HEADER HYDROLASE/PEPTIDE 13-OCT-09 2WV4 TITLE CRYSTAL STRUCTURE OF FOOT-AND-MOUTH DISEASE VIRUS 3C PROTEASE IN TITLE 2 COMPLEX WITH A DECAMERIC PEPTIDE CORRESPONDING TO THE VP1-2A CLEAVAGE TITLE 3 JUNCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PICORNAIN 3C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FOOT-AND-MOUTH DISEASE VIRUS 3C PROTEASE, PROTEASE 3C, P3C, COMPND 5 PROTEASE P20B; COMPND 6 EC: 3.4.22.28; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: FOOT AND MOUTH DISEASE VIRUS (SEROTYPE A) VARIANT VP1 COMPND 11 CAPSID PROTEIN; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: VP1-2A CLEAVAGE JUNCTION (P5-P5'), RESIDUES 29-38; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 3 ORGANISM_TAXID: 12112; SOURCE 4 STRAIN: A10-61; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETMLL-G3CPRO(1-207); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS; SOURCE 12 ORGANISM_TAXID: 12112 KEYWDS HYDROLASE PEPTIDE COMPLEX, 3C PROTEASE, HYDROLASE, VIRAL PROTEIN, KEYWDS 2 HYDROLASE-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.ZUNSZAIN,S.R.KNOX,T.R.SWEENEY,J.YANG,N.ROQUE-ROSELL,G.J.BELSHAM, AUTHOR 2 R.J.LEATHERBARROW,S.CURRY REVDAT 4 20-DEC-23 2WV4 1 SHEET LINK REVDAT 3 09-FEB-10 2WV4 1 JRNL REMARK REVDAT 2 17-NOV-09 2WV4 1 JRNL REVDAT 1 27-OCT-09 2WV4 0 JRNL AUTH P.A.ZUNSZAIN,S.R.KNOX,T.R.SWEENEY,J.YANG,N.ROQUE-ROSELL, JRNL AUTH 2 G.J.BELSHAM,R.J.LEATHERBARROW,S.CURRY JRNL TITL INSIGHTS INTO CLEAVAGE SPECIFICITY FROM THE CRYSTAL JRNL TITL 2 STRUCTURE OF FOOT-AND-MOUTH DISEASE VIRUS 3C PROTEASE JRNL TITL 3 COMPLEXED WITH A PEPTIDE SUBSTRATE. JRNL REF J.MOL.BIOL. V. 395 375 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19883658 JRNL DOI 10.1016/J.JMB.2009.10.048 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1028469.160 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 14014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1793 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 88 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.76000 REMARK 3 B22 (A**2) : -1.85000 REMARK 3 B33 (A**2) : 9.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.390 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.000 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 63.68 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CAPPING.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CAPPING.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2WV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14044 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2J92 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE PAPER, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.38000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.38000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS1744 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS1791 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS1812 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS1744 