HEADER METAL BINDING PROTEIN 29-OCT-09 2WWU TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PHD FINGER PROTEIN 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 115-483; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PNH-TRXT KEYWDS JMJC DOMAIN, EPIGENETICS, METAL-BINDING PROTEIN, HISTONE DEMETHYLASE, KEYWDS 2 METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.W.YUE,V.HOZJAN,C.COOPER,A.TUMBER,T.KROJER,J.MUNIZ,C.ALLERSTON, AUTHOR 2 E.SALAH,M.A.MCDONOUGH,F.VON DELFT,C.ARROWSMITH,J.WEIGELT,A.EDWARDS, AUTHOR 3 C.BOUNTRA,C.J.SCHOFIELD,K.L.KAVANAGH,U.OPPERMANN REVDAT 8 20-DEC-23 2WWU 1 HETSYN SHEET REVDAT 7 29-JUL-20 2WWU 1 COMPND REMARK HETNAM SITE REVDAT 6 28-MAR-18 2WWU 1 JRNL REVDAT 5 24-JAN-18 2WWU 1 JRNL REVDAT 4 05-DEC-12 2WWU 1 SOURCE AUTHOR JRNL REMARK REVDAT 4 2 1 VERSN DBREF SEQADV REVDAT 3 23-FEB-10 2WWU 1 JRNL REMARK REVDAT 2 26-JAN-10 2WWU 1 JRNL REVDAT 1 17-NOV-09 2WWU 0 JRNL AUTH W.W.YUE,V.HOZJAN,W.GE,C.LOENARZ,C.D.COOPER,C.J.SCHOFIELD, JRNL AUTH 2 K.L.KAVANAGH,U.OPPERMANN,M.A.MCDONOUGH JRNL TITL CRYSTAL STRUCTURE OF THE PHF8 JUMONJI DOMAIN, AN JRNL TITL 2 NEPSILON-METHYL LYSINE DEMETHYLASE. JRNL REF FEBS LETT. V. 584 825 2010 JRNL REFN ISSN 1873-3468 JRNL PMID 20067792 JRNL DOI 10.1016/J.FEBSLET.2009.12.055 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7643 - 4.7781 0.98 2757 136 0.1554 0.1527 REMARK 3 2 4.7781 - 3.7942 1.00 2701 149 0.1308 0.1624 REMARK 3 3 3.7942 - 3.3150 1.00 2720 148 0.1602 0.2213 REMARK 3 4 3.3150 - 3.0121 1.00 2672 139 0.1802 0.2205 REMARK 3 5 3.0121 - 2.7964 1.00 2692 134 0.1950 0.2123 REMARK 3 6 2.7964 - 2.6316 1.00 2688 144 0.1871 0.2751 REMARK 3 7 2.6316 - 2.4998 1.00 2641 149 0.1927 0.2409 REMARK 3 8 2.4998 - 2.3910 1.00 2708 138 0.1982 0.2593 REMARK 3 9 2.3910 - 2.2990 1.00 2646 143 0.2107 0.2474 REMARK 3 10 2.2990 - 2.2197 1.00 2668 146 0.2399 0.2869 REMARK 3 11 2.2197 - 2.1503 1.00 2631 156 0.2691 0.3280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 48.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3057 REMARK 3 ANGLE : 1.029 4143 REMARK 3 CHIRALITY : 0.066 465 REMARK 3 PLANARITY : 0.004 525 REMARK 3 DIHEDRAL : 16.640 1080 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 116:210) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9627 45.9359 10.7862 REMARK 3 T TENSOR REMARK 3 T11: 0.3361 T22: 0.3773 REMARK 3 T33: 0.4165 T12: 0.0240 REMARK 3 T13: -0.1276 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.4555 L22: 0.4391 REMARK 3 L33: 1.3186 L12: 0.2417 REMARK 3 L13: 0.8728 L23: -0.1071 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.2359 S13: 0.3245 REMARK 3 S21: -0.2049 S22: -0.1259 S23: 0.0372 REMARK 3 S31: -0.0230 S32: 0.2467 S33: 0.2063 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 211:236) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0771 51.7621 9.4966 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.4383 REMARK 3 T33: 0.6234 T12: 0.0138 REMARK 3 T13: -0.2953 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.5633 L22: 0.4123 REMARK 3 L33: 0.3786 L12: -0.3441 REMARK 3 L13: 0.3365 L23: -0.0113 REMARK 3 S TENSOR REMARK 3 S11: -0.2740 S12: -0.2274 S13: 0.4899 REMARK 3 S21: 0.0194 S22: -0.0365 S23: 0.4017 REMARK 3 S31: -0.1090 S32: -0.2589 S33: 0.1925 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 237:332) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6049 47.3959 19.5031 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.3275 REMARK 3 T33: 0.4310 T12: 0.0112 REMARK 3 T13: -0.0836 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 2.4023 L22: 0.5543 REMARK 3 L33: 1.3350 L12: 0.0659 REMARK 3 L13: -0.2279 L23: 0.