HEADER HYDROLASE 20-OCT-09 2WVU TITLE CRYSTAL STRUCTURE OF A MICHAELIS COMPLEX OF ALPHA-L-FUCOSIDASE GH29 TITLE 2 FROM BACTEROIDES THETAIOTAOMICRON WITH THE SYNTHETIC SUBSTRATE 4- TITLE 3 NITROPHENYL-ALPHA-L-FUCOSE CAVEAT 2WVU JFZ A 2001 HAS WRONG CHIRALITY AT ATOM C3 JFZ B 2001 HAS CAVEAT 2 2WVU WRONG CHIRALITY AT ATOM C3 JFZ C 2001 HAS WRONG CHIRALITY CAVEAT 3 2WVU AT ATOM C3 JFZ D 2001 HAS WRONG CHIRALITY AT ATOM C3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-L-FUCOSIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 31-473; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ALPHA-L-FUCOSE, HYDROLASE, GLYCOSIDE HYDROLASE FAMILY 29 EXPDTA X-RAY DIFFRACTION AUTHOR A.LAMMERTS VAN BUEREN,A.ARDEVOL,J.FAYERS-KERR,B.LUO,Y.ZHANG, AUTHOR 2 M.SOLLOGOUB,Y.BLERIOT,C.ROVIRA,G.J.DAVIES REVDAT 4 29-JUL-20 2WVU 1 COMPND REMARK HETNAM SITE REVDAT 4 2 1 ATOM REVDAT 3 27-FEB-19 2WVU 1 CAVEAT COMPND REMARK HET REVDAT 3 2 1 HETNAM FORMUL SITE ATOM REVDAT 2 15-JUN-11 2WVU 1 JRNL REMARK REVDAT 1 02-FEB-10 2WVU 0 JRNL AUTH A.LAMMERTS VAN BUEREN,A.ARDEVOL,J.FAYERS-KERR,B.LUO,Y.ZHANG, JRNL AUTH 2 M.SOLLOGOUB,Y.BLERIOT,C.ROVIRA,G.J.DAVIES JRNL TITL ANALYSIS OF THE REACTION COORDINATE OF ALPHA-L-FUCOSIDASES: JRNL TITL 2 A COMBINED STRUCTURAL AND QUANTUM MECHANICAL APPROACH JRNL REF J.AM.CHEM.SOC. V. 132 1804 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20092273 JRNL DOI 10.1021/JA908908Q REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 131113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9669 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 462 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 14248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 1394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 1.39000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.833 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 14792 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 20073 ; 1.344 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1746 ; 5.894 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 712 ;33.279 ;24.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2469 ;16.017 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 76 ;22.574 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2025 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11416 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 8691 ; 0.710 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 13998 ; 1.288 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6101 ; 2.136 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6074 ; 3.385 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 2WVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041441. