HEADER OXIDOREDUCTASE 26-OCT-09 2WWN TITLE YERSINIA PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE C WITH BOUND AZIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE C; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 STRAIN: IP32953; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P KEYWDS METAL-BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BASAK,M.L.DUFFIELD,C.E.NAYLOR,J.HUYET,R.W.TITBALL REVDAT 3 06-NOV-24 2WWN 1 REMARK REVDAT 2 20-DEC-23 2WWN 1 REMARK LINK REVDAT 1 03-NOV-10 2WWN 0 SPRSDE 03-NOV-10 2WWN 2WN1 JRNL AUTH J.HUYET,C.E.NAYLOR,R.W.TITBALL,H.BULLIFENT,N.WALKER, JRNL AUTH 2 H.E.JONES,M.L.DUFFIED,A.K.BASAK JRNL TITL CRYSTAL STRUCTURE OF THE YERSINIA PSEUDOTUBERCULOSIS JRNL TITL 2 SUPEROXIDE DISMUTASE (SODC) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8177 - 4.4446 1.00 2774 127 0.1663 0.1982 REMARK 3 2 4.4446 - 3.5284 1.00 2630 135 0.1637 0.1995 REMARK 3 3 3.5284 - 3.0825 1.00 2583 165 0.1944 0.2612 REMARK 3 4 3.0825 - 2.8008 1.00 2604 137 0.2006 0.3010 REMARK 3 5 2.8008 - 2.6000 1.00 2597 134 0.2175 0.2528 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 34.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.85060 REMARK 3 B22 (A**2) : 5.85060 REMARK 3 B33 (A**2) : -11.70110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2285 REMARK 3 ANGLE : 0.870 3115 REMARK 3 CHIRALITY : 0.052 350 REMARK 3 PLANARITY : 0.008 417 REMARK 3 DIHEDRAL : 14.771 791 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 47.1062 -10.3839 8.2765 REMARK 3 T TENSOR REMARK 3 T11: 0.4326 T22: 0.3802 REMARK 3 T33: 0.2704 T12: -0.0863 REMARK 3 T13: 0.0361 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.0339 L22: 1.6162 REMARK 3 L33: 2.6515 L12: -0.5257 REMARK 3 L13: 0.0976 L23: -0.1610 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.1879 S13: 0.0542 REMARK 3 S21: 0.2580 S22: -0.2102 S23: 0.0401 REMARK 3 S31: -0.1544 S32: 0.0430 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 33.8735 -16.4601 -14.6077 REMARK 3 T TENSOR REMARK 3 T11: 0.3644 T22: 0.3180 REMARK 3 T33: 0.4128 T12: -0.0527 REMARK 3 T13: -0.0652 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 1.5903 L22: 1.5812 REMARK 3 L33: 2.3712 L12: -0.5099 REMARK 3 L13: -0.4877 L23: 0.4752 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.0010 S13: -0.0541 REMARK 3 S21: -0.2231 S22: -0.1699 S23: 0.5203 REMARK 3 S31: 0.1600 S32: -0.2127 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 7:11 OR RESSEQ 13:18 REMARK 3 OR RESSEQ 20:41 OR RESSEQ 43:56 OR RESSEQ REMARK 3 58:64 OR RESSEQ 78:94 OR RESSEQ 96:143 OR REMARK 3 OR RESSEQ 145:145 145:145 OR RESSEQ 147: REMARK 3 160 REMARK 3 SELECTION : CHAIN B AND (RESSEQ 7:11 OR RESSEQ 13:18 REMARK 3 OR RESSEQ 20:41 OR RESSEQ 43:56 OR RESSEQ REMARK 3 58:64 OR RESSEQ 78:94 OR RESSEQ 96:143 OR REMARK 3 RESSEQ 145:145 OR RESSEQ 147:160) REMARK 