HEADER OXIDOREDUCTASE 23-OCT-09 2WWJ TITLE STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR 10A COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 7-353; COMPND 5 SYNONYM: JUMONJI DOMAIN CONTAINING PROTEIN 2A, JMJC DOMAIN-CONTAINING COMPND 6 HISTONE DEMETHYLATION PROTEIN 3A; COMPND 7 EC: 1.14.11.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PNIC28BSA4 KEYWDS CHROMATIN REGULATOR, DOUBLE-STRANDED BETA HELIX, OXIDOREDUCTASE, KEYWDS 2 TRANSCRIPTION, OXYGENASE, HOST-VIRUS INTERACTION, TRANSCRIPTION KEYWDS 3 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR N.R.ROSE,I.J.CLIFTON,U.OPPERMANN,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 3 20-DEC-23 2WWJ 1 REMARK LINK REVDAT 2 07-MAR-18 2WWJ 1 SOURCE AUTHOR JRNL REVDAT 1 09-MAR-10 2WWJ 0 JRNL AUTH N.R.ROSE,E.C.WOON,G.L.KINGHAM,O.N.KING,J.MECINOVIC, JRNL AUTH 2 I.J.CLIFTON,S.S.NG,J.TALIB-HARDY,U.OPPERMANN,M.A.MCDONOUGH, JRNL AUTH 3 C.J.SCHOFIELD JRNL TITL SELECTIVE INHIBITORS OF THE JMJD2 HISTONE DEMETHYLASES: JRNL TITL 2 COMBINED NONDENATURING MASS SPECTROMETRIC SCREENING AND JRNL TITL 3 CRYSTALLOGRAPHIC APPROACHES. JRNL REF J. MED. CHEM. V. 53 1810 2010 JRNL REFN ISSN 1520-4804 JRNL PMID 20088513 JRNL DOI 10.1021/JM901680B REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1874 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5697 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.726 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.504 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5944 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8036 ; 1.649 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 695 ; 6.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 287 ;33.143 ;23.171 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 999 ;18.486 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;19.524 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 816 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4603 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1504 ; 0.746 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2435 ; 1.489 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1049 ; 2.561 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1022 ; 4.097 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): -42.1840 -26.4630 -32.5840 REMARK 3 T TENSOR REMARK 3 T11: 0.0709 T22: 0.1225 REMARK 3 T33: 0.1295 T12: 0.0052 REMARK 3 T13: -0.0465 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 3.0158 L22: 2.0563 REMARK 3 L33: 2.8023 L12: -0.6387 REMARK 3 L13: -0.1386 L23: 0.8457 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.3056 S13: -0.0432 REMARK 3 S21: -0.3007 S22: 0.0059 S23: 0.1709 REMARK 3 S31: 0.0493 S32: -0.1784 S33: -0.0443 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -14.3730 -23.4220 -27.7920 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.1411 REMARK 3 T33: 0.0971 T12: 0.0176 REMARK 3 T13: 0.0385 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.9907 L22: 1.4762 REMARK 3 L33: 1.7979 L12: -0.0307 REMARK 3 L13: 0.1726 L23: -0.9649 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: 0.3415 S13: 0.0166 REMARK 3 S21: -0.2780 S22: -0.0896 S23: -0.1140 REMARK 3 S31: 0.0266 S32: 0.1846 S33: 0.0450 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): -29.3240 -22.3240 -21.