HEADER OXIDOREDUCTASE 26-OCT-09 2WWO TITLE YERSINIA PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE C COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE C; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 STRAIN: IP32953; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P KEYWDS OXIDOREDUCTASE, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BASAK,M.L.DUFFIELD,C.E.NAYLOR,J.HUYET,R.W.TITBALL REVDAT 3 23-OCT-24 2WWO 1 REMARK REVDAT 2 20-DEC-23 2WWO 1 REMARK LINK REVDAT 1 03-NOV-10 2WWO 0 SPRSDE 03-NOV-10 2WWO 2WN0 JRNL AUTH J.HUYET,C.E.NAYLOR,R.W.TITBALL,H.BULLIFENT,N.WALKER, JRNL AUTH 2 H.E.JONES,M.L.DUFFIED,A.K.BASAK JRNL TITL CRYSTAL STRUCTURE OF THE YERSINIA PSEUDOTUBERCULOSIS JRNL TITL 2 SUPEROXIDE DISMUTASE (SODC) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.540 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7832 - 4.5900 1.00 2562 117 0.1541 0.1810 REMARK 3 2 4.5900 - 3.6436 1.00 2460 129 0.1335 0.1690 REMARK 3 3 3.6436 - 3.1831 1.00 2386 153 0.1675 0.1972 REMARK 3 4 3.1831 - 2.8921 1.00 2434 116 0.1728 0.2417 REMARK 3 5 2.8921 - 2.6848 1.00 2408 135 0.1712 0.2391 REMARK 3 6 2.6848 - 2.5265 1.00 2412 128 0.1725 0.2113 REMARK 3 7 2.5265 - 2.4000 1.00 2366 138 0.1971 0.2547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 55.14 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.75880 REMARK 3 B22 (A**2) : 5.75880 REMARK 3 B33 (A**2) : -11.51760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2323 REMARK 3 ANGLE : 0.992 3160 REMARK 3 CHIRALITY : 0.062 351 REMARK 3 PLANARITY : 0.008 421 REMARK 3 DIHEDRAL : 16.587 824 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 4:21 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0546 16.9675 -42.5010 REMARK 3 T TENSOR REMARK 3 T11: 0.6147 T22: 0.4237 REMARK 3 T33: 0.3125 T12: 0.0545 REMARK 3 T13: -0.0853 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.6769 L22: 0.2477 REMARK 3 L33: 0.4480 L12: -0.1220 REMARK 3 L13: -0.0481 L23: -0.7563 REMARK 3 S TENSOR REMARK 3 S11: 0.1923 S12: 0.3494 S13: -0.1067 REMARK 3 S21: -0.6004 S22: 0.1276 S23: -0.6179 REMARK 3 S31: -0.1403 S32: -0.0426 S33: 0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 22:75 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0986 10.9480 -38.9866 REMARK 3 T TENSOR REMARK 3 T11: 0.4854 T22: 0.3456 REMARK 3 T33: 0.2604 T12: 0.0956 REMARK 3 T13: -0.0628 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.6227 L22: 0.1281 REMARK 3 L33: 1.7830 L12: 0.2753 REMARK 3 L13: -0.4722 L23: -0.8531 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.3406 S13: 0.0183 REMARK 3 S21: -0.3011 S22: -0.1939 S23: 0.0347 REMARK 3 S31: 0.2395 S32: 0.1215 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 76:155 REMARK 3 ORIGIN FOR THE GROUP (A): 49.4409 8.1425 -31.3035 REMARK 3 T TENSOR REMARK 3 T11: 0.3726 T22: 0.3152 REMARK 3 T33: 0.3004 T12: 0.0539 REMARK 3 T13: 0.0087 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.6244 L22: 1.7809 REMARK 3 L33: 1.6379 L12: 0.0022 REMARK 3 L13: 0.2069 L23: 0.2763 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.0747 