HEADER HYDROLASE 09-OCT-09 2WUW TITLE CRYSTALLOGRAPHIC ANALYSIS OF COUNTER-ION EFFECTS ON SUBTILISIN TITLE 2 ENZYMATIC ACTION IN ACETONITRILE (NATIVE DATA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN CARLSBERG; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: RESIDUES 106-379; COMPND 5 EC: 3.4.21.62 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402 KEYWDS SERINE PROTEASE, METAL-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CIANCI,B.TOMASZEWKI,J.R.HELLIWELL,P.J.HALLING REVDAT 3 20-DEC-23 2WUW 1 REMARK LINK REVDAT 2 13-JUL-11 2WUW 1 REMARK REVDAT 1 08-DEC-10 2WUW 0 JRNL AUTH M.CIANCI,B.TOMASZEWSKI,J.R.HELLIWELL,P.J.HALLING JRNL TITL CRYSTALLOGRAPHIC ANALYSIS OF COUNTERION EFFECTS ON JRNL TITL 2 SUBTILISIN ENZYMATIC ACTION IN ACETONITRILE. JRNL REF J.AM.CHEM.SOC. V. 132 2293 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20099851 JRNL DOI 10.1021/JA908703C REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 10557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1920 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.08000 REMARK 3 B22 (A**2) : -1.57000 REMARK 3 B33 (A**2) : -2.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.396 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.144 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1965 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2672 ; 1.856 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.718 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;34.530 ;25.373 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;15.563 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;15.071 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1480 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 0.855 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2134 ; 1.535 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 617 ; 2.893 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 538 ; 4.340 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.167 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10557 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 44.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 9.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1SCA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SUBTILISIN WAS CRYSTALLIZED BY THE REMARK 280 BATCH METHOD FROM BUFFER SOLUTION SATURATED WITH NA2SO4 ABOUT 13% REMARK 280 (W/V) AS PRECIPITANT (PETSKO AND TSERNOGLOU 1976). REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.33400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.99450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.65700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.99450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.33400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.65700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N CCN E 1282 O HOH E 2123 1.33 REMARK 500 N GLY E 131 O HOH E 2061 1.51 REMARK 500 CB SER E 188 O HOH E 2089 1.53 REMARK 500 CB ASN E 141 O HOH E 2068 1.68 REMARK 500 C1 CCN E 1282 O HOH E 2123 1.84 REMARK 500 O HOH E 2011 O HOH E 2012 1.94 REMARK 500 CB ASN E 43 O HOH E 2018 1.96 REMARK 500 CG GLN E 137 O HOH E 2066 2.05 REMARK 500 ND2 ASN E 185 O HOH E 2085 2.16 REMARK 500 CA ASN E 141 O HOH E 2068 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 2007 O HOH E 2111 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA E 55 C TYR E 57 N 0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 32 -148.57 -152.12 REMARK 500 ALA E 73 17.43 -148.86 REMARK 500 ASN E 77 -158.29 -162.57 REMARK 500 VAL E 81 -169.76 -116.21 REMARK 500 SER E 159 81.46 -164.26 REMARK 500 THR E 213 -154.20 -133.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA E 55 10.