HEADER TRANSFERASE 21-OCT-09 2WW4 TITLE A TRICLINIC CRYSTAL FORM OF E. COLI 4-DIPHOSPHOCYTIDYL-2C-METHYL-D- TITLE 2 ERYTHRITOL KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CMK, 4-(CYTIDINE-5'-DIPHOSPHO)-2-C-METHYL-D-ERYTHRITOL COMPND 5 KINASE; COMPND 6 EC: 2.7.1.148; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS NON-MEVALONATE PATHWAY, ISOPRENOID BIOSYNTHESIS, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KALINOWSKA-TLUSCIK,L.MIALLAU,M.GABRIELSEN,G.A.LEONARD, AUTHOR 2 S.M.MCSWEENEY,W.N.HUNTER REVDAT 3 20-DEC-23 2WW4 1 REMARK REVDAT 2 04-APR-12 2WW4 1 COMPND JRNL REMARK VERSN REVDAT 2 2 1 DBREF REVDAT 1 09-MAR-10 2WW4 0 JRNL AUTH J.KALINOWSKA-TLUSCIK,L.MIALLAU,M.GABRIELSEN,G.A.LEONARD, JRNL AUTH 2 S.M.MCSWEENEY,W.N.HUNTER JRNL TITL A TRICLINIC CRYSTAL FORM OF ESCHERICHIA COLI JRNL TITL 2 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL KINASE AND JRNL TITL 3 REASSESSMENT OF THE QUATERNARY STRUCTURE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 237 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20208151 JRNL DOI 10.1107/S1744309109054591 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0094 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 31885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1693 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2351 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.260 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4607 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3122 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6283 ; 1.328 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7622 ; 1.301 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 575 ; 6.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;35.044 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 761 ;14.882 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.242 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 709 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5082 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 933 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2830 ; 0.610 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1148 ; 0.130 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4576 ; 1.106 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1777 ; 1.