S13: -0.1393 REMARK 3 S21: -0.2277 S22: -0.1139 S23: -0.0241 REMARK 3 S31: 0.4001 S32: 0.1285 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 156:161 REMARK 3 ORIGIN FOR THE GROUP (A): 49.9900 15.2563 -43.0827 REMARK 3 T TENSOR REMARK 3 T11: 0.5666 T22: 0.4112 REMARK 3 T33: 0.3041 T12: 0.0820 REMARK 3 T13: -0.0208 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.0094 L22: -0.0415 REMARK 3 L33: -0.0035 L12: 0.1413 REMARK 3 L13: 0.0377 L23: 0.0680 REMARK 3 S TENSOR REMARK 3 S11: -0.2511 S12: 0.6632 S13: 0.2352 REMARK 3 S21: -0.5787 S22: -0.1956 S23: -0.4564 REMARK 3 S31: -0.5972 S32: -0.0658 S33: -0.0010 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESID 7:21 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8167 8.9190 -6.2853 REMARK 3 T TENSOR REMARK 3 T11: 0.4844 T22: 0.3144 REMARK 3 T33: 0.4242 T12: -0.0151 REMARK 3 T13: 0.1024 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: -0.0266 L22: -0.0104 REMARK 3 L33: 0.2741 L12: -0.3494 REMARK 3 L13: 0.0324 L23: 0.1595 REMARK 3 S TENSOR REMARK 3 S11: 0.3099 S12: -0.6799 S13: 0.1413 REMARK 3 S21: 0.7097 S22: -0.3049 S23: 0.1371 REMARK 3 S31: 0.1214 S32: -0.0574 S33: -0.0022 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESID 22:75 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4848 13.7762 -10.9156 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.2440 REMARK 3 T33: 0.3803 T12: 0.0543 REMARK 3 T13: 0.0789 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 0.6411 L22: 1.0977 REMARK 3 L33: 1.5778 L12: 0.5961 REMARK 3 L13: -0.5073 L23: -0.6168 REMARK 3 S TENSOR REMARK 3 S11: 0.1282 S12: -0.0606 S13: 0.0912 REMARK 3 S21: 0.2946 S22: -0.0690 S23: 0.3857 REMARK 3 S31: -0.1227 S32: -0.1166 S33: -0.0004 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 76:143 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1935 19.4975 -14.9175 REMARK 3 T TENSOR REMARK 3 T11: 0.3273 T22: 0.2821 REMARK 3 T33: 0.3141 T12: 0.0080 REMARK 3 T13: 0.0163 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.6052 L22: 1.5601 REMARK 3 L33: 0.4877 L12: -0.1319 REMARK 3 L13: -0.1070 L23: -0.2887 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.0222 S13: 0.0025 REMARK 3 S21: 0.0933 S22: -0.0727 S23: 0.2424 REMARK 3 S31: -0.2324 S32: -0.1072 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESID 156:161 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4991 12.5458 -4.0566 REMARK 3 T TENSOR REMARK 3 T11: 0.4692 T22: 0.3168 REMARK 3 T33: 0.3609 T12: -0.0424 REMARK 3 T13: 0.0788 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: -0.0541 L22: -0.0535 REMARK 3 L33: -0.0381 L12: 0.0027 REMARK 3 L13: -0.1472 L23: -0.0725 REMARK 3 S TENSOR REMARK 3 S11: 0.2323 S12: -1.0518 S13: 0.1102 REMARK 3 S21: 0.8988 S22: -0.3499 S23: -0.0861 REMARK 3 S31: -0.0633 S32: -0.0800 S33: 0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 7:18 OR RESSEQ 20:56 REMARK 3 OR RESSEQ 58:64 OR RESSEQ 70:143 OR REMARK 3 RESSEQ 145:145 OR RESSEQ 147:160) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 7:18 OR RESSEQ 20:56 REMARK 3 OR RESSEQ 58:64 OR RESSEQ 70:143 OR REMARK 3 RESSEQ 145:145 OR RESSEQ 147:160) REMARK 3 ATOM PAIRS NUMBER : 1021 REMARK 3 RMSD : 0.078 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SILICON (311) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 84.