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS1791 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS1812 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 PRO A 208 REMARK 465 GLU A 209 REMARK 465 PRO A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 GLU A 213 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 78 REMARK 465 GLN B 79 REMARK 465 ASP B 80 REMARK 465 LYS B 170 REMARK 465 ASP B 171 REMARK 465 GLY B 172 REMARK 465 PRO B 208 REMARK 465 GLU B 209 REMARK 465 PRO B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 GLU B 213 REMARK 465 ASP C 11 REMARK 465 ASP D 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LEU A 57 CG CD1 CD2 REMARK 470 ASP A 58 CG OD1 OD2 REMARK 470 ARG A 68 CD NE CZ NH1 NH2 REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 110 CE NZ REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 155 CD CE NZ REMARK 470 ARG A 159 NE CZ NH1 NH2 REMARK 470 LYS A 170 NZ REMARK 470 ASP A 171 CG OD1 OD2 REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 MET A 198 CG SD CE REMARK 470 GLN A 200 CG CD OE1 NE2 REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 203 NZ REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 ASP B 7 CG OD1 OD2 REMARK 470 LEU B 8 CG CD1 CD2 REMARK 470 GLN B 9 CG CD OE1 NE2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 LYS B 17 CE NZ REMARK 470 GLU B 20 CD OE1 OE2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 LYS B 26 CE NZ REMARK 470 LYS B 51 CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 LYS B 95 CE NZ REMARK 470 ARG B 97 CD NE CZ NH1 NH2 REMARK 470 LYS B 101 CD CE NZ REMARK 470 ARG B 108 CD NE CZ NH1 NH2 REMARK 470 MET B 109 CG SD CE REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 LYS B 137 CD CE NZ REMARK 470 LYS B 155 CE NZ REMARK 470 ASP B 174 CG OD1 OD2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 LYS B 203 CD CE NZ REMARK 470 ASP B 207 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 31 -173.95 -173.23 REMARK 500 ASP A 58 76.56 46.44 REMARK 500 ASP A 64 -3.79 -58.71 REMARK 500 LEU A 134 -117.61 -118.22 REMARK 500 SER A 182 -36.07 -130.95 REMARK 500 VAL A 206 -103.65 -102.74 REMARK 500 CYS B 31 -169.81 -171.63 REMARK 500 PHE B 37 152.93 175.23 REMARK 500 ASP B 105 -44.23 -168.97 REMARK 500 THR B 106 40.51 -66.95 REMARK 500 ALA B 107 -174.95 165.68 REMARK 500 ARG B 108 138.73 -175.23 REMARK 500 MET B 109 -162.28 -56.15 REMARK 500 LYS B 110 117.41 -175.43 REMARK 500 LYS B 111 129.59 -23.67 REMARK 500 ASN B 120 83.06 -162.16 REMARK 500 LEU B 134 -96.22 -134.35 REMARK 500 TYR B 154 148.01 -170.12 REMARK 500 ASN B 186 56.42 28.83 REMARK 500 PRO C 3 145.20 -38.31 REMARK 500 GLN C 6 57.10 -113.47 REMARK 500 GLN D 6 51.35 -106.