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.0308 T22: 0.0561 REMARK 3 T33: 0.0451 T12: -0.0145 REMARK 3 T13: -0.0087 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.4109 L22: 1.0382 REMARK 3 L33: 0.7467 L12: -0.3637 REMARK 3 L13: -0.0786 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.0819 S13: 0.0477 REMARK 3 S21: -0.0685 S22: -0.0245 S23: 0.0156 REMARK 3 S31: -0.0348 S32: -0.0114 S33: 0.0072 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 307 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): -24.6580 -11.2450 -6.4730 REMARK 3 T TENSOR REMARK 3 T11: 1.5132 T22: 0.9103 REMARK 3 T33: 0.7353 T12: -0.2342 REMARK 3 T13: 0.4205 T23: 0.4770 REMARK 3 L TENSOR REMARK 3 L11: 11.5649 L22: 35.6611 REMARK 3 L33: 9.5175 L12: 15.9647 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.3815 S12: 1.2275 S13: 1.5759 REMARK 3 S21: -0.9700 S22: 0.3229 S23: -0.4528 REMARK 3 S31: -0.3055 S32: -0.5784 S33: -0.7045 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 312 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): -41.3260 -7.6240 -12.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.1010 REMARK 3 T33: 0.1267 T12: 0.0263 REMARK 3 T13: -0.0179 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 11.1852 L22: 2.6721 REMARK 3 L33: 4.9440 L12: 2.6074 REMARK 3 L13: -0.7986 L23: 1.0578 REMARK 3 S TENSOR REMARK 3 S11: -0.1903 S12: -0.4139 S13: 0.4729 REMARK 3 S21: 0.1709 S22: 0.0963 S23: -0.0336 REMARK 3 S31: -0.2243 S32: -0.0729 S33: 0.0941 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 323 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): -51.3830 -16.2130 -13.3850 REMARK 3 T TENSOR REMARK 3 T11: 0.0225 T22: 0.1399 REMARK 3 T33: 0.1573 T12: -0.0006 REMARK 3 T13: 0.0106 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.3655 L22: 4.8375 REMARK 3 L33: 1.6132 L12: -0.7946 REMARK 3 L13: -0.9950 L23: 1.0776 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: -0.0826 S13: -0.1161 REMARK 3 S21: 0.1535 S22: -0.0173 S23: 0.2182 REMARK 3 S31: 0.1047 S32: -0.1759 S33: 0.0787 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 109 REMARK 3 ORIGIN FOR THE GROUP (A): -42.2490 -54.5040 -4.7330 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.0808 REMARK 3 T33: 0.0788 T12: 0.0013 REMARK 3 T13: -0.0166 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.4495 L22: 0.9897 REMARK 3 L33: 1.1263 L12: 0.2476 REMARK 3 L13: -0.2571 L23: 0.1339 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: 0.2450 S13: -0.1589 REMARK 3 S21: -0.1858 S22: 0.0247 S23: -0.0106 REMARK 3 S31: 0.1196 S32: -0.0840 S33: 0.0285 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 110 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): -46.8500 -52.5160 -4.1580 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1848 REMARK 3 T33: 0.0614 T12: -0.0339 REMARK 3 T13: -0.0596 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 3.6289 L22: 3.2404 REMARK 3 L33: 1.8023 L12: -1.3974 REMARK 3 L13: -1.3647 L23: 0.9020 REMARK 3 S TENSOR REMARK 3 S11: 0.1260 S12: 0.2729 S13: 0.0228 REMARK 3 S21: -0.3665 S22: -0.1217 S23: 0.0281 REMARK 3 S31: -0.0629 S32: -0.0881 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 154 B 163 REMARK 