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ESO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES-NAOH, PH 6.5, 0.2M ZNSO4, 25% REMARK 280 PEG-MME 550 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.27000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.54000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.54000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2035 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A -7 REMARK 465 MET A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 MET A -3 REMARK 465 ASN A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 MET A 3 REMARK 465 ASN B -7 REMARK 465 MET B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 MET B -3 REMARK 465 ASN B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 MET B 3 REMARK 465 ASN B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 12 CE NZ REMARK 470 LYS A 23 CE NZ REMARK 470 LYS A 66 CD CE NZ REMARK 470 LYS A 69 CE NZ REMARK 470 LYS A 84 CD CE NZ REMARK 470 LYS B 66 CE NZ REMARK 470 LYS B 69 CD CE NZ REMARK 470 LYS B 84 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 59 44.40 -72.73 REMARK 500 ALA A 73 14.74 56.30 REMARK 500 ALA B 73 15.21 59.95 REMARK 500 ASP B 81 65.97 -155.97 REMARK 500 ASP B 139 110.28 -161.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH B 2035 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD1 REMARK 620 2 ASP A 5 OD2 61.1 REMARK 620 3 HOH A2093 O 78.1 94.3 REMARK 620 4 HOH A2094 O 112.0 163.6 98.7 REMARK 620 5 HIS B 130 NE2 144.2 83.1 106.5 102.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1165 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 54 ND1 REMARK 620 2 HIS A 56 NE2 129.5 REMARK 620 3 HIS A 79 NE2 86.1 98.0 REMARK 620 4 HIS A 135 NE2 90.5 106.9 150.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1162 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 ND1 REMARK 620 2 HIS A 88 ND1 101.6 REMARK 620 3 HIS A 97 ND1 101.7 122.2 REMARK 620 4 ASP A 100 OD1 113.5 98.6 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 130 NE2 REMARK 620 2 HOH A2090 O 85.2 REMARK 620 3 HOH A2091 O 86.0 170.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 144 NE2 REMARK 620 2 HIS B 144 NE2 87.8 REMARK 620 3 HOH B2118 O 105.3 92.4 REMARK 620 4 HOH B2119 O 82.0 89.3 172.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1164 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 54 ND1 REMARK 620 2 HIS B 56 NE2 129.1 REMARK 620 3 HIS B 79 NE2 79.0 98.7 REMARK 620 4 HIS B 135 NE2 96.3 104.9 152.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1162 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 ND1 REMARK 620 2 HIS B 88 ND1 104.8 REMARK 620 3 HIS B 97 ND1 103.4 126.6 REMARK 620 4 ASP B 100 OD1 108.0 90.6 121.