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZBE RELATED DB: PDB REMARK 900 FOOT-AND MOUTH DISEASE VIRUS SEROTYPE A1061 REMARK 900 RELATED ID: 2J92 RELATED DB: PDB REMARK 900 3C PROTEASE FROM TYPE A10(61) FOOT-AND- MOUTH DISEASE VIRUS - REMARK 900 CRYSTAL PACKING MUTANT (K51Q) REMARK 900 RELATED ID: 1ZBA RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS SEROTYPE A1061 COMPLEXED REMARK 900 WITHOLIGOSACCHARIDE RECEPTOR. REMARK 900 RELATED ID: 2BHG RELATED DB: PDB REMARK 900 3C PROTEASE FROM TYPE A10(61) FOOT-AND- MOUTH DISEASE VIRUS REMARK 900 RELATED ID: 2WV5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FOOT-AND-MOUTH DISEASE VIRUS 3C PROTEASE IN REMARK 900 COMPLEX WITH A DECAMERIC PEPTIDE CORRESPONDING TO THE VP1- 2A REMARK 900 CLEAVAGE JUNCTION WITH A GLN TO GLU SUBSTITUTION AT P1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONTAINS ADDITIONAL GLY AS RESIDUE 1. LAST 6 RESIDUES AT C- REMARK 999 TERM MISSING FROM OUR STRUCTURE. SEQUENCE DATABASE ENTRY REMARK 999 FOR THIS PROTEIN CONTAINS KNOWN ERRORS. DBREF 2WV4 A 0 0 PDB 2WV4 2WV4 0 0 DBREF 2WV4 A 1 213 UNP P03306 POLG_FMDV1 1650 1862 DBREF 2WV4 B 0 0 PDB 2WV4 2WV4 0 0 DBREF 2WV4 B 1 213 UNP P03306 POLG_FMDV1 1650 1862 DBREF 2WV4 C 1 1 PDB 2WV4 2WV4 1 1 DBREF 2WV4 C 2 11 UNP Q65050 Q65050_9PICO 29 38 DBREF 2WV4 D 1 1 PDB 2WV4 2WV4 1 1 DBREF 2WV4 D 2 11 UNP Q65050 Q65050_9PICO 29 38 SEQADV 2WV4 ILE A 22 UNP P03306 ASN 1671 SEE REMARK 999 SEQADV 2WV4 MET A 88 UNP P03306 ILE 1737 SEE REMARK 999 SEQADV 2WV4 LYS A 95 UNP P03306 CYS 1744 ENGINEERED MUTATION SEQADV 2WV4 LEU A 142 UNP P03306 CYS 1791 ENGINEERED MUTATION SEQADV 2WV4 ALA A 163 UNP P03306 CYS 1812 ENGINEERED MUTATION SEQADV 2WV4 ILE B 22 UNP P03306 ASN 1671 SEE REMARK 999 SEQADV 2WV4 MET B 88 UNP P03306 ILE 1737 SEE REMARK 999 SEQADV 2WV4 LYS B 95 UNP P03306 CYS 1744 ENGINEERED MUTATION SEQADV 2WV4 LEU B 142 UNP P03306 CYS 1791 ENGINEERED MUTATION SEQADV 2WV4 ALA B 163 UNP P03306 CYS 1812 ENGINEERED MUTATION SEQRES 1 A 214 GLY SER GLY ALA PRO PRO THR ASP LEU GLN LYS MET VAL SEQRES 2 A 214 MET GLY ASN THR LYS PRO VAL GLU LEU ILE LEU ASP GLY SEQRES 3 A 214 LYS THR VAL ALA ILE CYS CYS ALA THR GLY VAL PHE GLY SEQRES 4 A 214 THR ALA TYR LEU VAL PRO ARG HIS LEU PHE ALA GLU LYS SEQRES 5 A 214 TYR ASP LYS ILE MET LEU ASP GLY ARG ALA MET THR ASP SEQRES 6 A 214 SER ASP TYR ARG VAL PHE GLU PHE GLU ILE LYS VAL LYS SEQRES 7 A 214 GLY GLN ASP MET LEU SER ASP ALA ALA LEU MET VAL LEU SEQRES 8 A 214 HIS ARG GLY ASN LYS VAL ARG ASP ILE THR LYS HIS PHE SEQRES 9 A 214 ARG ASP THR ALA ARG MET LYS LYS GLY THR PRO VAL VAL SEQRES 10 A 214 GLY VAL VAL ASN ASN ALA ASP VAL GLY ARG LEU ILE PHE SEQRES 11 A 214 SER GLY GLU ALA LEU THR TYR LYS ASP ILE VAL VAL LEU SEQRES 12 A 214 MET ASP GLY ASP THR MET PRO GLY LEU PHE ALA TYR LYS SEQRES 13 A 214 ALA ALA THR ARG ALA GLY TYR ALA GLY GLY ALA VAL LEU SEQRES 14 A 214 ALA LYS ASP GLY ALA ASP THR PHE ILE VAL GLY THR HIS SEQRES 15 A 214 SER ALA GLY GLY ASN GLY VAL GLY TYR CYS SER CYS VAL SEQRES 16 A 214 SER ARG SER MET LEU GLN LYS MET LYS ALA HIS VAL ASP SEQRES 17 A 214 PRO GLU PRO HIS HIS GLU SEQRES 1 B 214 GLY SER GLY ALA PRO PRO THR ASP LEU GLN LYS MET VAL SEQRES 2 B 214 MET GLY ASN THR LYS PRO VAL GLU LEU ILE LEU ASP GLY SEQRES 3 B 214 LYS THR VAL ALA ILE CYS CYS ALA