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 92.41000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 LYS A 33 REMARK 465 LYS A 34 REMARK 465 ALA A 472 REMARK 465 LYS A 473 REMARK 465 GLU B 31 REMARK 465 ALA B 32 REMARK 465 LYS B 33 REMARK 465 LYS B 34 REMARK 465 ALA B 472 REMARK 465 LYS B 473 REMARK 465 GLU C 31 REMARK 465 ALA C 32 REMARK 465 LYS C 33 REMARK 465 LYS C 34 REMARK 465 ALA C 472 REMARK 465 LYS C 473 REMARK 465 GLU D 31 REMARK 465 ALA D 32 REMARK 465 LYS D 33 REMARK 465 LYS D 34 REMARK 465 ALA D 472 REMARK 465 LYS D 473 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 421 CG CD CE NZ REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 ARG B 470 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 421 CG CD CE NZ REMARK 470 LYS C 424 CG CD CE NZ REMARK 470 ARG C 470 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 421 CG CD CE NZ REMARK 470 LYS D 424 CG CD CE NZ REMARK 470 ARG D 470 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR D 287 O HOH D 2204 1.43 REMARK 500 O TYR A 287 O HOH A 2163 1.51 REMARK 500 CD GLU D 284 O HOH D 2203 1.70 REMARK 500 OE2 GLU D 284 O HOH D 2203 1.93 REMARK 500 OE2 GLU A 390 O HOH A 2234 1.94 REMARK 500 O4 SO4 D 1473 O HOH D 2356 1.97 REMARK 500 OE2 GLU C 438 O HOH C 2357 2.00 REMARK 500 CD LYS C 145 O HOH D 2182 2.05 REMARK 500 OE1 GLU D 284 O HOH D 2203 2.06 REMARK 500 O3 SO4 D 1473 O HOH D 2356 2.10 REMARK 500 O GLY D 286 NH1 ARG D 290 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 264 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 264 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG C 204 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG C 204 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG C 264 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 264 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG D 264 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG D 264 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 -72.58 -91.78 REMARK 500 GLU A 45 -72.11 -84.96 REMARK 500 ARG A 60 -53.28 61.75 REMARK 500 LYS A 94 19.81 57.53 REMARK 500 PRO A 109 75.35 -68.47 REMARK 500 LYS A 157 -39.42 69.71 REMARK 500 HIS A 272 -67.85 65.44 REMARK 500 ARG A 289 6.02 59.49 REMARK 500 ASN A 314 51.43 -155.09 REMARK 500 GLU B 45 -81.69 -72.14 REMARK 500 ARG B 60 -51.94 60.95 REMARK 500 ASN B 108 68.98 -151.24 REMARK 500 LYS B 157 -35.67 65.56 REMARK 500 HIS B 272 -61.62 71.25 REMARK 500 ASN B 314 60.65 -158.31 REMARK 500 ASN B 402 50.31 -117.20 REMARK 500 THR C 43 -62.72 -101.90 REMARK 500 ARG C 60 -52.81 62.04 REMARK 500 ASN C 108 68.93 -154.05 REMARK 500 ASN C 153 42.80 -101.77 REMARK 500 LYS C 157 -31.70 70.71 REMARK 500 HIS C 272 -61.98 72.49 REMARK 500 ARG C 290 75.23 -160.78 REMARK 500 ASN C 314 66.14 -150.61 REMARK 500 GLU D 45 -115.11 -64.21 REMARK 500 ARG D 60 -52.56 61.14 REMARK 500 ASN D 108 66.59 -157.33 REMARK 500 PRO D 109 79.74 -68.11 REMARK 500 LYS D 157 -36.92 65.99 REMARK 500 HIS D 272 -65.08 70.71 REMARK 500 TYR D 287 60.40 -110.78 REMARK 500 ARG D 290 44.86 157.41 REMARK 500 ASN D 314 53.60 -150.08 REMARK 500 VAL D 381 -57.30 -123.