3 ATOM PAIRS NUMBER : 945 REMARK 3 RMSD : 0.075 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SILICON (311) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ESO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES-NAOH, PH 6.5, 0.2M ZNSO4, 25% REMARK 280 PEG-MME 550, 10MM NA AZIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.23867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.47733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.47733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.23867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2017 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -7 REMARK 465 MET A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 MET A -3 REMARK 465 ASN A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 ASN B -7 REMARK 465 MET B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 MET B -3 REMARK 465 ASN B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 ASN B 4 REMARK 465 ASP B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 LYS A 58 CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 84 CD CE NZ REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 58 CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 84 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 138.09 65.60 REMARK 500 PRO A 59 47.20 -74.83 REMARK 500 ALA A 73 11.52 58.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1166 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD2 REMARK 620 2 HOH A2067 O 77.5 REMARK 620 3 HIS B 130 NE2 101.1 102.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1162 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 54 ND1 REMARK 620 2 HIS A 56 NE2 130.0 REMARK 620 3 HIS A 79 NE2 83.9 97.0 REMARK 620 4 HIS A 135 NE2 91.0 112.1 145.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 ND1 REMARK 620 2 HIS A 88 ND1 99.1 REMARK 620 3 HIS A 97 ND1 92.2 120.7 REMARK 620 4 ASP A 100 OD1 123.4 99.4 121.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 130 NE2 REMARK 620 2 HOH A2064 O 176.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1165 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 144 NE2 REMARK 620 2 HIS B 144 NE2 78.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1162 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 54 ND1 REMARK 620 2 HIS B 56 NE2 135.9 REMARK 620 3 HIS B 79 NE2 83.0 95.1 REMARK 620 4 HIS B 135 NE2 96.9 103.4 152.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 ND1 REMARK 620 2 HIS B 88 ND1 108.2 REMARK 620 3 HIS B 97 ND1 98.7 121.4 REMARK 620 4 ASP B 100 OD1 115.0 93.1 121.