3 ORIGIN FOR THE GROUP (A): -27.7530 -71.4660 2.7460 REMARK 3 T TENSOR REMARK 3 T11: 0.5845 T22: 0.0453 REMARK 3 T33: 0.2087 T12: 0.0652 REMARK 3 T13: -0.1757 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 16.0708 L22: 15.7009 REMARK 3 L33: 8.2728 L12: 5.1037 REMARK 3 L13: -6.8681 L23: -1.9882 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: 0.2800 S13: -1.5236 REMARK 3 S21: -0.5834 S22: -0.0934 S23: -0.2042 REMARK 3 S31: 1.6991 S32: 0.0427 S33: 0.1806 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 164 B 220 REMARK 3 ORIGIN FOR THE GROUP (A): -40.0960 -54.8670 2.7380 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.0555 REMARK 3 T33: 0.0555 T12: -0.0092 REMARK 3 T13: 0.0167 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.6417 L22: 0.9159 REMARK 3 L33: 2.4226 L12: -0.3445 REMARK 3 L13: 1.1333 L23: 0.1938 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: -0.0896 S13: -0.2189 REMARK 3 S21: 0.0622 S22: 0.0211 S23: -0.0426 REMARK 3 S31: 0.2368 S32: 0.0936 S33: -0.0284 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 221 B 235 REMARK 3 ORIGIN FOR THE GROUP (A): -41.7500 -46.5690 22.1830 REMARK 3 T TENSOR REMARK 3 T11: 0.0311 T22: 0.0932 REMARK 3 T33: 0.0453 T12: 0.0035 REMARK 3 T13: -0.0256 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 8.4258 L22: 20.2434 REMARK 3 L33: 15.3084 L12: 2.0761 REMARK 3 L13: -1.4727 L23: -6.4144 REMARK 3 S TENSOR REMARK 3 S11: 0.1520 S12: -0.4130 S13: -0.1066 REMARK 3 S21: 0.4280 S22: -0.2153 S23: -0.6147 REMARK 3 S31: -0.2729 S32: 0.6797 S33: 0.0633 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 236 B 306 REMARK 3 ORIGIN FOR THE GROUP (A): -37.2060 -50.9060 5.2070 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0750 REMARK 3 T33: 0.0875 T12: -0.0137 REMARK 3 T13: 0.0031 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.9759 L22: 0.9158 REMARK 3 L33: 1.2694 L12: 0.0318 REMARK 3 L13: 0.1844 L23: -0.0124 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0670 S13: -0.0149 REMARK 3 S21: 0.0269 S22: 0.0108 S23: -0.0734 REMARK 3 S31: 0.0398 S32: 0.0399 S33: -0.0164 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 307 B 311 REMARK 3 ORIGIN FOR THE GROUP (A): -43.8960 -63.5440 20.3120 REMARK 3 T TENSOR REMARK 3 T11: 0.8905 T22: 0.3985 REMARK 3 T33: 0.9790 T12: 0.0754 REMARK 3 T13: -0.0132 T23: -0.3744 REMARK 3 L TENSOR REMARK 3 L11: 2.7191 L22: 10.6033 REMARK 3 L33: 4.8038 L12: 3.9785 REMARK 3 L13: -0.4321 L23: -5.3624 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: 0.8025 S13: -1.1467 REMARK 3 S21: -1.2013 S22: 0.6552 S23: -0.6884 REMARK 3 S31: 1.3105 S32: 0.4239 S33: -0.6593 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 312 B 353 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0860 -62.0920 12.1240 REMARK 3 T TENSOR REMARK 3 T11: 0.0720 T22: 0.1025 REMARK 3 T33: 0.1388 T12: 0.0141 REMARK 3 T13: -0.0073 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.9370 L22: 2.4082 REMARK 3 L33: 1.1793 L12: -0.7238 REMARK 3 L13: 1.0234 L23: -0.7782 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: -0.1500 S13: -0.0407 REMARK 3 S21: 0.1479 S22: -0.0437 S23: -0.2241 REMARK 3 S31: 0.0044 S32: 0.1386 S33: 0.0678 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS REMARK 4 REMARK 4 2WWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97860 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.640 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 2OQ6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN STOCK 11MG/ML JMJD2A, 10MM REMARK 280 HEPES PH7.5, 500MM NACL, 5% GLYCEROL, 0.75MM INHIBITOR 10A. REMARK 280 RESERVOIR: 0.1M CITRATE PH5.5, 18.5% PEG3350, 4MM NICL2. 