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1279 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN E 2 OE1 REMARK 620 2 ASP E 41 OD2 154.5 REMARK 620 3 ASP E 41 OD1 154.2 50.2 REMARK 620 4 LEU E 75 O 76.9 107.2 87.7 REMARK 620 5 ASN E 77 OD1 76.2 128.4 82.7 87.8 REMARK 620 6 THR E 79 O 88.1 91.9 101.1 160.1 75.8 REMARK 620 7 VAL E 81 O 82.8 72.2 118.2 90.1 158.9 101.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E1277 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA E 37 O REMARK 620 2 HIS E 39 O 106.4 REMARK 620 3 LEU E 42 O 103.1 90.0 REMARK 620 4 HOH E2006 O 90.7 162.8 87.3 REMARK 620 5 HOH E2017 O 100.3 92.7 154.6 82.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E1278 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA E 169 O REMARK 620 2 TYR E 171 O 94.6 REMARK 620 3 VAL E 174 O 107.7 90.2 REMARK 620 4 HOH E2077 O 104.6 84.5 147.6 REMARK 620 5 HOH E2081 O 101.6 162.9 79.6 96.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 1277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CCN E 1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CCN E 1281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CCN E 1282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CCN E 1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CCN E 1284 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SEL RELATED DB: PDB REMARK 900 SELENOSUBTILISIN (CHEMICALLY ENGINEERED MUTANT WITH SER 221 REMARK 900 REPLACED BY SELENOCYSTEINE) REMARK 900 RELATED ID: 1YU6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SUBTILISIN CARLSBERG :OMTKY3 COMPLEX REMARK 900 RELATED ID: 1AVT RELATED DB: PDB REMARK 900 SUBTILISIN CARLSBERG D-PARA-CHLOROPHENYL-1- ACETAMIDO BORONIC ACID REMARK 900 INHIBITOR COMPLEX REMARK 900 RELATED ID: 1R0R RELATED DB: PDB REMARK 900 1.1 ANGSTROM RESOLUTION STRUCTURE OF THE COMPLEX BETWEENTHE PROTEIN REMARK 900 INHIBITOR, OMTKY3, AND THE SERINE PROTEASE,SUBTILISIN CARLSBERG REMARK 900 RELATED ID: 1AV7 RELATED DB: PDB REMARK 900 SUBTILISIN CARLSBERG L-NAPHTHYL-1-ACETAMIDO BORONIC ACID INHIBITOR REMARK 900 COMPLEX REMARK 900 RELATED ID: 2SEC RELATED DB: PDB REMARK 900 SUBTILISIN CARLSBERG COMPLEX WITH GENETICALLY- ENGINEERED N-ACETYL REMARK 900 EGLIN-C REMARK 900 RELATED ID: 1SCN RELATED DB: PDB REMARK 900 SUBTILISIN CARLSBERG COMPLEXED WITH N-(TERT- BUTOXYCARBONYL-ALANYL- REMARK 900 PROLYL-PHENYLALANYL)- O- BENZOYL HYDROXYLAMINE REMARK 900 RELATED ID: 1OYV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOMATO INHIBITOR-II IN A TERNARYCOMPLEX WITH REMARK 900 SUBTILISIN CARLSBERG REMARK 900 RELATED ID: 1C3L RELATED DB: PDB REMARK 900 SUBTILISIN-CARLSBERG COMPLEXED WITH XENON (8 BAR) REMARK 900 RELATED ID: 1VSB RELATED DB: PDB REMARK 900 SUBTILISIN CARLSBERG L-PARA-CHLOROPHENYL-1- ACETAMIDO BORONIC ACID REMARK 900 INHIBITOR COMPLEX REMARK 900 RELATED ID: 3VSB RELATED DB: PDB REMARK 900 SUBTILISIN CARLSBERG D-NAPHTHYL-1-ACETAMIDO BORONIC ACID INHIBITOR REMARK 900 COMPLEX REMARK 900 RELATED ID: 2WUV RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC ANALYSIS OF COUNTER-ION EFFECTS ON SUBTILISIN REMARK 900 ENZYMATIC ACTION IN ACETONITRILE DBREF 2WUW E 1 55 UNP P00780 SUBT_BACLI 106 160 DBREF 2WUW E 57 275 UNP P00780 SUBT_BACLI 161 379 SEQADV 2WUW SER E 103 UNP P00780 THR 207 CONFLICT SEQADV 2WUW ALA E 129 UNP P00780 PRO 233 CONFLICT SEQADV 2WUW ASN E 158 UNP P00780 SER 262 CONFLICT SEQADV 2WUW SER E 161 UNP P00780 ASN 265 CONFLICT SEQADV 2WUW ASN E 212 UNP P00780 SER 316 CONFLICT SEQRES 1 E 274 ALA GLN THR VAL PRO TYR GLY ILE PRO LEU ILE LYS ALA SEQRES 2 E 274 ASP LYS VAL GLN ALA GLN GLY PHE LYS GLY ALA ASN VAL SEQRES 3 E 274 LYS VAL ALA VAL LEU ASP THR GLY ILE GLN ALA SER HIS SEQRES 4 E 274 PRO