 1 BA 5 SER B 13 VAL B 18 0 SHEET 2 BA 5 LEU B 24 ALA B 31 -1 O LEU B 24 N VAL B 18 SHEET 3 BA 5 HIS B 67 VAL B 71 -1 O VAL B 68 N ALA B 31 SHEET 4 BA 5 THR B 38 LEU B 42 1 O VAL B 39 N LEU B 69 SHEET 5 BA 5 LEU B 110 VAL B 111 1 O VAL B 111 N LEU B 42 SHEET 1 BB 3 LEU B 134 LEU B 136 0 SHEET 2 BB 3 VAL B 233 TRP B 237 1 O LEU B 234 N LEU B 136 SHEET 3 BB 3 ALA B 259 VAL B 263 1 O GLN B 260 N LEU B 235 CISPEP 1 ASP A 150 PRO A 151 0 -0.04 CISPEP 2 ASP B 150 PRO B 151 0 -3.21 SITE 1 AC1 13 GLY B 44 GLY B 45 GLY B 46 ALA B 49 SITE 2 AC1 13 ASN B 54 ALA B 114 LEU B 115 LEU B 158 SITE 3 AC1 13 ARG B 192 PHE B 212 HIS B 269 TRP B 270 SITE 4 AC1 13 HOH B2093 SITE 1 AC2 5 PHE A 9 TRP A 52 HOH A2089 HOH A2090 SITE 2 AC2 5 ARG B 167 SITE 1 AC3 1 PHE B 15 SITE 1 AC4 5 ARG A 130 TYR B 127 PRO B 128 ALA B 129 SITE 2 AC4 5 ARG B 130 CRYST1 111.883 117.971 180.893 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008938 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005528 0.00000 MTRIX1 1 0.025519 0.999653 -0.006465 30.92380 1 MTRIX2 1 0.999663 -0.025549 -0.004620 -30.90240 1 MTRIX3 1 -0.004783 -0.006345 -0.999968 44.96370 1