THR GLY VAL PHE GLY SEQRES 4 B 214 THR ALA TYR LEU VAL PRO ARG HIS LEU PHE ALA GLU LYS SEQRES 5 B 214 TYR ASP LYS ILE MET LEU ASP GLY ARG ALA MET THR ASP SEQRES 6 B 214 SER ASP TYR ARG VAL PHE GLU PHE GLU ILE LYS VAL LYS SEQRES 7 B 214 GLY GLN ASP MET LEU SER ASP ALA ALA LEU MET VAL LEU SEQRES 8 B 214 HIS ARG GLY ASN LYS VAL ARG ASP ILE THR LYS HIS PHE SEQRES 9 B 214 ARG ASP THR ALA ARG MET LYS LYS GLY THR PRO VAL VAL SEQRES 10 B 214 GLY VAL VAL ASN ASN ALA ASP VAL GLY ARG LEU ILE PHE SEQRES 11 B 214 SER GLY GLU ALA LEU THR TYR LYS ASP ILE VAL VAL LEU SEQRES 12 B 214 MET ASP GLY ASP THR MET PRO GLY LEU PHE ALA TYR LYS SEQRES 13 B 214 ALA ALA THR ARG ALA GLY TYR ALA GLY GLY ALA VAL LEU SEQRES 14 B 214 ALA LYS ASP GLY ALA ASP THR PHE ILE VAL GLY THR HIS SEQRES 15 B 214 SER ALA GLY GLY ASN GLY VAL GLY TYR CYS SER CYS VAL SEQRES 16 B 214 SER ARG SER MET LEU GLN LYS MET LYS ALA HIS VAL ASP SEQRES 17 B 214 PRO GLU PRO HIS HIS GLU SEQRES 1 C 11 ACE ALA PRO ALA LYS GLN LEU LEU ASN PHE ASP SEQRES 1 D 11 ACE ALA PRO ALA LYS GLN LEU LEU ASN PHE ASP HET ACE C 1 3 HET ACE D 1 3 HETNAM ACE ACETYL GROUP FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 HOH *33(H2 O) HELIX 1 1 ASP A 7 ASN A 15 1 9 HELIX 2 2 HIS A 46 GLU A 50 5 5 HELIX 3 3 ILE A 99 PHE A 103 5 5 HELIX 4 4 SER A 195 VAL A 206 1 12 HELIX 5 5 THR B 6 ASN B 15 1 10 HELIX 6 6 HIS B 46 GLU B 50 5 5 HELIX 7 7 THR B 63 SER B 65 5 3 HELIX 8 8 ILE B 99 PHE B 103 5 5 HELIX 9 9 SER B 195 ASP B 207 1 13 SHEET 1 AA 5 ARG A 60 MET A 62 0 SHEET 2 AA 5 LYS A 54 LEU A 57 -1 O ILE A 55 N MET A 62 SHEET 3 AA 5 THR A 16 LEU A 23 -1 O GLU A 20 N MET A 56 SHEET 4 AA 5 LYS A 26 PHE A 37 -1 O LYS A 26 N LEU A 23 SHEET 5 AA 5 LEU C 8 ASN C 9 -1 O LEU C 8 N ILE A 30 SHEET 1 AB 2 ARG A 60 MET A 62 0 SHEET 2 AB 2 LYS A 26 PHE A 37 -1 O LYS A 26 N LEU A 23 SHEET 1 AC 2 GLU A 73 VAL A 76 0 SHEET 2 AC 2 GLN A 79 LEU A 82 -1 O GLN A 79 N VAL A 76 SHEET 1 CA 5 ALA C 4 LYS C 5 0 SHEET 2 CA 5 ASP A 174 GLY A 185 -1 O GLY A 184 N ALA C 4 SHEET 3 CA 5 ALA A 166 ASP A 171 -1 O VAL A 167 N VAL A 178 SHEET 4 CA 5 PRO A 114 ASN A 121 -1 O PRO A 114 N LYS A 170 SHEET 5 CA 5 GLY A 125 VAL A 141 -1 O GLY A 125 N ASN A 121 SHEET 1 CB 2 ALA C 4 LYS C 5 0 SHEET 2 CB 2 GLY A 125 VAL A 141 -1 O GLU A 132 N LYS A 155 SHEET 1 BA 5 ARG B 60 MET B 62 0 SHEET 2 BA 5 LYS B 54 LEU B 57 -1 O ILE B 55 N MET B 62 SHEET 3 BA 5 THR B 16 LEU B 23 -1 O GLU B 20 N MET B 56 SHEET 4 BA 5 LYS B 26 PHE B 37 -1 O LYS B 26 N LEU B 23 SHEET 5 BA 5 LEU D 8 ASN D 9 -1 O LEU D 8 N ILE B 30 SHEET 1 BB 2 ARG B 60 MET B 62 0 SHEET 2 BB 2 LYS B 26 PHE B 37 -1 O LYS B 26 N LEU B 23 LINK C ACE C 1 N ALA C 2 1555 1555 1.33 LINK C ACE D 1 N ALA D 2 1555 1555 1.34 CRYST1 64.760 75.250 85.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015442 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011632 0.00000 MTRIX1 1 -0.969600 0.077900 0.232100 -1.43130 1 MTRIX2 1 0.168800 0.899400 0.403200 -10.74700 1 MTRIX3 1 -0.177300 0.430100 -0.885200 31.26590 1