ASP LEU ASN VAL VAL GLY GLY ALA SER PHE VAL ALA SEQRES 5 E 274 GLY GLU ALA TYR ASN THR ASP GLY ASN GLY HIS GLY THR SEQRES 6 E 274 HIS VAL ALA GLY THR VAL ALA ALA LEU ASP ASN THR THR SEQRES 7 E 274 GLY VAL LEU GLY VAL ALA PRO SER VAL SER LEU TYR ALA SEQRES 8 E 274 VAL LYS VAL LEU ASN SER SER GLY SER GLY SER TYR SER SEQRES 9 E 274 GLY ILE VAL SER GLY ILE GLU TRP ALA THR THR ASN GLY SEQRES 10 E 274 MET ASP VAL ILE ASN MET SER LEU GLY GLY ALA SER GLY SEQRES 11 E 274 SER THR ALA MET LYS GLN ALA VAL ASP ASN ALA TYR ALA SEQRES 12 E 274 ARG GLY VAL VAL VAL VAL ALA ALA ALA GLY ASN SER GLY SEQRES 13 E 274 ASN SER GLY SER THR ASN THR ILE GLY TYR PRO ALA LYS SEQRES 14 E 274 TYR ASP SER VAL ILE ALA VAL GLY ALA VAL ASP SER ASN SEQRES 15 E 274 SER ASN ARG ALA SER PHE SER SER VAL GLY ALA GLU LEU SEQRES 16 E 274 GLU VAL MET ALA PRO GLY ALA GLY VAL TYR SER THR TYR SEQRES 17 E 274 PRO THR ASN THR TYR ALA THR LEU ASN GLY THR SER MET SEQRES 18 E 274 ALA SER PRO HIS VAL ALA GLY ALA ALA ALA LEU ILE LEU SEQRES 19 E 274 SER LYS HIS PRO ASN LEU SER ALA SER GLN VAL ARG ASN SEQRES 20 E 274 ARG LEU SER SER THR ALA THR TYR LEU GLY SER SER PHE SEQRES 21 E 274 TYR TYR GLY LYS GLY LEU ILE ASN VAL GLU ALA ALA ALA SEQRES 22 E 274 GLN HET SO4 E1276 5 HET NA E1277 1 HET NA E1278 1 HET CA E1279 1 HET CCN E1280 3 HET CCN E1281 3 HET CCN E1282 3 HET CCN E1283 3 HET CCN E1284 3 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM CCN ACETONITRILE FORMUL 2 SO4 O4 S 2- FORMUL 3 NA 2(NA 1+) FORMUL 5 CA CA 2+ FORMUL 6 CCN 5(C2 H3 N) FORMUL 11 HOH *125(H2 O) HELIX 1 1 LYS E 12 GLN E 19 1 8 HELIX 2 2 ILE E 111 ASN E 117 1 7 HELIX 3 3 SER E 132 ARG E 145 1 14 HELIX 4 4 ALA E 223 ALA E 228 1 6 HELIX 5 5 ALA E 230 HIS E 238 1 9 HELIX 6 6 SER E 242 THR E 253 1 12 HELIX 7 7 ASN E 269 ALA E 274 1 6 SHEET 1 EA 5 SER E 87 LYS E 94 0 SHEET 2 EA 5 ALA E 24 ASP E 32 1 N ASN E 25 O SER E 87 SHEET 3 EA 5 VAL E 121 MET E 124 1 O VAL E 121 N ALA E 29 SHEET 4 EA 5 VAL E 148 ALA E 152 1 O VAL E 148 N ILE E 122 SHEET 5 EA 5 ILE E 175 VAL E 177 1 O ILE E 175 N ALA E 151 SHEET 1 EB 2 TYR E 206 TYR E 209 0 SHEET 2 EB 2 THR E 213 THR E 216 -1 O THR E 213 N TYR E 209 LINK OE1 GLN E 2 CA CA E1279 1555 1555 2.55 LINK O ALA E 37 NA NA E1277 1555 1555 2.54 LINK O HIS E 39 NA NA E1277 1555 1555 2.36 LINK OD2 ASP E 41 CA CA E1279 1555 1555 2.63 LINK OD1 ASP E 41 CA CA E1279 1555 1555 2.46 LINK O LEU E 42 NA NA E1277 1555 1555 2.42 LINK O LEU E 75 CA CA E1279 1555 1555 2.46 LINK OD1 ASN E 77 CA CA E1279 1555 1555 2.27 LINK O THR E 79 CA CA E1279 1555 1555 2.46 LINK O VAL E 81 CA CA E1279 1555 1555 2.21 LINK O ALA E 169 NA NA E1278 1555 1555 2.46 LINK O TYR E 171 NA NA E1278 1555 1555 2.43 LINK O VAL E 174 NA NA E1278 1555 1555 2.24 LINK NA NA E1277 O HOH E2006 1555 1555 3.18 LINK NA NA E1277 O HOH E2017 1555 1555 2.30 LINK NA NA E1278 O HOH E2077 1555 1555 2.20 LINK NA NA E1278 O HOH E2081 1555 1555 2.48 CISPEP 1 TYR E 167 PRO E 168 0 12.70 CISPEP 2 PRO E 210 THR E 211 0 -5.67 SITE 1 AC1 6 PRO E 5 TYR E 6 ALA E 52 GLY E 53 SITE 2 AC1 6 TYR E 256 SER E 259 SITE 1 AC2 5 ALA E 37 SER E 38 HIS E 39 LEU E 42 SITE 2 AC2 5 HOH E2017 SITE 1 AC3 5 ALA E 169 TYR E 171 VAL E 174 HOH E2077 SITE 2 AC3 5 HOH E2081 SITE 1 AC4 6 GLN E 2 ASP E 41 LEU E 75 ASN E 77 SITE 2 AC4 6 THR E 79 VAL E 81 SITE 1 AC5 5 LEU E 126 GLY E 127 ALA E 152 GLY E 154 SITE 2 AC5 5 HOH E2121 SITE 1 AC6 3 HIS E 64 ASN E 218 HOH E2071 SITE 1 AC7 6 GLY E 61 ASN E 62 ASN E 117 PRO E 210 SITE 2 AC7 6 HOH E2122 HOH E2123 SITE 1 AC8 4 TYR E 143 ALA E 243 SER E 244 HOH E2124 SITE 1 AC9 3 THR E 116 ARG E 145 HOH E2125 CRYST1 52.668 55.314 75.989 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018987 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013160 0.00000