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI B 1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZI B 1165 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WWO RELATED DB: PDB REMARK 900 YERSINIA PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE C REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE CONTAINS SIGNAL PEPTIDE NOT PRESENT IN MATURE REMARK 999 PROTEIN DBREF 2WWN A -7 161 UNP Q66ED7 Q66ED7_YERPS 21 189 DBREF 2WWN B -7 161 UNP Q66ED7 Q66ED7_YERPS 21 189 SEQRES 1 A 169 ASN MET ALA GLY MET ASN ASP LYS ALA SER MET ASN ASP SEQRES 2 A 169 LYS ALA SER MET THR VAL LYS ILE ASN GLU SER LEU PRO SEQRES 3 A 169 GLN GLY ASN GLY LYS ALA LEU GLY THR VAL THR VAL THR SEQRES 4 A 169 GLU THR ALA TYR GLY LEU LEU PHE THR PRO HIS LEU THR SEQRES 5 A 169 GLY LEU ALA PRO GLY ILE HIS GLY PHE HIS LEU HIS GLU SEQRES 6 A 169 LYS PRO SER CYS ALA PRO GLY MET LYS ASP GLY LYS ALA SEQRES 7 A 169 VAL PRO ALA LEU ALA ALA GLY GLY HIS LEU ASP PRO ASN SEQRES 8 A 169 LYS THR GLY VAL HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 9 A 169 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 10 A 169 GLY THR ALA THR TYR PRO VAL LEU ALA PRO ARG LEU LYS SEQRES 11 A 169 SER LEU SER GLU VAL LYS GLN HIS ALA LEU MET ILE HIS SEQRES 12 A 169 ALA GLY GLY ASP ASN TYR SER ASP HIS PRO MET PRO LEU SEQRES 13 A 169 GLY GLY GLY GLY ALA ARG MET ALA CYS GLY VAL ILE GLU SEQRES 1 B 169 ASN MET ALA GLY MET ASN ASP LYS ALA SER MET ASN ASP SEQRES 2 B 169 LYS ALA SER MET THR VAL LYS ILE ASN GLU SER LEU PRO SEQRES 3 B 169 GLN GLY ASN GLY LYS ALA LEU GLY THR VAL THR VAL THR SEQRES 4 B 169 GLU THR ALA TYR GLY LEU LEU PHE THR PRO HIS LEU THR SEQRES 5 B 169 GLY LEU ALA PRO GLY ILE HIS GLY PHE HIS LEU HIS GLU SEQRES 6 B 169 LYS PRO SER CYS ALA PRO GLY MET LYS ASP GLY LYS ALA SEQRES 7 B 169 VAL PRO ALA LEU ALA ALA GLY GLY HIS LEU ASP PRO ASN SEQRES 8 B 169 LYS THR GLY VAL HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 9 B 169 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 10 B 169 GLY THR ALA THR TYR PRO VAL LEU ALA PRO ARG LEU LYS SEQRES 11 B 169 SER LEU SER GLU VAL LYS GLN HIS ALA LEU MET ILE HIS SEQRES 12 B 169 ALA GLY GLY ASP ASN TYR SER ASP HIS PRO MET PRO LEU SEQRES 13 B 169 GLY GLY GLY GLY ALA ARG MET ALA CYS GLY VAL ILE GLU HET ZN A1162 1 HET ZN A1163 1 HET ZN A1164 1 HET ZN A1165 1 HET ZN A1166 1 HET MES A1167 12 HET ZN B1162 1 HET ZN B1163 1 HET AZI B1164 3 HET AZI B1165 3 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM AZI AZIDE ION FORMUL 3 ZN 7(ZN 2+) FORMUL 8 MES C6 H13 N O4 S FORMUL 11 AZI 2(N3 1-) FORMUL 13 HOH *132(H2 O) HELIX 1 1 ALA A 73 GLY A 77 5 5 HELIX 2 2 SER A 123 VAL A 127 5 5 HELIX 3 3 MET A 146 GLY A 151 5 6 HELIX 4 4 ALA B 73 GLY B 77 5 5 HELIX 5 5 SER B 123 VAL B 127 5 5 HELIX 6 6 MET B 146 GLY B 151 5 6 SHEET 1 AA 7 PHE A 53 HIS A 56 0 SHEET 2 AA 7 HIS A 130 HIS A 135 -1 O ALA A 131 N HIS A 56 SHEET 3 AA 7 ARG A 154 ILE A 160 -1 N MET A 155 O ILE A 134 SHEET 4 AA 7 SER A 8 SER A 16 -1 O ASN A 14 N CYS A 157 SHEET 5 AA 7 ASN A 21 THR A 33 -1 N GLY A 22 O GLU A 15 SHEET 6 AA 7 GLY A 36 LEU A 43 -1 O GLY A 36 N