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU D 263 ARG D 264 -149.87 REMARK 500 ARG D 289 ARG D 290 -36.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2179 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH D2041 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH D2118 DISTANCE = 6.36 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WVT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES REMARK 900 THETAIOTAOMICRON IN COMPLEX WITH A NOVEL IMINOSUGAR FUCOSIDASE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 2WVS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 TRAPPED COVALENT REMARK 900 INTERMEDIATE FROM BACTEROIDES THETAIOTAOMICRON IN COMPLEX WITH 2- REMARK 900 FLUORO-FUCOSYL FLUORIDE USING AN E288Q MUTANT REMARK 900 RELATED ID: 2WVV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ALPHA-L-FUCOSIDASE GH29 FROM BACTEROIDES REMARK 900 THETAIOTAOMICRON DBREF 2WVU A 31 473 UNP Q8A3I4 Q8A3I4_BACTN 31 473 DBREF 2WVU B 31 473 UNP Q8A3I4 Q8A3I4_BACTN 31 473 DBREF 2WVU C 31 473 UNP Q8A3I4 Q8A3I4_BACTN 31 473 DBREF 2WVU D 31 473 UNP Q8A3I4 Q8A3I4_BACTN 31 473 SEQRES 1 A 443 GLU ALA LYS LYS GLU ILE PRO LEU LYS TYR GLY ALA THR SEQRES 2 A 443 ASN GLU GLY LYS ARG GLN ASP PRO ALA MET GLN LYS PHE SEQRES 3 A 443 ARG ASP ASN ARG LEU GLY ALA PHE ILE HIS TRP GLY LEU SEQRES 4 A 443 TYR ALA ILE PRO GLY GLY GLU TRP ASN GLY LYS VAL TYR SEQRES 5 A 443 GLY GLY ALA ALA GLU TRP LEU LYS SER TRP ALA LYS VAL SEQRES 6 A 443 PRO ALA ASP GLU TRP LEU LYS LEU MET ASP GLN TRP ASN SEQRES 7 A 443 PRO THR LYS PHE ASP ALA LYS LYS TRP ALA LYS MET ALA SEQRES 8 A 443 LYS GLU MET GLY THR LYS TYR VAL LYS ILE THR THR LYS SEQRES 9 A 443 HIS HIS GLU GLY PHE CYS LEU TRP PRO SER LYS TYR THR SEQRES 10 A 443 LYS TYR THR VAL ALA ASN THR PRO TYR LYS ARG ASP ILE SEQRES 11 A 443 LEU GLY GLU LEU VAL LYS ALA TYR ASN ASP GLU GLY ILE SEQRES 12 A 443 ASP VAL HIS PHE TYR PHE SER VAL MET ASP TRP SER ASN SEQRES 13 A 443 PRO ASP TYR ARG TYR ASP ILE LYS SER LYS GLU ASP SER SEQRES 14 A 443 ILE ALA PHE SER ARG PHE LEU GLU PHE THR ASP ASN GLN SEQRES 15 A 443 LEU LYS GLU LEU ALA THR ARG TYR PRO THR VAL LYS ASP SEQRES 16 A 443 PHE TRP PHE ASP GLY THR TRP ASP ALA SER VAL LYS LYS SEQRES 17 A 443 ASN GLY TRP TRP THR ALA HIS ALA GLU GLN MET LEU LYS SEQRES 18 A 443 GLU LEU VAL PRO GLY VAL ALA ILE ASN SER ARG LEU ARG SEQRES 19 A 443 ALA ASP ASP LYS GLY LYS ARG HIS PHE ASP SER ASN GLY SEQRES 20 A 443 ARG LEU MET GLY ASP TYR GLU SER GLY TYR GLU ARG ARG SEQRES 21 A 443 LEU PRO ASP PRO VAL LYS ASP LEU LYS VAL THR GLN TRP SEQRES 22 A 443 ASP TRP GLU ALA CYS MET THR ILE PRO GLU ASN GLN TRP SEQRES 23 A 443 GLY TYR HIS LYS ASP TRP SER LEU SER TYR VAL LYS THR SEQRES 24 A 443 PRO ILE GLU VAL ILE ASP ARG ILE VAL HIS ALA VAL SER SEQRES 25 A 443 MET GLY GLY ASN MET VAL VAL ASN PHE GLY PRO GLN ALA SEQRES 26 A 443 ASP