1:1 REMARK 280 PROTEIN/RESERVOIR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.66500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 7 REMARK 465 THR A 354 REMARK 465 THR B 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS B 143 O HOH B 2031 1.82 REMARK 500 NH1 ARG B 328 OG1 THR B 339 1.89 REMARK 500 NZ LYS B 143 O HOH B 2031 1.91 REMARK 500 O LYS A 251 O HOH A 2052 1.99 REMARK 500 OD2 ASP B 258 O HOH B 2055 2.03 REMARK 500 CE MET B 312 O HOH B 2038 2.05 REMARK 500 N MET A 317 O HOH A 2068 2.07 REMARK 500 NH2 ARG A 328 OG1 THR A 339 2.13 REMARK 500 N ALA B 69 O HOH B 2011 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 112 -93.85 -80.81 REMARK 500 ARG A 152 69.33 -163.91 REMARK 500 ARG A 154 61.02 64.50 REMARK 500 VAL A 171 -60.62 -95.41 REMARK 500 MET A 192 14.74 59.76 REMARK 500 PHE A 202 167.24 174.27 REMARK 500 ALA A 236 48.71 -90.88 REMARK 500 ALA A 334 33.18 -81.56 REMARK 500 GLU A 349 0.10 -66.84 REMARK 500 TYR B 59 50.76 -118.94 REMARK 500 ASP B 61 20.79 -67.29 REMARK 500 ALA B 91 151.66 -49.89 REMARK 500 TYR B 111 155.46 177.88 REMARK 500 SER B 112 -72.88 -98.04 REMARK 500 ARG B 152 67.61 -160.81 REMARK 500 ARG B 154 78.29 36.44 REMARK 500 ILE B 156 12.24 -65.10 REMARK 500 ASP B 158 -37.14 -36.43 REMARK 500 LEU B 159 -5.68 -50.14 REMARK 500 GLU B 161 -66.43 -104.42 REMARK 500 LYS B 162 -30.35 -27.67 REMARK 500 SER B 164 -11.00 -144.59 REMARK 500 VAL B 171 -69.87 -100.42 REMARK 500 MET B 192 19.82 50.77 REMARK 500 CYS B 234 118.04 -161.26 REMARK 500 ALA B 236 37.36 -88.74 REMARK 500 LYS B 310 48.44 -77.90 REMARK 500 ASP B 311 69.75 102.23 REMARK 500 ASP B 318 -51.57 -25.89 REMARK 500 GLU B 349 -6.45 -55.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 GLU A 190 OE2 98.0 REMARK 620 3 HIS A 276 NE2 91.5 82.0 REMARK 620 4 Y28 A1354 OAW 91.0 165.9 108.6 REMARK 620 5 Y28 A1354 OAX 165.6 94.1 97.9 75.7 REMARK 620 6 HOH A2035 O 90.9 84.4 166.4 84.7 82.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 HIS A 240 NE2 111.2 REMARK 620 3 CYS A 306 SG 119.5 103.7 REMARK 620 4 CYS A 308 SG 117.7 101.4 101.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 GLU B 190 OE2 107.6 REMARK 620 3 HIS B 276 NE2 90.7 90.9 REMARK 620 4 Y28 B1354 OAW 91.5 157.7 100.4 REMARK 620 5 Y28 B1354 OAX 164.2 87.8 85.6 74.1 REMARK 620 6 HOH B2073 O 93.4 87.7 175.8 79.7 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 234 SG REMARK 620 2 HIS B 240 NE2 107.6 REMARK 620 3 CYS B 306 SG 120.2 113.1 REMARK 620 4 CYS B 308 SG 104.7 94.2 113.