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1701 ; 2.509 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2WW4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31885 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OJ4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 283 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 100 O REMARK 470 TRP A 264 O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 61 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 36 O HOH A 2030 2.03 REMARK 500 OG1 THR A 201 O HOH A 2156 2.04 REMARK 500 O2B ADP A 1284 O HOH A 2214 2.06 REMARK 500 OE1 GLU B 167 O HOH B 2134 2.10 REMARK 500 O HOH B 2063 O HOH B 2065 2.14 REMARK 500 CG1 VAL B 213 O HOH B 2161 2.14 REMARK 500 O HOH B 2016 O HOH B 2039 2.17 REMARK 500 NH1 ARG B 83 O HOH B 2076 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 61 CA - CB - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 ILE B 67 CG1 - CB - CG2 ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 37 138.65 -173.92 REMARK 500 GLU A 58 111.88 -39.43 REMARK 500 GLU A 154 -151.30 -142.83 REMARK 500 ASN A 193 22.85 -142.97 REMARK 500 TYR B 37 131.87 -171.83 REMARK 500 GLU B 154 -151.71 -144.56 REMARK 500 ARG B 192 27.89 -141.84 REMARK 500 ASN B 193 28.16 -148.00 REMARK 500 ASN B 266 55.77 37.27 REMARK 500 LEU B 278 -73.64 -50.13 REMARK 500 ALA B 281 47.32 -71.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2064 DISTANCE = 6.01 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1284 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CORRECT CODE FOR THE SEQUENCE DATA IS GENBANK AAF29530.1 DBREF 2WW4 A 1 283 UNP B7LXC3 ISPE_ECO8A 1 283 DBREF 2WW4 B 1 283 UNP B7LXC3 ISPE_ECO8A 1 283 SEQRES 1 A 283 MET ARG THR GLN TRP PRO SER PRO ALA LYS LEU ASN LEU SEQRES 2 A 283 PHE LEU TYR ILE THR GLY GLN ARG ALA ASP GLY TYR HIS SEQRES 3 A 283 THR LEU GLN THR LEU PHE GLN PHE LEU ASP TYR GLY ASP SEQRES 4 A 283 THR ILE SER ILE GLU LEU ARG ASP ASP GLY ASP ILE ARG SEQRES 5 A 283 LEU LEU THR PRO VAL GLU GLY VAL GLU HIS GLU ASP ASN SEQRES 6 A 283 LEU ILE VAL ARG ALA ALA ARG LEU LEU MET LYS THR ALA SEQRES 7 A 283 ALA ASP SER GLY ARG LEU PRO THR GLY SER GLY ALA ASN SEQRES 8 A 283 ILE SER ILE ASP LYS ARG LEU PRO MET GLY GLY GLY LEU SEQRES 9 A 283 GLY GLY GLY SER SER ASN ALA ALA THR VAL LEU VAL ALA SEQRES 10 A 283 LEU ASN HIS LEU TRP GLN CYS GLY LEU SER MET ASP GLU SEQRES 11 A 283 LEU ALA GLU MET GLY LEU THR LEU GLY ALA ASP VAL PRO SEQRES 12 A 283 VAL PHE VAL ARG GLY HIS ALA ALA PHE ALA GLU GLY VAL SEQRES 13 A 283 GLY GLU ILE LEU THR PRO VAL ASP PRO PRO GLU LYS TRP SEQRES 14 A 283 TYR LEU VAL ALA HIS PRO GLY VAL SER ILE PRO THR PRO SEQRES 15 A 283 VAL ILE PHE LYS ASP PRO GLU LEU PRO ARG ASN THR PRO SEQRES 16 A 283 LYS ARG SER ILE GLU THR LEU LEU LYS CYS GLU PHE SER SEQRES 17 A 283 ASN ASP CYS GLU VAL ILE ALA ARG LYS ARG PHE ARG GLU SEQRES 18 A 283 VAL ASP ALA VAL LEU SER TRP LEU LEU GLU TYR ALA PRO