GLY ASP PHE ARG PRO GLU GLU LYS ALA MET ALA THR SEQRES 27 A 443 ALA ILE GLY LYS TRP MET ASN ARG TYR GLY LYS ALA VAL SEQRES 28 A 443 TYR ALA CYS ASP TYR ALA GLY PHE GLU LYS GLN ASP TRP SEQRES 29 A 443 GLY TYR TYR THR ARG GLY LYS ASN ASP GLU VAL TYR MET SEQRES 30 A 443 VAL VAL PHE ASN GLN PRO TYR SER GLU ARG LEU ILE VAL SEQRES 31 A 443 LYS THR PRO LYS GLY ILE THR VAL GLU LYS ALA THR LEU SEQRES 32 A 443 LEU THR THR GLY GLU ASP ILE THR VAL VAL GLU THR THR SEQRES 33 A 443 ARG ASN GLU TYR ASN VAL SER VAL PRO LYS LYS ASN PRO SEQRES 34 A 443 GLY GLU PRO TYR VAL ILE GLN LEU LYS VAL ARG ALA ALA SEQRES 35 A 443 LYS SEQRES 1 B 443 GLU ALA LYS LYS GLU ILE PRO LEU LYS TYR GLY ALA THR SEQRES 2 B 443 ASN GLU GLY LYS ARG GLN ASP PRO ALA MET GLN LYS PHE SEQRES 3 B 443 ARG ASP ASN ARG LEU GLY ALA PHE ILE HIS TRP GLY LEU SEQRES 4 B 443 TYR ALA ILE PRO GLY GLY GLU TRP ASN GLY LYS VAL TYR SEQRES 5 B 443 GLY GLY ALA ALA GLU TRP LEU LYS SER TRP ALA LYS VAL SEQRES 6 B 443 PRO ALA ASP GLU TRP LEU LYS LEU MET ASP GLN TRP ASN SEQRES 7 B 443 PRO THR LYS PHE ASP ALA LYS LYS TRP ALA LYS MET ALA SEQRES 8 B 443 LYS GLU MET GLY THR LYS TYR VAL LYS ILE THR THR LYS SEQRES 9 B 443 HIS HIS GLU GLY PHE CYS LEU TRP PRO SER LYS TYR THR SEQRES 10 B 443 LYS TYR THR VAL ALA ASN THR PRO TYR LYS ARG ASP ILE SEQRES 11 B 443 LEU GLY GLU LEU VAL LYS ALA TYR ASN ASP GLU GLY ILE SEQRES 12 B 443 ASP VAL HIS PHE TYR PHE SER VAL MET ASP TRP SER ASN SEQRES 13 B 443 PRO ASP TYR ARG TYR ASP ILE LYS SER LYS GLU ASP SER SEQRES 14 B 443 ILE ALA PHE SER ARG PHE LEU GLU PHE THR ASP ASN GLN SEQRES 15 B 443 LEU LYS GLU LEU ALA THR ARG TYR PRO THR VAL LYS ASP SEQRES 16 B 443 PHE TRP PHE ASP GLY THR TRP ASP ALA SER VAL LYS LYS SEQRES 17 B 443 ASN GLY TRP TRP THR ALA HIS ALA GLU GLN MET LEU LYS SEQRES 18 B 443 GLU LEU VAL PRO GLY VAL ALA ILE ASN SER ARG LEU ARG SEQRES 19 B 443 ALA ASP ASP LYS GLY LYS ARG HIS PHE ASP SER ASN GLY SEQRES 20 B 443 ARG LEU MET GLY ASP TYR GLU SER GLY TYR GLU ARG ARG SEQRES 21 B 443 LEU PRO ASP PRO VAL LYS ASP LEU LYS VAL THR GLN TRP SEQRES 22 B 443 ASP TRP GLU ALA CYS MET THR ILE PRO GLU ASN GLN TRP SEQRES 23 B 443 GLY TYR HIS LYS ASP TRP SER LEU SER TYR VAL LYS THR SEQRES 24 B 443 PRO ILE GLU VAL ILE ASP ARG ILE VAL HIS ALA VAL SER SEQRES 25 B 443 MET GLY GLY ASN MET VAL VAL ASN PHE GLY PRO GLN ALA SEQRES 26 B 443 ASP GLY ASP PHE ARG PRO GLU GLU LYS ALA MET ALA THR SEQRES 27 B 443 ALA ILE GLY LYS TRP MET ASN ARG TYR GLY LYS ALA VAL SEQRES 28 B 443 TYR ALA CYS ASP TYR ALA GLY PHE GLU LYS GLN ASP TRP SEQRES 29 B 443 GLY TYR TYR THR ARG GLY LYS ASN ASP GLU VAL TYR MET SEQRES 30 B 443 VAL VAL PHE ASN GLN PRO TYR SER GLU ARG LEU ILE VAL SEQRES 31 B 443 LYS THR PRO LYS GLY ILE THR VAL GLU LYS ALA THR LEU SEQRES 32 B 443 LEU THR THR GLY GLU ASP ILE THR VAL VAL GLU THR THR SEQRES 33 B 443 ARG ASN GLU TYR ASN VAL SER VAL PRO LYS LYS ASN PRO SEQRES 34 B 443 GLY GLU PRO TYR VAL