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WWN RELATED DB: PDB REMARK 900 YERSINIA PSEUDOTUBERCULOSIS SUPEROXIDE DISMUTASE C WITH BOUND AZIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE CONTAINS SIGNAL PEPTIDE NOT PRESENT IN MATURE REMARK 999 PROTEIN DBREF 2WWO A -7 161 UNP Q66ED7 Q66ED7_YERPS 21 189 DBREF 2WWO B -7 161 UNP Q66ED7 Q66ED7_YERPS 21 189 SEQRES 1 A 169 ASN MET ALA GLY MET ASN ASP LYS ALA SER MET ASN ASP SEQRES 2 A 169 LYS ALA SER MET THR VAL LYS ILE ASN GLU SER LEU PRO SEQRES 3 A 169 GLN GLY ASN GLY LYS ALA LEU GLY THR VAL THR VAL THR SEQRES 4 A 169 GLU THR ALA TYR GLY LEU LEU PHE THR PRO HIS LEU THR SEQRES 5 A 169 GLY LEU ALA PRO GLY ILE HIS GLY PHE HIS LEU HIS GLU SEQRES 6 A 169 LYS PRO SER CYS ALA PRO GLY MET LYS ASP GLY LYS ALA SEQRES 7 A 169 VAL PRO ALA LEU ALA ALA GLY GLY HIS LEU ASP PRO ASN SEQRES 8 A 169 LYS THR GLY VAL HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 9 A 169 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 10 A 169 GLY THR ALA THR TYR PRO VAL LEU ALA PRO ARG LEU LYS SEQRES 11 A 169 SER LEU SER GLU VAL LYS GLN HIS ALA LEU MET ILE HIS SEQRES 12 A 169 ALA GLY GLY ASP ASN TYR SER ASP HIS PRO MET PRO LEU SEQRES 13 A 169 GLY GLY GLY GLY ALA ARG MET ALA CYS GLY VAL ILE GLU SEQRES 1 B 169 ASN MET ALA GLY MET ASN ASP LYS ALA SER MET ASN ASP SEQRES 2 B 169 LYS ALA SER MET THR VAL LYS ILE ASN GLU SER LEU PRO SEQRES 3 B 169 GLN GLY ASN GLY LYS ALA LEU GLY THR VAL THR VAL THR SEQRES 4 B 169 GLU THR ALA TYR GLY LEU LEU PHE THR PRO HIS LEU THR SEQRES 5 B 169 GLY LEU ALA PRO GLY ILE HIS GLY PHE HIS LEU HIS GLU SEQRES 6 B 169 LYS PRO SER CYS ALA PRO GLY MET LYS ASP GLY LYS ALA SEQRES 7 B 169 VAL PRO ALA LEU ALA ALA GLY GLY HIS LEU ASP PRO ASN SEQRES 8 B 169 LYS THR GLY VAL HIS LEU GLY PRO TYR ASN ASP LYS GLY SEQRES 9 B 169 HIS LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP SEQRES 10 B 169 GLY THR ALA THR TYR PRO VAL LEU ALA PRO ARG LEU LYS SEQRES 11 B 169 SER LEU SER GLU VAL LYS GLN HIS ALA LEU MET ILE HIS SEQRES 12 B 169 ALA GLY GLY ASP ASN TYR SER ASP HIS PRO MET PRO LEU SEQRES 13 B 169 GLY GLY GLY GLY ALA ARG MET ALA CYS GLY VAL ILE GLU HET ZN A1162 1 HET ZN A1163 1 HET ZN A1164 1 HET ZN A1165 1 HET ZN B1162 1 HET ZN B1163 1 HET ZN B1164 1 HET MES B1165 12 HET GOL B1166 6 HET GOL B1167 6 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 7(ZN 2+) FORMUL 10 MES C6 H13 N O4 S FORMUL 11 GOL 2(C3 H8 O3) FORMUL 13 HOH *217(H2 O) HELIX 1 1 ALA A 73 GLY A 77 5 5 HELIX 2 2 SER A 123 VAL A 127 5 5 HELIX 3 3 MET A 146 GLY A 151 5 6 HELIX 4 4 ALA B 73 GLY B 77 5 5 HELIX 5 5 SER B 123 VAL B 127 5 5 HELIX 6 6 MET B 146 GLY B 151 5 6 SHEET 1 AA 7 PHE A 53 HIS A 56 0 SHEET 2 AA 7 ALA A 131 HIS A 135 -1 O ALA A 131 N HIS A 56 SHEET 3 AA 7 ARG A 154 VAL A 159 -1 N MET A 155 O ILE A 134 SHEET 4 AA 7 SER A 8 SER A 16 -1 O ASN A 14 N CYS A 157 SHEET 5 AA 7 ASN A 21 THR A 33 -1 N GLY A 22 O GLU A 15 SHEET 6 AA 7 GLY A 36 LEU A 43 -1 O GLY A 36 N THR A 33 SHEET 7 AA 7 VAL A 116 ALA A 118 -1 O VAL A 116 N PHE A 39 SHEET 1 AB 2 GLY A 49 HIS A 51 0 SHEET 2 AB 2 LEU A 104 VAL A 106 -1 O LEU A 104 N HIS