THR A 33 SHEET 7 AA 7 VAL A 116 ALA A 118 -1 O VAL A 116 N PHE A 39 SHEET 1 AB 2 GLY A 49 HIS A 51 0 SHEET 2 AB 2 LEU A 104 VAL A 106 -1 O LEU A 104 N HIS A 51 SHEET 1 AC 2 GLY A 64 LYS A 66 0 SHEET 2 AC 2 LYS A 69 VAL A 71 -1 O LYS A 69 N LYS A 66 SHEET 1 BA 7 PHE B 53 HIS B 56 0 SHEET 2 BA 7 ALA B 131 HIS B 135 -1 O ALA B 131 N HIS B 56 SHEET 3 BA 7 ARG B 154 VAL B 159 -1 N MET B 155 O ILE B 134 SHEET 4 BA 7 SER B 8 SER B 16 -1 O ASN B 14 N CYS B 157 SHEET 5 BA 7 ASN B 21 THR B 33 -1 N GLY B 22 O GLU B 15 SHEET 6 BA 7 GLY B 36 LEU B 43 -1 O GLY B 36 N THR B 33 SHEET 7 BA 7 VAL B 116 ALA B 118 -1 O VAL B 116 N PHE B 39 SHEET 1 BB 2 GLY B 49 HIS B 51 0 SHEET 2 BB 2 LEU B 104 VAL B 106 -1 O LEU B 104 N HIS B 51 SHEET 1 BC 2 GLY B 64 LYS B 66 0 SHEET 2 BC 2 LYS B 69 VAL B 71 -1 O LYS B 69 N LYS B 66 SSBOND 1 CYS A 61 CYS A 157 1555 1555 2.03 SSBOND 2 CYS B 61 CYS B 157 1555 1555 2.04 LINK OD2 ASP A 5 ZN ZN A1166 1555 1555 2.03 LINK ND1 HIS A 54 ZN ZN A1162 1555 1555 2.35 LINK NE2 HIS A 56 ZN ZN A1162 1555 1555 2.30 LINK NE2 HIS A 79 ZN ZN A1162 1555 1555 2.20 LINK ND1 HIS A 79 ZN ZN A1163 1555 1555 2.33 LINK ND1 HIS A 88 ZN ZN A1163 1555 1555 2.26 LINK ND1 HIS A 97 ZN ZN A1163 1555 1555 2.36 LINK OD1 ASP A 100 ZN ZN A1163 1555 1555 2.12 LINK NE2 HIS A 130 ZN ZN A1164 1555 1555 2.21 LINK NE2 HIS A 135 ZN ZN A1162 1555 1555 2.20 LINK NE2 HIS A 144 ZN ZN A1165 1555 1555 2.17 LINK ZN ZN A1164 O HOH A2064 1555 1555 2.44 LINK ZN ZN A1165 NE2 HIS B 144 1555 4655 2.28 LINK ZN ZN A1166 O HOH A2067 1555 1555 2.42 LINK ZN ZN A1166 NE2 HIS B 130 1555 2545 2.10 LINK ND1 HIS B 54 ZN ZN B1162 1555 1555 2.31 LINK NE2 HIS B 56 ZN ZN B1162 1555 1555 2.34 LINK NE2 HIS B 79 ZN ZN B1162 1555 1555 2.22 LINK ND1 HIS B 79 ZN ZN B1163 1555 1555 2.19 LINK ND1 HIS B 88 ZN ZN B1163 1555 1555 2.20 LINK ND1 HIS B 97 ZN ZN B1163 1555 1555 2.37 LINK OD1 ASP B 100 ZN ZN B1163 1555 1555 2.14 LINK NE2 HIS B 135 ZN ZN B1162 1555 1555 2.26 CISPEP 1 HIS A 144 PRO A 145 0 2.47 CISPEP 2 HIS B 144 PRO B 145 0 2.79 SITE 1 AC1 4 HIS A 54 HIS A 56 HIS A 79 HIS A 135 SITE 1 AC2 4 HIS B 54 HIS B 56 HIS B 79 HIS B 135 SITE 1 AC3 4 HIS A 79 HIS A 88 HIS A 97 ASP A 100 SITE 1 AC4 4 HIS A 130 HOH A2064 HOH A2065 HOH A2066 SITE 1 AC5 2 HIS A 144 HIS B 144 SITE 1 AC6 4 HIS B 79 HIS B 88 HIS B 97 ASP B 100 SITE 1 AC7 4 ASN A 4 ASP A 5 HOH A2067 HIS B 130 SITE 1 AC8 5 ASN A 140 THR B 29 HIS B 42 THR B 113 SITE 2 AC8 5 HOH B2016 SITE 1 AC9 1 THR B 31 SITE 1 BC1 3 LEU B 46 HOH B2064 HOH B2065 CRYST1 96.561 96.561 81.716 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010356 0.005979 0.000000 0.00000 SCALE2 0.000000 0.011958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012238 0.00000 MTRIX1 1 0.401830 -0.672470 -0.621540 13.36260 1 MTRIX2 1 -0.686610 -0.670360 0.281400 6.77134 1 MTRIX3 1 -0.605890 0.313680 -0.731090 23.20671 1