ILE GLN LEU LYS VAL ARG ALA ALA SEQRES 35 B 443 LYS SEQRES 1 C 443 GLU ALA LYS LYS GLU ILE PRO LEU LYS TYR GLY ALA THR SEQRES 2 C 443 ASN GLU GLY LYS ARG GLN ASP PRO ALA MET GLN LYS PHE SEQRES 3 C 443 ARG ASP ASN ARG LEU GLY ALA PHE ILE HIS TRP GLY LEU SEQRES 4 C 443 TYR ALA ILE PRO GLY GLY GLU TRP ASN GLY LYS VAL TYR SEQRES 5 C 443 GLY GLY ALA ALA GLU TRP LEU LYS SER TRP ALA LYS VAL SEQRES 6 C 443 PRO ALA ASP GLU TRP LEU LYS LEU MET ASP GLN TRP ASN SEQRES 7 C 443 PRO THR LYS PHE ASP ALA LYS LYS TRP ALA LYS MET ALA SEQRES 8 C 443 LYS GLU MET GLY THR LYS TYR VAL LYS ILE THR THR LYS SEQRES 9 C 443 HIS HIS GLU GLY PHE CYS LEU TRP PRO SER LYS TYR THR SEQRES 10 C 443 LYS TYR THR VAL ALA ASN THR PRO TYR LYS ARG ASP ILE SEQRES 11 C 443 LEU GLY GLU LEU VAL LYS ALA TYR ASN ASP GLU GLY ILE SEQRES 12 C 443 ASP VAL HIS PHE TYR PHE SER VAL MET ASP TRP SER ASN SEQRES 13 C 443 PRO ASP TYR ARG TYR ASP ILE LYS SER LYS GLU ASP SER SEQRES 14 C 443 ILE ALA PHE SER ARG PHE LEU GLU PHE THR ASP ASN GLN SEQRES 15 C 443 LEU LYS GLU LEU ALA THR ARG TYR PRO THR VAL LYS ASP SEQRES 16 C 443 PHE TRP PHE ASP GLY THR TRP ASP ALA SER VAL LYS LYS SEQRES 17 C 443 ASN GLY TRP TRP THR ALA HIS ALA GLU GLN MET LEU LYS SEQRES 18 C 443 GLU LEU VAL PRO GLY VAL ALA ILE ASN SER ARG LEU ARG SEQRES 19 C 443 ALA ASP ASP LYS GLY LYS ARG HIS PHE ASP SER ASN GLY SEQRES 20 C 443 ARG LEU MET GLY ASP TYR GLU SER GLY TYR GLU ARG ARG SEQRES 21 C 443 LEU PRO ASP PRO VAL LYS ASP LEU LYS VAL THR GLN TRP SEQRES 22 C 443 ASP TRP GLU ALA CYS MET THR ILE PRO GLU ASN GLN TRP SEQRES 23 C 443 GLY TYR HIS LYS ASP TRP SER LEU SER TYR VAL LYS THR SEQRES 24 C 443 PRO ILE GLU VAL ILE ASP ARG ILE VAL HIS ALA VAL SER SEQRES 25 C 443 MET GLY GLY ASN MET VAL VAL ASN PHE GLY PRO GLN ALA SEQRES 26 C 443 ASP GLY ASP PHE ARG PRO GLU GLU LYS ALA MET ALA THR SEQRES 27 C 443 ALA ILE GLY LYS TRP MET ASN ARG TYR GLY LYS ALA VAL SEQRES 28 C 443 TYR ALA CYS ASP TYR ALA GLY PHE GLU LYS GLN ASP TRP SEQRES 29 C 443 GLY TYR TYR THR ARG GLY LYS ASN ASP GLU VAL TYR MET SEQRES 30 C 443 VAL VAL PHE ASN GLN PRO TYR SER GLU ARG LEU ILE VAL SEQRES 31 C 443 LYS THR PRO LYS GLY ILE THR VAL GLU LYS ALA THR LEU SEQRES 32 C 443 LEU THR THR GLY GLU ASP ILE THR VAL VAL GLU THR THR SEQRES 33 C 443 ARG ASN GLU TYR ASN VAL SER VAL PRO LYS LYS ASN PRO SEQRES 34 C 443 GLY GLU PRO TYR VAL ILE GLN LEU LYS VAL ARG ALA ALA SEQRES 35 C 443 LYS SEQRES 1 D 443 GLU ALA LYS LYS GLU ILE PRO LEU LYS TYR GLY ALA THR SEQRES 2 D 443 ASN GLU GLY LYS ARG GLN ASP PRO ALA MET GLN LYS PHE SEQRES 3 D 443 ARG ASP ASN ARG LEU GLY ALA PHE ILE HIS TRP GLY LEU SEQRES 4 D 443 TYR ALA ILE PRO GLY GLY GLU TRP ASN GLY LYS VAL TYR SEQRES 5 D 443 GLY GLY ALA ALA GLU TRP LEU LYS SER TRP ALA LYS VAL SEQRES 6 D 443 PRO ALA ASP GLU TRP LEU LYS LEU MET ASP GLN TRP ASN SEQRES 7 D 443 PRO THR LYS PHE ASP ALA LYS LYS TRP ALA LYS MET ALA SEQRES 8 D 443 LYS GLU MET GLY THR LYS