SEQRES 19 A 283 SER ARG LEU THR GLY THR GLY ALA CYS VAL PHE ALA GLU SEQRES 20 A 283 PHE ASP THR GLU SER GLU ALA ARG GLN VAL LEU GLU GLN SEQRES 21 A 283 ALA PRO GLU TRP LEU ASN GLY PHE VAL ALA LYS GLY VAL SEQRES 22 A 283 ASN LEU SER PRO LEU HIS ARG ALA MET LEU SEQRES 1 B 283 MET ARG THR GLN TRP PRO SER PRO ALA LYS LEU ASN LEU SEQRES 2 B 283 PHE LEU TYR ILE THR GLY GLN ARG ALA ASP GLY TYR HIS SEQRES 3 B 283 THR LEU GLN THR LEU PHE GLN PHE LEU ASP TYR GLY ASP SEQRES 4 B 283 THR ILE SER ILE GLU LEU ARG ASP ASP GLY ASP ILE ARG SEQRES 5 B 283 LEU LEU THR PRO VAL GLU GLY VAL GLU HIS GLU ASP ASN SEQRES 6 B 283 LEU ILE VAL ARG ALA ALA ARG LEU LEU MET LYS THR ALA SEQRES 7 B 283 ALA ASP SER GLY ARG LEU PRO THR GLY SER GLY ALA ASN SEQRES 8 B 283 ILE SER ILE ASP LYS ARG LEU PRO MET GLY GLY GLY LEU SEQRES 9 B 283 GLY GLY GLY SER SER ASN ALA ALA THR VAL LEU VAL ALA SEQRES 10 B 283 LEU ASN HIS LEU TRP GLN CYS GLY LEU SER MET ASP GLU SEQRES 11 B 283 LEU ALA GLU MET GLY LEU THR LEU GLY ALA ASP VAL PRO SEQRES 12 B 283 VAL PHE VAL ARG GLY HIS ALA ALA PHE ALA GLU GLY VAL SEQRES 13 B 283 GLY GLU ILE LEU THR PRO VAL ASP PRO PRO GLU LYS TRP SEQRES 14 B 283 TYR LEU VAL ALA HIS PRO GLY VAL SER ILE PRO THR PRO SEQRES 15 B 283 VAL ILE PHE LYS ASP PRO GLU LEU PRO ARG ASN THR PRO SEQRES 16 B 283 LYS ARG SER ILE GLU THR LEU LEU LYS CYS GLU PHE SER SEQRES 17 B 283 ASN ASP CYS GLU VAL ILE ALA ARG LYS ARG PHE ARG GLU SEQRES 18 B 283 VAL ASP ALA VAL LEU SER TRP LEU LEU GLU TYR ALA PRO SEQRES 19 B 283 SER ARG LEU THR GLY THR GLY ALA CYS VAL PHE ALA GLU SEQRES 20 B 283 PHE ASP THR GLU SER GLU ALA ARG GLN VAL LEU GLU GLN SEQRES 21 B 283 ALA PRO GLU TRP LEU ASN GLY PHE VAL ALA LYS GLY VAL SEQRES 22 B 283 ASN LEU SER PRO LEU HIS ARG ALA MET LEU HET ADP A1284 27 HET ADP B1283 27 HET GOL B1284 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *422(H2 O) HELIX 1 1 GLU A 61 ASP A 64 5 4 HELIX 2 2 ASN A 65 SER A 81 1 17 HELIX 3 3 GLY A 105 TRP A 122 1 18 HELIX 4 4 SER A 127 THR A 137 1 11 HELIX 5 5 ASP A 141 GLY A 148 1 8 HELIX 6 6 PRO A 180 LYS A 186 1 7 HELIX 7 7 SER A 198 LYS A 204 1 7 HELIX 8 8 CYS A 211 PHE A 219 1 9 HELIX 9 9 PHE A 219 GLU A 231 1 13 HELIX 10 10 THR A 250 ALA A 261 1 12 HELIX 11 11 SER A 276 MET A 282 1 7 HELIX 12 12 GLU B 61 ASP B 64 5 4 HELIX 13 13 ASN B 65 ASP B 80 1 16 HELIX 14 14 GLY B 105 TRP B 122 1 18 HELIX 15 15 SER B 127 THR B 137 1 11 HELIX 16 16 ASP B 141 GLY B 148 1 8 HELIX 17 17 PRO B 180 LYS B 186 1 7 HELIX 18 18 SER B 198 CYS B 205 1 8 HELIX 19 19 CYS B 211 PHE B 219 1 9 HELIX 20 20 PHE B 219 GLU B 231 1 13 HELIX 21 21 THR B 250 ALA B 261 1 12 HELIX 22 22 PRO B 262 ASN B 