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.1675 S13: 0.5269 REMARK 3 S21: -0.0431 S22: -0.0506 S23: 0.2734 REMARK 3 S31: -0.0291 S32: 0.0487 S33: 0.0730 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 333:366) REMARK 3 ORIGIN FOR THE GROUP (A): 62.1103 47.4361 10.6387 REMARK 3 T TENSOR REMARK 3 T11: 0.3029 T22: 0.3794 REMARK 3 T33: 0.4023 T12: 0.0008 REMARK 3 T13: -0.0990 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.9471 L22: 1.0366 REMARK 3 L33: 1.1713 L12: -0.7723 REMARK 3 L13: -0.1569 L23: -0.2138 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: 0.0993 S13: 0.3755 REMARK 3 S21: -0.1439 S22: -0.1524 S23: 0.1087 REMARK 3 S31: 0.1917 S32: 0.3366 S33: 0.1037 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 367:478) REMARK 3 ORIGIN FOR THE GROUP (A): 61.7209 37.8846 38.1178 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.3333 REMARK 3 T33: 0.3295 T12: -0.0139 REMARK 3 T13: -0.0147 T23: -0.0674 REMARK 3 L TENSOR REMARK 3 L11: 0.5273 L22: 1.9142 REMARK 3 L33: 0.8184 L12: 0.1733 REMARK 3 L13: 0.1729 L23: -0.4071 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: -0.0130 S13: -0.0815 REMARK 3 S21: 0.1635 S22: -0.1526 S23: -0.0229 REMARK 3 S31: -0.0901 S32: 0.0659 S33: 0.0413 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS DIFFERENCE FO-FC DENSITY AT REMARK 3 THE ACTIVE SITE. THE IDENTITY OF THE BOUND LIGAND IS NOT KNOWN, REMARK 3 AND HENCE NOT MODELLED. REMARK 4 REMARK 4 2WWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 106.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YU1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M (NH4)2SO4, 0.1 M SODIUM ACETATE REMARK 280 PH 4.25 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.49000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.49000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 75.49000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 75.49000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 75.49000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 75.49000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 75.49000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 75.49000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 75.49000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 75.49000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.49000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 75.49000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 75.49000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.49000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 75.49000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 75.49000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 75.49000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 75.49000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 75.49000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 75.49000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 75.49000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 75.49000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 75.49000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -218.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 150.98000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.49000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1480 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2026 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 77 REMARK 465 MET A 78 REMARK 465 PRO A 79 REMARK 465 ILE A 443 REMARK 465 PHE A 444 REMARK 465 GLN A 445 REMARK 465 GLN A 446 REMARK 465 ASN A 447 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 81 CD CE NZ REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 155 CD CE NZ REMARK 470 LYS A 171 CE NZ REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 186 CD CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 LYS A 212 CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 ARG A 386 CD NE CZ NH1 NH2 REMARK 470 ARG A 387 NE CZ NH1 NH2 REMARK 470 LYS A 398 CE NZ REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 LYS A 431 CE NZ REMARK 470 ASP A 442 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 96 -168.45 67.86 REMARK 500 SER A 120 169.84 65.38 REMARK 500 SER A 120 169.74 65.53 REMARK 500 VAL A 162 5.83 -64.55 REMARK 500 THR A 163 37.60 -71.69 REMARK 500 ARG A 164 47.14 26.89 REMARK 500 GLN A 165 -73.48 -111.