TYR VAL LYS ILE THR THR LYS SEQRES 9 D 443 HIS HIS GLU GLY PHE CYS LEU TRP PRO SER LYS TYR THR SEQRES 10 D 443 LYS TYR THR VAL ALA ASN THR PRO TYR LYS ARG ASP ILE SEQRES 11 D 443 LEU GLY GLU LEU VAL LYS ALA TYR ASN ASP GLU GLY ILE SEQRES 12 D 443 ASP VAL HIS PHE TYR PHE SER VAL MET ASP TRP SER ASN SEQRES 13 D 443 PRO ASP TYR ARG TYR ASP ILE LYS SER LYS GLU ASP SER SEQRES 14 D 443 ILE ALA PHE SER ARG PHE LEU GLU PHE THR ASP ASN GLN SEQRES 15 D 443 LEU LYS GLU LEU ALA THR ARG TYR PRO THR VAL LYS ASP SEQRES 16 D 443 PHE TRP PHE ASP GLY THR TRP ASP ALA SER VAL LYS LYS SEQRES 17 D 443 ASN GLY TRP TRP THR ALA HIS ALA GLU GLN MET LEU LYS SEQRES 18 D 443 GLU LEU VAL PRO GLY VAL ALA ILE ASN SER ARG LEU ARG SEQRES 19 D 443 ALA ASP ASP LYS GLY LYS ARG HIS PHE ASP SER ASN GLY SEQRES 20 D 443 ARG LEU MET GLY ASP TYR GLU SER GLY TYR GLU ARG ARG SEQRES 21 D 443 LEU PRO ASP PRO VAL LYS ASP LEU LYS VAL THR GLN TRP SEQRES 22 D 443 ASP TRP GLU ALA CYS MET THR ILE PRO GLU ASN GLN TRP SEQRES 23 D 443 GLY TYR HIS LYS ASP TRP SER LEU SER TYR VAL LYS THR SEQRES 24 D 443 PRO ILE GLU VAL ILE ASP ARG ILE VAL HIS ALA VAL SER SEQRES 25 D 443 MET GLY GLY ASN MET VAL VAL ASN PHE GLY PRO GLN ALA SEQRES 26 D 443 ASP GLY ASP PHE ARG PRO GLU GLU LYS ALA MET ALA THR SEQRES 27 D 443 ALA ILE GLY LYS TRP MET ASN ARG TYR GLY LYS ALA VAL SEQRES 28 D 443 TYR ALA CYS ASP TYR ALA GLY PHE GLU LYS GLN ASP TRP SEQRES 29 D 443 GLY TYR TYR THR ARG GLY LYS ASN ASP GLU VAL TYR MET SEQRES 30 D 443 VAL VAL PHE ASN GLN PRO TYR SER GLU ARG LEU ILE VAL SEQRES 31 D 443 LYS THR PRO LYS GLY ILE THR VAL GLU LYS ALA THR LEU SEQRES 32 D 443 LEU THR THR GLY GLU ASP ILE THR VAL VAL GLU THR THR SEQRES 33 D 443 ARG ASN GLU TYR ASN VAL SER VAL PRO LYS LYS ASN PRO SEQRES 34 D 443 GLY GLU PRO TYR VAL ILE GLN LEU LYS VAL ARG ALA ALA SEQRES 35 D 443 LYS HET SO4 A1472 5 HET JFZ A2001 20 HET SO4 B1472 5 HET JFZ B2001 20 HET SO4 C1472 5 HET SO4 C1473 5 HET JFZ C2001 20 HET SO4 D1472 5 HET SO4 D1473 5 HET SO4 D1474 5 HET JFZ D2001 20 HETNAM SO4 SULFATE ION HETNAM JFZ 4-NITROPHENYL 6-DEOXY-ALPHA-L-GALACTOPYRANOSIDE FORMUL 5 SO4 7(O4 S 2-) FORMUL 6 JFZ 4(C12 H15 N O7) FORMUL 16 HOH *1394(H2 O) HELIX 1 1 ASP A 50 ARG A 60 1 11 HELIX 2 2 GLY A 68 ILE A 72 5 5 HELIX 3 3 ALA A 85 GLU A 87 5 3 HELIX 4 4 TRP A 88 ALA A 93 1 6 HELIX 5 5 PRO A 96 LYS A 102 1 7 HELIX 6 6 LEU A 103 TRP A 107 5 5 HELIX 7 7 ASP A 113 GLY A 125 1 13 HELIX 8 8 VAL A 151 THR A 154 5 4 HELIX 9 9 ASP A 159 GLU A 171 1 13 HELIX 10 10 SER A 195 TYR A 220 1 26 HELIX 11 11 ASP A 233 LYS A 238 1 6 HELIX 12 12 ASN A 239 VAL A 254 1 16 HELIX 13 13 SER A 261 ARG A 264 5 4 HELIX 14 14 ASP A 297 TRP A 303 5 7 HELIX 15 15 ASP A 321 SER A 325 5 5 HELIX 16 16 THR A 329 MET A 343 1 15 HELIX 17 17 ARG A 360 GLY A 378 1 19 HELIX 18 18 LYS A 379 VAL A 381 5 3 HELIX 19 19 ASP B 50 ARG B 60 1 11 HELIX 20 20 GLY B 68 ILE B 72 5 5 HELIX 21 21 ALA B 85 GLU B 87 