266 5 5 HELIX 23 23 SER B 276 ALA B 281 1 6 SHEET 1 AA 2 ARG A 2 GLN A 20 0 SHEET 2 AA 2 HIS A 26 ARG A 46 -1 O THR A 27 N THR A 18 SHEET 1 AB 7 ILE A 51 LEU A 53 0 SHEET 2 AB 7 GLY A 89 ASP A 95 -1 O ALA A 90 N ARG A 52 SHEET 3 AB 7 HIS A 26 ARG A 46 1 O THR A 40 N ASP A 95 SHEET 4 AB 7 GLY A 267 VAL A 273 -1 O LYS A 271 N ASP A 36 SHEET 5 AB 7 TRP A 169 ALA A 173 -1 O TYR A 170 N ALA A 270 SHEET 6 AB 7 VAL A 244 PHE A 248 -1 O VAL A 244 N ALA A 173 SHEET 7 AB 7 SER A 235 LEU A 237 -1 O ARG A 236 N PHE A 245 SHEET 1 AC 5 ILE A 51 LEU A 53 0 SHEET 2 AC 5 GLY A 89 ASP A 95 -1 O ALA A 90 N ARG A 52 SHEET 3 AC 5 HIS A 26 ARG A 46 1 O THR A 40 N ASP A 95 SHEET 4 AC 5 ALA A 151 GLU A 154 1 O ALA A 151 N PHE A 32 SHEET 5 AC 5 ILE A 159 PRO A 162 1 O ILE A 159 N GLU A 154 SHEET 1 AD 4 ILE A 51 LEU A 53 0 SHEET 2 AD 4 GLY A 89 ASP A 95 -1 O ALA A 90 N ARG A 52 SHEET 3 AD 4 HIS A 26 ARG A 46 1 O THR A 40 N ASP A 95 SHEET 4 AD 4 ARG A 2 GLN A 20 -1 O THR A 3 N ILE A 43 SHEET 1 BA 2 ARG B 2 GLN B 20 0 SHEET 2 BA 2 HIS B 26 ARG B 46 -1 O THR B 27 N THR B 18 SHEET 1 BB 7 ILE B 51 LEU B 53 0 SHEET 2 BB 7 GLY B 89 ASP B 95 -1 O ALA B 90 N ARG B 52 SHEET 3 BB 7 HIS B 26 ARG B 46 1 O THR B 40 N ASP B 95 SHEET 4 BB 7 PHE B 268 VAL B 273 -1 O LYS B 271 N ASP B 36 SHEET 5 BB 7 TRP B 169 ALA B 173 -1 O TYR B 170 N ALA B 270 SHEET 6 BB 7 VAL B 244 PHE B 248 -1 O VAL B 244 N ALA B 173 SHEET 7 BB 7 SER B 235 LEU B 237 -1 O ARG B 236 N PHE B 245 SHEET 1 BC 5 ILE B 51 LEU B 53 0 SHEET 2 BC 5 GLY B 89 ASP B 95 -1 O ALA B 90 N ARG B 52 SHEET 3 BC 5 HIS B 26 ARG B 46 1 O THR B 40 N ASP B 95 SHEET 4 BC 5 ALA B 151 GLU B 154 1 O ALA B 151 N PHE B 32 SHEET 5 BC 5 ILE B 159 PRO B 162 1 O ILE B 159 N GLU B 154 SHEET 1 BD 4 ILE B 51 LEU B 53 0 SHEET 2 BD 4 GLY B 89 ASP B 95 -1 O ALA B 90 N ARG B 52 SHEET 3 BD 4 HIS B 26 ARG B 46 1 O THR B 40 N ASP B 95 SHEET 4 BD 4 ARG B 2 GLN B 20 -1 O THR B 3 N ILE B 43 CISPEP 1 GLY A 241 ALA A 242 0 1.85 CISPEP 2 GLY B 241 ALA B 242 0 3.48 SITE 1 AC1 13 ALA A 22 VAL B 60 ASN B 65 LEU B 66 SITE 2 AC1 13 ILE B 67 LYS B 96 GLY B 101 GLY B 105 SITE 3 AC1 13 GLY B 107 SER B 108 ASN B 110 HOH B2207 SITE 4 AC1 13 HOH B2208 SITE 1 AC2 14 ASN A 65 LEU A 66 LYS A 96 MET A 100 SITE 2 AC2 14 GLY A 101 GLY A 105 GLY A 106 GLY A 107 SITE 3 AC2 14 SER A 108 ASN A 110 HOH A2087 HOH A2212 SITE 4 AC2 14 HOH A2213 HOH A2214 SITE 1 AC3 4 ASP B 50 ILE B 51 HIS B 62 ARG B 72 CRYST1 49.051 50.124 66.035 88.77 69.65 65.14 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020387 -0.009446 -0.009044 0.00000 SCALE2 0.000000 0.021988 0.003259 0.00000 SCALE3 0.000000 0.000000 0.016328 0.00000