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y28 A 1354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Y28 B 1354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GP3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC CORE COMAIN OF JMJD2A REMARK 900 RELATED ID: 2GFA RELATED DB: PDB REMARK 900 DOUBLE TUDOR DOMAIN COMPLEX STRUCTURE REMARK 900 RELATED ID: 2VD7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR PYRIDINE-2,4- REMARK 900 DICARBOXYLIC ACID REMARK 900 RELATED ID: 2GP5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CATALYTIC CORE DOMAIN OF JMJD2ACOMPLEXED WITH REMARK 900 ALPHA-KETOGLUTARATE REMARK 900 RELATED ID: 2GF7 RELATED DB: PDB REMARK 900 DOUBLE TUDOR DOMAIN STRUCTURE DBREF 2WWJ A 7 353 UNP O75164 KDM4A_HUMAN 7 353 DBREF 2WWJ A 354 354 PDB 2WWJ 2WWJ 354 354 DBREF 2WWJ B 7 353 UNP O75164 KDM4A_HUMAN 7 353 DBREF 2WWJ B 354 354 PDB 2WWJ 2WWJ 354 354 SEQRES 1 A 348 THR LEU ASN PRO SER ALA ARG ILE MET THR PHE TYR PRO SEQRES 2 A 348 THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR ILE ALA SEQRES 3 A 348 TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY LEU ALA SEQRES 4 A 348 LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG ALA SER SEQRES 5 A 348 TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA PRO ILE SEQRES 6 A 348 GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE THR GLN SEQRES 7 A 348 TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG GLU PHE SEQRES 8 A 348 ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR PRO ARG SEQRES 9 A 348 TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR TRP LYS SEQRES 10 A 348 ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA ASP VAL SEQRES 11 A 348 ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU TRP ASN SEQRES 12 A 348 ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL GLU LYS SEQRES 13 A 348 GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR PRO TYR SEQRES 14 A 348 LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA TRP HIS SEQRES 15 A 348 THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR LEU HIS SEQRES 16 A 348 PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO PRO GLU SEQRES 17 A 348 HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY PHE PHE SEQRES 18 A 348 PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU ARG HIS SEQRES 19 A 348 LYS MET THR LEU ILE SER PRO LEU MET LEU LYS LYS TYR SEQRES 20 A 348 GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA GLY GLU SEQRES 21 A 348 PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA GLY PHE SEQRES 22 A 348 ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN PHE ALA SEQRES 23 A 348 THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA VAL LEU SEQRES 24 A 348 CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER MET ASP SEQRES 25 A 348 VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR LYS LEU SEQRES 26 A 348 TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP HIS THR SEQRES 27 A 348 LEU PRO THR PRO GLU ALA ALA GLU PHE THR SEQRES 1 B 348 THR LEU ASN PRO SER ALA ARG ILE MET THR PHE TYR PRO SEQRES 2 B 348 THR MET GLU GLU PHE ARG ASN PHE SER ARG TYR ILE ALA SEQRES 3 B 348 TYR ILE GLU SER GLN GLY ALA HIS ARG ALA GLY LEU ALA SEQRES 4 B 348 LYS VAL VAL PRO PRO LYS GLU TRP LYS PRO ARG ALA SER SEQRES 5 B 348 TYR ASP ASP ILE ASP ASP LEU VAL ILE PRO ALA PRO ILE SEQRES 6 B 348 GLN GLN LEU VAL THR GLY GLN SER GLY LEU PHE THR GLN SEQRES 7 B 348 TYR ASN ILE GLN LYS LYS ALA MET THR VAL ARG GLU PHE SEQRES 8 B 348 ARG LYS ILE ALA ASN SER ASP LYS TYR CYS THR PRO ARG SEQRES 9 B 348 TYR SER GLU PHE GLU GLU LEU GLU ARG