5 3 HELIX 22 22 TRP B 88 ALA B 93 1 6 HELIX 23 23 PRO B 96 LYS B 102 1 7 HELIX 24 24 LEU B 103 TRP B 107 5 5 HELIX 25 25 ASP B 113 GLY B 125 1 13 HELIX 26 26 VAL B 151 THR B 154 5 4 HELIX 27 27 ASP B 159 GLU B 171 1 13 HELIX 28 28 SER B 195 TYR B 220 1 26 HELIX 29 29 ASP B 233 LYS B 238 1 6 HELIX 30 30 ASN B 239 VAL B 254 1 16 HELIX 31 31 SER B 261 ARG B 264 5 4 HELIX 32 32 ASP B 297 TRP B 303 5 7 HELIX 33 33 ASP B 321 SER B 325 5 5 HELIX 34 34 THR B 329 MET B 343 1 15 HELIX 35 35 ARG B 360 GLY B 378 1 19 HELIX 36 36 LYS B 379 VAL B 381 5 3 HELIX 37 37 ASP C 50 ARG C 60 1 11 HELIX 38 38 GLY C 68 ILE C 72 5 5 HELIX 39 39 ALA C 85 GLU C 87 5 3 HELIX 40 40 TRP C 88 ALA C 93 1 6 HELIX 41 41 PRO C 96 LYS C 102 1 7 HELIX 42 42 LEU C 103 TRP C 107 5 5 HELIX 43 43 ASP C 113 GLY C 125 1 13 HELIX 44 44 VAL C 151 THR C 154 5 4 HELIX 45 45 ASP C 159 GLU C 171 1 13 HELIX 46 46 SER C 195 TYR C 220 1 26 HELIX 47 47 ASP C 233 LYS C 238 1 6 HELIX 48 48 ASN C 239 VAL C 254 1 16 HELIX 49 49 SER C 261 ARG C 264 5 4 HELIX 50 50 ASP C 297 TRP C 303 5 7 HELIX 51 51 ASP C 321 SER C 325 5 5 HELIX 52 52 THR C 329 MET C 343 1 15 HELIX 53 53 ARG C 360 GLY C 378 1 19 HELIX 54 54 LYS C 379 VAL C 381 5 3 HELIX 55 55 ASP D 50 ARG D 60 1 11 HELIX 56 56 GLY D 68 ILE D 72 5 5 HELIX 57 57 ALA D 85 GLU D 87 5 3 HELIX 58 58 TRP D 88 ALA D 93 1 6 HELIX 59 59 PRO D 96 LYS D 102 1 7 HELIX 60 60 LEU D 103 TRP D 107 5 5 HELIX 61 61 ASP D 113 GLY D 125 1 13 HELIX 62 62 VAL D 151 THR D 154 5 4 HELIX 63 63 ASP D 159 GLU D 171 1 13 HELIX 64 64 SER D 195 TYR D 220 1 26 HELIX 65 65 ASP D 233 LYS D 238 1 6 HELIX 66 66 ASN D 239 VAL D 254 1 16 HELIX 67 67 SER D 261 ARG D 264 5 4 HELIX 68 68 ASP D 297 TRP D 303 5 7 HELIX 69 69 ASP D 321 SER D 325 5 5 HELIX 70 70 THR D 329 MET D 343 1 15 HELIX 71 71 ARG D 360 GLY D 378 1 19 HELIX 72 72 LYS D 379 VAL D 381 5 3 SHEET 1 AA 8 ALA A 258 ILE A 259 0 SHEET 2 AA 8 ASP A 225 ASP A 229 1 N PHE A 226 O ALA A 258 SHEET 3 AA 8 ASP A 174 SER A 180 1 O PHE A 177 N TRP A 227 SHEET 4 AA 8 TYR A 128 LYS A 134 1 O VAL A 129 N HIS A 176 SHEET 5 AA 8 LEU A 61 ILE A 65 1 O ALA A 63 N LYS A 130 SHEET 6 AA 8 ASN A 346 PHE A 351 1 O MET A 347 N GLY A 62 SHEET 7 AA 8 TRP A 305 MET A 309 1 O TRP A 305 N ASN A 346 SHEET 8 AA 8 GLU A 284 GLY A 286 1 O GLU A 284 N GLU A 306 SHEET 1 AB 2 GLU A 76 TRP A 77 0 SHEET 2 AB 2 LYS A 80 VAL A 81 -1 O LYS A 80 N TRP A 77 SHEET 1 AC 4 GLY A 395 ARG A 399 0 SHEET 2 AC 4 VAL A 405 VAL A 409 -1 O TYR A 406 N THR A 398 SHEET 3 AC 4 TYR A 463 ARG A 470 -1 O TYR A 463 N VAL A 409 SHEET 4 AC 4 THR A 427 LEU A 433 -1 O THR A 427 N ARG A 470 SHEET 1 AD 3 ARG A 417 LYS A 421 0 SHEET 2 AD 3 GLU A 449 SER A 453 -1 O TYR A 450 N VAL A 420 SHEET 3 AD 3 VAL A 442 THR A 446 -1 O VAL A 443 N ASN A 451 SHEET 1 BA 8 ALA B 258 ILE B 259 0 SHEET 2 BA 8 ASP B 225 ASP B 229 1 N PHE B 226 O ALA B 258 SHEET 3 BA 8 ASP B 174 SER B 180 1 O PHE B 177 