A 51 SHEET 1 AC 2 GLY A 64 LYS A 66 0 SHEET 2 AC 2 LYS A 69 VAL A 71 -1 O LYS A 69 N LYS A 66 SHEET 1 BA 7 PHE B 53 HIS B 56 0 SHEET 2 BA 7 ALA B 131 HIS B 135 -1 O ALA B 131 N HIS B 56 SHEET 3 BA 7 ARG B 154 VAL B 159 -1 N MET B 155 O ILE B 134 SHEET 4 BA 7 SER B 8 SER B 16 -1 O ASN B 14 N CYS B 157 SHEET 5 BA 7 ASN B 21 THR B 33 -1 N GLY B 22 O GLU B 15 SHEET 6 BA 7 GLY B 36 LEU B 43 -1 O GLY B 36 N THR B 33 SHEET 7 BA 7 VAL B 116 ALA B 118 -1 O VAL B 116 N PHE B 39 SHEET 1 BB 2 GLY B 49 HIS B 51 0 SHEET 2 BB 2 LEU B 104 VAL B 106 -1 O LEU B 104 N HIS B 51 SHEET 1 BC 2 GLY B 64 LYS B 66 0 SHEET 2 BC 2 LYS B 69 VAL B 71 -1 O LYS B 69 N LYS B 66 SSBOND 1 CYS A 61 CYS A 157 1555 1555 2.04 SSBOND 2 CYS B 61 CYS B 157 1555 1555 2.04 LINK OD1 ASP A 5 ZN ZN A1164 1555 1555 2.30 LINK OD2 ASP A 5 ZN ZN A1164 1555 1555 2.02 LINK ND1 HIS A 54 ZN ZN A1165 1555 1555 2.28 LINK NE2 HIS A 56 ZN ZN A1165 1555 1555 2.28 LINK ND1 HIS A 79 ZN ZN A1162 1555 1555 2.19 LINK NE2 HIS A 79 ZN ZN A1165 1555 1555 2.14 LINK ND1 HIS A 88 ZN ZN A1162 1555 1555 2.16 LINK ND1 HIS A 97 ZN ZN A1162 1555 1555 2.22 LINK OD1 ASP A 100 ZN ZN A1162 1555 1555 2.06 LINK NE2 HIS A 130 ZN ZN A1163 1555 1555 2.24 LINK NE2 HIS A 135 ZN ZN A1165 1555 1555 2.15 LINK NE2 HIS A 144 ZN ZN B1163 6664 1555 2.15 LINK ZN ZN A1163 O HOH A2090 1555 1555 2.37 LINK ZN ZN A1163 O HOH A2091 1555 1555 2.40 LINK ZN ZN A1164 O HOH A2093 1555 1555 2.35 LINK ZN ZN A1164 O HOH A2094 1555 1555 2.28 LINK ZN ZN A1164 NE2 HIS B 130 1555 3664 2.03 LINK ND1 HIS B 54 ZN ZN B1164 1555 1555 2.22 LINK NE2 HIS B 56 ZN ZN B1164 1555 1555 2.14 LINK ND1 HIS B 79 ZN ZN B1162 1555 1555 2.07 LINK NE2 HIS B 79 ZN ZN B1164 1555 1555 2.28 LINK ND1 HIS B 88 ZN ZN B1162 1555 1555 2.19 LINK ND1 HIS B 97 ZN ZN B1162 1555 1555 2.26 LINK OD1 ASP B 100 ZN ZN B1162 1555 1555 2.02 LINK NE2 HIS B 135 ZN ZN B1164 1555 1555 2.19 LINK NE2 HIS B 144 ZN ZN B1163 1555 1555 2.24 LINK ZN ZN B1163 O HOH B2118 1555 1555 2.49 LINK ZN ZN B1163 O HOH B2119 1555 1555 2.11 CISPEP 1 HIS A 144 PRO A 145 0 0.28 CISPEP 2 HIS B 144 PRO B 145 0 7.24 SITE 1 AC1 4 HIS A 79 HIS A 88 HIS A 97 ASP A 100 SITE 1 AC2 4 HIS B 79 HIS B 88 HIS B 97 ASP B 100 SITE 1 AC3 4 HIS A 130 HOH A2090 HOH A2091 HOH A2092 SITE 1 AC4 4 HIS A 144 HIS B 144 HOH B2118 HOH B2119 SITE 1 AC5 5 ASN A 4 ASP A 5 HOH A2093 HOH A2094 SITE 2 AC5 5 HIS B 130 SITE 1 AC6 4 HIS A 54 HIS A 56 HIS A 79 HIS A 135 SITE 1 AC7 4 HIS B 54 HIS B 56 HIS B 79 HIS B 135 SITE 1 AC8 9 ASN A 140 THR B 29 HIS B 42 THR B 113 SITE 2 AC8 9 PRO B 115 GOL B1167 HOH B2120 HOH B2121 SITE 3 AC8 9 HOH B2122 SITE 1 AC9 4 LEU B 46 PRO B 48 ALA B 108 HOH B2123 SITE 1 BC1 5 LYS B 6 THR B 31 LEU B 38 MES B1165 SITE 2 BC1 5 HOH B2122 CRYST1 97.546 97.546 81.810 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010252 0.005919 0.000000 0.00000 SCALE2 0.000000 0.011837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012223 0.00000 MTRIX1 1 0.400810 0.680640 0.613260 30.46413 1 MTRIX2 1 0.696470 -0.661250 0.278700 -0.22247 1 MTRIX3 1 0.595210 0.315410 -0.739080 -70.51259 1