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 999 REMARK 999 SEQUENCE REMARK 999 GENBANK ACCESSION CODE 32698700 DBREF 2WWU A 79 447 UNP Q9UPP1 PHF8_HUMAN 115 483 SEQADV 2WWU SER A 77 UNP Q9UPP1 EXPRESSION TAG SEQADV 2WWU MET A 78 UNP Q9UPP1 EXPRESSION TAG SEQRES 1 A 371 SER MET PRO VAL LYS THR GLY SER PRO THR PHE VAL ARG SEQRES 2 A 371 GLU LEU ARG SER ARG THR PHE ASP SER SER ASP GLU VAL SEQRES 3 A 371 ILE LEU LYS PRO THR GLY ASN GLN LEU THR VAL GLU PHE SEQRES 4 A 371 LEU GLU GLU ASN SER PHE SER VAL PRO ILE LEU VAL LEU SEQRES 5 A 371 LYS LYS ASP GLY LEU GLY MET THR LEU PRO SER PRO SER SEQRES 6 A 371 PHE THR VAL ARG ASP VAL GLU HIS TYR VAL GLY SER ASP SEQRES 7 A 371 LYS GLU ILE ASP VAL ILE ASP VAL THR ARG GLN ALA ASP SEQRES 8 A 371 CYS LYS MET LYS LEU GLY ASP PHE VAL LYS TYR TYR TYR SEQRES 9 A 371 SER GLY LYS ARG GLU LYS VAL LEU ASN VAL ILE SER LEU SEQRES 10 A 371 GLU PHE SER ASP THR ARG LEU SER ASN LEU VAL GLU THR SEQRES 11 A 371 PRO LYS ILE VAL ARG LYS LEU SER TRP VAL GLU ASN LEU SEQRES 12 A 371 TRP PRO GLU GLU CYS VAL PHE GLU ARG PRO ASN VAL GLN SEQRES 13 A 371 LYS TYR CYS LEU MET SER VAL ARG ASP SER TYR THR ASP SEQRES 14 A 371 PHE HIS ILE ASP PHE GLY GLY THR SER VAL TRP TYR HIS SEQRES 15 A 371 VAL LEU LYS GLY GLU LYS ILE PHE TYR LEU ILE ARG PRO SEQRES 16 A 371 THR ASN ALA ASN LEU THR LEU PHE GLU CYS TRP SER SER SEQRES 17 A 371 SER SER ASN GLN ASN GLU MET PHE PHE GLY ASP GLN VAL SEQRES 18 A 371 ASP LYS CYS TYR LYS CYS SER VAL LYS GLN GLY GLN THR SEQRES 19 A 371 LEU PHE ILE PRO THR GLY TRP ILE HIS ALA VAL LEU THR SEQRES 20 A 371 PRO VAL ASP CYS LEU ALA PHE GLY GLY ASN PHE LEU HIS SEQRES 21 A 371 SER LEU ASN ILE GLU MET GLN LEU LYS ALA TYR GLU ILE SEQRES 22 A 371 GLU LYS ARG LEU SER THR ALA ASP LEU PHE ARG PHE PRO SEQRES 23 A 371 ASN PHE GLU THR ILE CYS TRP TYR VAL GLY LYS HIS ILE SEQRES 24 A 371 LEU ASP ILE PHE ARG GLY LEU ARG GLU ASN ARG ARG HIS SEQRES 25 A 371 PRO ALA SER TYR LEU VAL HIS GLY GLY LYS ALA LEU ASN SEQRES 26 A 371 LEU ALA PHE ARG ALA TRP THR ARG LYS GLU ALA LEU PRO SEQRES 27 A 371 ASP HIS GLU ASP GLU ILE PRO GLU THR VAL ARG THR VAL SEQRES 28 A 371 GLN LEU ILE LYS ASP LEU ALA ARG GLU ILE ARG LEU VAL SEQRES 29 A 371 GLU ASP ILE PHE GLN GLN ASN HET SO4 A1479 5 HET SO4 A1480 5 HET SO4 A1481 5 HET SO4 A1482 5 HET SO4 A1483 5 HET SO4 A1484 5 HET SO4 A1485 5 HET ACT A1486 4 HET ACT A1487 4 HET ACT A1488 4 HET ACT A1489 4 HET ACT A1490 4 HET NI A1491 1 HET BGC A1492 12 HET BGC A1493 12 HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM NI NICKEL (II) ION HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 ACT 5(C2 H3 O2 1-) FORMUL 14 NI NI 2+ FORMUL 15 BGC 2(C6 H12 O6) FORMUL 17 HOH *168(H2 O) HELIX 1 1 SER A 84 ARG A 94 1 11 HELIX 2 2 ASP A 100 VAL A 102 5 3 HELIX 3 3 THR A 112 SER A 120 1 9 HELIX 4 4 THR A 143 GLY A 152 1 10 HELIX 5 5 LEU A 172 GLY A 182 1 11 HELIX 6 6 THR A 198 VAL A 204 5 7 HELIX 7 7 PRO A 207 SER A 214 1 8 HELIX 8 8 SER A 214 TRP A 220 1 7 HELIX 9 9 ASP A 249 THR A 253 5 5 HELIX 10 10 THR A 272 SER A 285 1 14 HELIX 11 11 ASN A 287 MET A 291 5 5 HELIX 12 12 PHE A 292 VAL A 297 5 6 HELIX 13 13 ASN A 339 SER A 354 1 16 HELIX 14 14 ASN A 363 ASN A 385 1 23 HELIX 15 15 ALA A 390 THR A 408 1 19 HELIX 16 16 ALA A 412 HIS A 416 5 5 HELIX 17 17 HIS A 416 ILE A 420 5 5 HELIX 18 18 ARG A 425 LEU A 439 1 15 SHEET 1 AA 4 ASP A 97 SER A 98 0 SHEET 2 AA 4 TYR A 301 LYS A 306 1 N LYS A 302 O ASP A 97 SHEET 3 AA 4 SER A 254 ILE A 269 -1 O LYS A 264 N VAL A 305 SHEET 4 AA 4 ILE A 318 PHE A 334 -1 O ILE A 318 N ILE A 269 SHEET 1 AB 2 ASP A 97 SER A 98 0 SHEET 2 AB 2 ILE A 125 VAL A 127 -1 O ILE A 125 N PHE A 312 CRYST1 150.980 150.980 150.980 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006623 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006623 0.00000