N TRP B 227 SHEET 4 BA 8 TYR B 128 THR B 132 1 O VAL B 129 N HIS B 176 SHEET 5 BA 8 LEU B 61 ILE B 65 1 O ALA B 63 N LYS B 130 SHEET 6 BA 8 GLY B 345 PHE B 351 1 O MET B 347 N GLY B 62 SHEET 7 BA 8 TRP B 305 MET B 309 1 O TRP B 305 N ASN B 346 SHEET 8 BA 8 GLU B 284 GLY B 286 1 O GLU B 284 N GLU B 306 SHEET 1 BB 2 GLU B 76 TRP B 77 0 SHEET 2 BB 2 LYS B 80 VAL B 81 -1 O LYS B 80 N TRP B 77 SHEET 1 BC 5 GLY B 395 ARG B 399 0 SHEET 2 BC 5 GLU B 404 VAL B 409 -1 O TYR B 406 N THR B 398 SHEET 3 BC 5 TYR B 463 ARG B 470 -1 O TYR B 463 N VAL B 409 SHEET 4 BC 5 THR B 427 LEU B 433 -1 O THR B 427 N ARG B 470 SHEET 5 BC 5 ASP B 439 ILE B 440 -1 O ILE B 440 N ALA B 431 SHEET 1 BD 3 ARG B 417 LYS B 421 0 SHEET 2 BD 3 GLU B 449 SER B 453 -1 O TYR B 450 N VAL B 420 SHEET 3 BD 3 VAL B 442 THR B 446 -1 O VAL B 443 N ASN B 451 SHEET 1 CA 8 ALA C 258 ILE C 259 0 SHEET 2 CA 8 ASP C 225 ASP C 229 1 N PHE C 226 O ALA C 258 SHEET 3 CA 8 ASP C 174 SER C 180 1 O PHE C 177 N TRP C 227 SHEET 4 CA 8 TYR C 128 LYS C 134 1 O VAL C 129 N HIS C 176 SHEET 5 CA 8 LEU C 61 ILE C 65 1 O ALA C 63 N LYS C 130 SHEET 6 CA 8 ASN C 346 PHE C 351 1 O MET C 347 N GLY C 62 SHEET 7 CA 8 TRP C 305 MET C 309 1 O TRP C 305 N ASN C 346 SHEET 8 CA 8 GLU C 284 SER C 285 1 O GLU C 284 N GLU C 306 SHEET 1 CB 2 GLU C 76 TRP C 77 0 SHEET 2 CB 2 LYS C 80 VAL C 81 -1 O LYS C 80 N TRP C 77 SHEET 1 CC 4 GLY C 395 ARG C 399 0 SHEET 2 CC 4 VAL C 405 VAL C 409 -1 O TYR C 406 N THR C 398 SHEET 3 CC 4 TYR C 463 ARG C 470 -1 O TYR C 463 N VAL C 409 SHEET 4 CC 4 THR C 427 LEU C 433 -1 O THR C 427 N ARG C 470 SHEET 1 CD 3 ARG C 417 LYS C 421 0 SHEET 2 CD 3 GLU C 449 SER C 453 -1 O TYR C 450 N VAL C 420 SHEET 3 CD 3 VAL C 442 THR C 446 -1 O VAL C 443 N ASN C 451 SHEET 1 DA 8 ALA D 258 ILE D 259 0 SHEET 2 DA 8 ASP D 225 ASP D 229 1 N PHE D 226 O ALA D 258 SHEET 3 DA 8 ASP D 174 SER D 180 1 O PHE D 177 N TRP D 227 SHEET 4 DA 8 TYR D 128 LYS D 134 1 O VAL D 129 N HIS D 176 SHEET 5 DA 8 LEU D 61 ILE D 65 1 O ALA D 63 N LYS D 130 SHEET 6 DA 8 GLY D 345 PHE D 351 1 O MET D 347 N GLY D 62 SHEET 7 DA 8 TRP D 305 MET D 309 1 O TRP D 305 N ASN D 346 SHEET 8 DA 8 GLU D 284 SER D 285 1 O GLU D 284 N GLU D 306 SHEET 1 DB 2 GLU D 76 TRP D 77 0 SHEET 2 DB 2 LYS D 80 VAL D 81 -1 O LYS D 80 N TRP D 77 SHEET 1 DC 4 GLY D 395 ARG D 399 0 SHEET 2 DC 4 VAL D 405 VAL D 409 -1 O TYR D 406 N THR D 398 SHEET 3 DC 4 TYR D 463 ARG D 470 -1 O TYR D 463 N VAL D 409 SHEET 4 DC 4 THR D 427 LEU D 433 -1 O THR D 427 N ARG D 470 SHEET 1 DD 3 ARG D 417 LYS D 421 0 SHEET 2 DD 3 GLU D 449 SER D 453 -1 O TYR D 450 N VAL D 420 SHEET 3 DD 3 VAL D 442 THR D 446 -1 O VAL D 443 N ASN D 451 CISPEP 1 SER A 285 GLY A 286 0 -5.98 CRYST1 54.610 184.820 98.060 90.00 94.63 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018312 0.000000 0.001483 0.00000 SCALE2 0.000000 0.005411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010231 0.00000