LYS TYR TRP LYS SEQRES 10 B 348 ASN LEU THR PHE ASN PRO PRO ILE TYR GLY ALA ASP VAL SEQRES 11 B 348 ASN GLY THR LEU TYR GLU LYS HIS VAL ASP GLU TRP ASN SEQRES 12 B 348 ILE GLY ARG LEU ARG THR ILE LEU ASP LEU VAL GLU LYS SEQRES 13 B 348 GLU SER GLY ILE THR ILE GLU GLY VAL ASN THR PRO TYR SEQRES 14 B 348 LEU TYR PHE GLY MET TRP LYS THR SER PHE ALA TRP HIS SEQRES 15 B 348 THR GLU ASP MET ASP LEU TYR SER ILE ASN TYR LEU HIS SEQRES 16 B 348 PHE GLY GLU PRO LYS SER TRP TYR SER VAL PRO PRO GLU SEQRES 17 B 348 HIS GLY LYS ARG LEU GLU ARG LEU ALA LYS GLY PHE PHE SEQRES 18 B 348 PRO GLY SER ALA GLN SER CYS GLU ALA PHE LEU ARG HIS SEQRES 19 B 348 LYS MET THR LEU ILE SER PRO LEU MET LEU LYS LYS TYR SEQRES 20 B 348 GLY ILE PRO PHE ASP LYS VAL THR GLN GLU ALA GLY GLU SEQRES 21 B 348 PHE MET ILE THR PHE PRO TYR GLY TYR HIS ALA GLY PHE SEQRES 22 B 348 ASN HIS GLY PHE ASN CYS ALA GLU SER THR ASN PHE ALA SEQRES 23 B 348 THR ARG ARG TRP ILE GLU TYR GLY LYS GLN ALA VAL LEU SEQRES 24 B 348 CYS SER CYS ARG LYS ASP MET VAL LYS ILE SER MET ASP SEQRES 25 B 348 VAL PHE VAL ARG LYS PHE GLN PRO GLU ARG TYR LYS LEU SEQRES 26 B 348 TRP LYS ALA GLY LYS ASP ASN THR VAL ILE ASP HIS THR SEQRES 27 B 348 LEU PRO THR PRO GLU ALA ALA GLU PHE THR HET NI A 501 1 HET ZN A 502 1 HET Y28 A1354 25 HET NI B 501 1 HET ZN B 502 1 HET Y28 B1354 25 HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM Y28 O-BENZYL-N-(CARBOXYCARBONYL)-D-TYROSINE HETSYN Y28 (2R)-2-(CARBOXYCARBONYLAMINO)-3-(4- HETSYN 2 Y28 PHENYLMETHOXYPHENYL)PROPANOIC ACID FORMUL 3 NI 2(NI 2+) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 Y28 2(C18 H17 N O6) FORMUL 9 HOH *144(H2 O) HELIX 1 1 THR A 20 ARG A 25 1 6 HELIX 2 2 ASN A 26 GLN A 37 1 12 HELIX 3 3 GLY A 38 ALA A 42 5 5 HELIX 4 4 VAL A 94 SER A 103 1 10 HELIX 5 5 GLU A 113 LEU A 125 1 13 HELIX 6 6 THR A 155 LEU A 157 5 3 HELIX 7 7 ASP A 158 GLY A 165 1 8 HELIX 8 8 GLU A 190 LEU A 194 5 5 HELIX 9 9 PRO A 212 GLU A 214 5 3 HELIX 10 10 HIS A 215 PHE A 227 1 13 HELIX 11 11 PHE A 227 CYS A 234 1 8 HELIX 12 12 ALA A 236 LYS A 241 5 6 HELIX 13 13 SER A 246 TYR A 253 1 8 HELIX 14 14 ARG A 295 ALA A 303 1 9 HELIX 15 15 MET A 317 GLN A 325 1 9 HELIX 16 16 ARG A 328 ALA A 334 1 7 HELIX 17 17 THR A 347 ALA A 351 5 5 HELIX 18 18 THR B 20 ARG B 25 1 6 HELIX 19 19 ASN B 26 GLN B 37 1 12 HELIX 20 20 GLY B 38 ALA B 42 5 5 HELIX 21 21 VAL B 94 ASN B 102 1 9 HELIX 22 22 GLU B 113 LEU B 125 1 13 HELIX 23 23 LEU B 157 GLU B 161 5 5 HELIX 24 24 GLU B 190 LEU B 194 5 5 HELIX 25 25 PRO B 212 GLU B 214 5 3 HELIX 26 26 HIS B 215 PHE B 227 1 13 HELIX 27 27 PHE B 227 CYS B 234 1 8 HELIX 28 28 ALA B 236 LYS B 241 5 6 HELIX 29 29 SER B 246 TYR B 253 1 8 HELIX 30 30 ARG B 295 ALA B 303 1 9 HELIX 31 31 MET B 317 GLN B 325 1 9 HELIX 32 32 GLN B 325 ALA B 334 1 10 HELIX 33 33 THR B 347 ALA B 351 5 5 SHEET 1 AA10 MET A 15 PHE A 17 0 SHEET 2 AA10 LEU A 44 VAL A 47 1 O LEU A 44 N MET A 15 SHEET 3 AA10 PHE A 267 THR A 270 -1 O PHE A 267 N VAL A 47 SHEET 4 AA10 TYR A 195 GLY A 203 -1 O SER A 196 N THR A 270 SHEET 5 AA10 ASN A 284 PHE A 291 -1 O CYS A 285 N HIS A 201 SHEET 6 AA10 TYR A 175 GLY A 179 -1 O TYR A 175 N SER A 288 SHEET 7 AA10 ILE A 131 ASN A 137 -1 O GLY A 133 N PHE A 178 SHEET 8 AA10 ILE A 71 GLN A 78 -1 O ILE A 71 N TYR A 132 SHEET 9 AA10 LEU A 81 GLN A 88 -1 O LEU A 81 N GLN A 78 SHEET 10 AA10 THR A 243 ILE A 245 -1 O LEU A 244 N PHE A 82 SHEET 1 AB 2 VAL A 66 ILE A 67 0 SHEET 2 AB 2 MET A 92 THR A 93 -1 O MET A 92 N ILE A 67 SHEET 1 AC 4 SER A 184 HIS A 188 0 SHEET 2 AC 4 HIS A 276 ASN A 280 -1 O HIS A 276 N HIS A 188 SHEET 3 AC 4 LYS A 206 SER A 210 -1 O SER A 207 N PHE A 279 SHEET 4 AC 4 ASP A 258 GLN A 262 -1 O ASP A 258 N SER A 210 SHEET 1 BA10 MET B 15 PHE B 17 0 SHEET 2 BA10 LEU B 44 VAL B 47 1 O LEU B 44 N MET B 15 SHEET 3 BA10 PHE B 267 THR B 270 -1 O PHE B 267 N VAL B 47 SHEET 4 BA10 TYR B 195 GLY B 203 -1 O SER B 196 N THR B 270 SHEET 5 BA10 ASN B 284 PHE B 291 -1 O CYS B 285 N HIS B 201 SHEET 6 BA10 TYR B 175 GLY B 179 -1 O TYR B 175 N SER B 288 SHEET 7 BA10 ILE B 131 ASN B 137 -1 O GLY B 133 N PHE B 178 SHEET 8 BA10 ILE B 71 GLN B 78 -1 O ILE B 71 N TYR B 132 SHEET 9 BA10 LEU B 81 GLN B 88 -1 O LEU B 81 N GLN B 78 SHEET 10 BA10 THR B 243 ILE B 245 -1 O LEU B 244 N PHE B 82 SHEET 1 BB 2 VAL B 66 ILE B 67 0 SHEET 2 BB 2 MET B 92 THR B 93 -1 O MET B 92 N ILE B 67 SHEET 1 BC 4 SER B 184 HIS B 188 0 SHEET 2 BC 4 TYR B 275 ASN B 280 -1 O HIS B 276 N HIS B 188 SHEET 3 BC 4 LYS B 206 VAL B 211 -1 O SER B 207 N PHE B 279 SHEET 4 BC 4 ASP B 258 GLN B 262 -1 O ASP B 258 N SER B 210 LINK NE2 HIS A 188 NI NI A 501 1555 1555 2.32 LINK OE2 GLU A 190 NI NI A 501 1555 1555 2.02 LINK SG CYS A 234 ZN ZN A 502 1555 1555 2.34 LINK NE2 HIS A 240 ZN ZN A 502 1555 1555 2.09 LINK NE2 HIS A 276 NI NI A 501 1555 1555 2.14 LINK SG CYS A 306 ZN ZN A 502 1555 1555 2.26 LINK SG CYS A 308 ZN ZN A 502 1555 1555 2.41 LINK NI NI A 501 OAW Y28 A1354 1555 1555 2.19 LINK NI NI A 501 OAX Y28 A1354 1555 1555 2.18 LINK NI NI A 501 O HOH A2035 1555 1555 1.88 LINK NE2 HIS B 188 NI NI B 501 1555 1555 2.13 LINK OE2 GLU B 190 NI NI B 501 1555 1555 2.15 LINK SG CYS B 234 ZN ZN B 502 1555 1555 2.26 LINK NE2 HIS B 240 ZN ZN B 502 1555 1555 2.10 LINK NE2 HIS B 276 NI NI B 501 1555 1555 2.16 LINK SG CYS B 306 ZN ZN B 502 1555 1555 2.30 LINK SG CYS B 308 ZN ZN B 502 1555 1555 2.40 LINK NI NI B 501 OAW Y28 B1354 1555 1555 2.31 LINK NI NI B 501 OAX Y28 B1354 1555 1555 2.22 LINK NI NI B 501 O HOH B2073 1555 1555 2.18 SITE 1 AC1 18 ILE A 71 GLN A 84 ASN A 86 TYR A 132 SITE 2 AC1 18 TYR A 177 PHE A 185 ALA A 186 HIS A 188 SITE 3 AC1 18 GLU A 190 SER A 196 ASN A 198 LYS A 206 SITE 4 AC1 18 TRP A 208 LYS A 241 HIS A 276 SER A 288 SITE 5 AC1 18 NI A 501 HOH A2035 SITE 1 AC2 5 HIS A 188 GLU A 190 HIS A 276 Y28 A1354 SITE 2 AC2 5 HOH A2035 SITE 1 AC3 4 CYS A 234 HIS A 240 CYS A 306 CYS A 308 SITE 1 AC4 17 ILE B 71 GLN B 84 ASN B 86 TYR B 132 SITE 2 AC4 17 TYR B 177 PHE B 185 HIS B 188 GLU B 190 SITE 3 AC4 17 SER B 196 ASN B 198 LYS B 206 TRP B 208 SITE 4 AC4 17 LYS B 241 HIS B 276 SER B 288 NI B 501 SITE 5 AC4 17 HOH B2073 SITE 1 AC5 5 HIS B 188 GLU B 190 HIS B 276 Y28 B1354 SITE 2 AC5 5 HOH B2073 SITE 1 AC6 4 CYS B 234 HIS B 240 CYS B 306 CYS B 308 CRYST1 101.330 148.970 57.110 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009869 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017510 0.00000 MTRIX1 1 -0.998847 0.034129 0.033748 -67.16800 1 MTRIX2 1 -0.029647 -0.991664 0.125396 -77.68600 1 MTRIX3 1 0.037746 0.124251 0.991533 -16.89600 1