HEADER OXIDOREDUCTASE 20-NOV-09 2WZ0 TITLE L38V SOD1 MUTANT COMPLEXED WITH ANILINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, F; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS OXIDOREDUCTASE, DISEASE MUTATION, AMYOTROPHIC LATERAL SCLEROSIS, KEYWDS 2 ANTIOXIDANT EXPDTA X-RAY DIFFRACTION AUTHOR S.ANTONYUK,R.W.STRANGE,S.S.HASNAIN REVDAT 3 20-DEC-23 2WZ0 1 REMARK LINK REVDAT 2 12-JUL-17 2WZ0 1 REVDAT 1 08-DEC-10 2WZ0 0 JRNL AUTH S.ANTONYUK,R.W.STRANGE,S.S.HASNAIN JRNL TITL STRUCTURAL DISCOVERY OF SMALL MOLECULE BINDING SITES IN JRNL TITL 2 CU-ZN HUMAN SUPEROXIDE DISMUTASE FAMILIAL AMYOTROPHIC JRNL TITL 3 LATERAL SCLEROSIS MUTANTS PROVIDES INSIGHTS FOR LEAD JRNL TITL 4 OPTIMIZATION. JRNL REF J.MED.CHEM. V. 53 1402 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20067275 JRNL DOI 10.1021/JM9017948 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0106 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 25520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1360 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1612 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2218 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2351 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1519 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3186 ; 1.746 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3761 ; 1.560 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 6.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;41.689 ;25.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;14.562 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.208 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2714 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 418 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1524 ; 1.145 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 660 ; 0.324 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2439 ; 1.917 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 827 ; 2.525 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 740 ; 3.860 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2WZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1290041782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2C9V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM NACL,3.0 M AMMONIUM SULPHATE, REMARK 280 100 MM TRIS-HCL PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.13050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 39 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN F, LEU 39 TO VAL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2118 O HOH A 2119 1.75 REMARK 500 NZ LYS F 128 O HOH F 2142 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 125 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP F 83 CB - CG - OD1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP F 90 CB - CG - OD1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP F 90 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP F 125 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 19.46 58.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 154A ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 105.9 REMARK 620 3 HIS A 63 NE2 79.6 109.1 REMARK 620 4 HIS A 120 NE2 81.6 102.7 146.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 154 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 141.9 REMARK 620 3 HIS A 120 NE2 101.5 115.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 104.9 REMARK 620 3 HIS A 80 ND1 115.9 118.0 REMARK 620 4 ASP A 83 OD1 103.6 97.8 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU F 154 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 46 ND1 REMARK 620 2 HIS F 48 NE2 141.4 REMARK 620 3 HIS F 120 NE2 101.8 116.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 63 ND1 REMARK 620 2 HIS F 71 ND1 104.5 REMARK 620 3 HIS F 80 ND1 115.0 119.0 REMARK 620 4 ASP F 83 OD1 103.6 95.8 116.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 154A REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZZT A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU F 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS F 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DSN F 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZZT F 158 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PTZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN CU, ZN SUPEROXIDE DISMUTASE,FAMILIAL REMARK 900 AMYOTROPHIC LATERAL SCLEROSIS (FALS) MUTANT H43R REMARK 900 RELATED ID: 1OEZ RELATED DB: PDB REMARK 900 ZN HIS46ARG MUTANT OF HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1AZV RELATED DB: PDB REMARK 900 FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN) REMARK 900 RELATED ID: 1HL4 RELATED DB: PDB REMARK 900 THE STRUCTURE OF APO TYPE HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2VR6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.3 A RESOLUTION REMARK 900 RELATED ID: 1OZU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAMILIAL ALS MUTANT S134N OF HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE ( CUZNSOD) TO 1.3A RESOLUTION REMARK 900 RELATED ID: 2C9V RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION STRUCTURE OF CU-ZN HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1PU0 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN CU,ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1FUN RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH LYS 136 REPLACED BY GLU, CYS 6 REMARK 900 REPLACED BY ALA AND CYS 111 REPLACED BY SER (K136E, C6A, C111S) REMARK 900 RELATED ID: 1SOS RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED BY ALA AND CYS 111 REMARK 900 REPLACED BY SER (C6A, C111S) REMARK 900 RELATED ID: 1N19 RELATED DB: PDB REMARK 900 STRUCTURE OF THE HSOD A4V MUTANT REMARK 900 RELATED ID: 1P1V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FALS-ASSOCIATED HUMAN COPPER-ZINCSUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) MUTANT D125H TO 1.4A REMARK 900 RELATED ID: 2WKO RELATED DB: PDB REMARK 900 STRUCTURE OF METAL LOADED PATHOGENIC SOD1 MUTANT G93A. REMARK 900 RELATED ID: 1L3N RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED DIMERIC COPPER ZINC SOD:THE REMARK 900 STRUCTURAL EFFECTS OF DIMERIZATION REMARK 900 RELATED ID: 2AF2 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DISULFIDE REDUCED AND COPPER DEPLETEDHUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1UXL RELATED DB: PDB REMARK 900 I113T MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 2VR8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.36 A RESOLUTION REMARK 900 RELATED ID: 1RK7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF APO CU,ZN SUPEROXIDE DISMUTASE: ROLEOF METAL REMARK 900 IONS IN PROTEIN FOLDING REMARK 900 RELATED ID: 2VR7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE (CUZNSOD) AT 1.58 A RESOLUTION REMARK 900 RELATED ID: 2C9S RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF ZN- ZN HUMAN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 1MFM RELATED DB: PDB REMARK 900 MONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2V0A RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION CRYSTAL STRUCTURE OF HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 4SOD RELATED DB: PDB REMARK 900 CU,ZN SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REPLACED BY ALA AND REMARK 900 CYS 111 REPLACED BY SER (C6A,C111S) WITH AN 18-RESIDUE HEPARIN- REMARK 900 BINDING PEPTIDE FUSED TO THE C- TERMINUS (THEORETICAL MODEL) REMARK 900 RELATED ID: 1DSW RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF A MONOMERIC, REDUCED FORM OFHUMAN COPPER, REMARK 900 ZINC SUPEROXIDE DISMUTASE BEARING THE SAMECHARGE AS THE NATIVE REMARK 900 PROTEIN REMARK 900 RELATED ID: 1OZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-H46R FAMILIAL ALS MUTANT HUMAN CU,ZN REMARK 900 SUPEROXIDE DISMUTASE ( CUZNSOD) TO 2.5A RESOLUTION REMARK 900 RELATED ID: 1KMG RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF MONOMERIC COPPER- FREE SUPEROXIDEDISMUTASE REMARK 900 RELATED ID: 1N18 RELATED DB: PDB REMARK 900 THERMOSTABLE MUTANT OF HUMAN SUPEROXIDE DISMUTASE, C6A,C111S REMARK 900 RELATED ID: 1BA9 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED MONOMERIC SUPEROXIDE DISMUTASE, REMARK 900 NMR, 36 STRUCTURES REMARK 900 RELATED ID: 2C9U RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF AS- ISOLATED CU-ZN HUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1HL5 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HOLO TYPE HUMAN CU, ZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1SPD RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1UXM RELATED DB: PDB REMARK 900 A4V MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 2WYT RELATED DB: PDB REMARK 900 1.0 A RESOLUTION STRUCTURE OF L38V SOD1 MUTANT REMARK 900 RELATED ID: 2WYZ RELATED DB: PDB REMARK 900 L38V SOD1 MUTANT COMPLEXED WITH UMP DBREF 2WZ0 A 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 2WZ0 F 1 153 UNP P00441 SODC_HUMAN 2 154 SEQADV 2WZ0 VAL A 38 UNP P00441 LEU 39 ENGINEERED MUTATION SEQADV 2WZ0 VAL F 38 UNP P00441 LEU 39 ENGINEERED MUTATION SEQRES 1 A 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY VAL THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 F 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 F 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 F 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY VAL THR SEQRES 4 F 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 F 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 F 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 F 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 F 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 F 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 F 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 F 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 F 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET CU A 154 1 HET ZN A 154A 1 HET ZN A 155 1 HET SO4 A 156 5 HET SO4 A 157 5 HET ZZT A 158 10 HET CU F 154 1 HET ZN F 155 1 HET DMS F 156 4 HET DSN F 157 7 HET ZZT F 158 10 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM ZZT 2-METHOXY-5-METHYLANILINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM DSN D-SERINE FORMUL 3 CU 2(CU 2+) FORMUL 4 ZN 3(ZN 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 ZZT 2(C8 H11 N O) FORMUL 11 DMS C2 H6 O S FORMUL 12 DSN C3 H7 N O3 FORMUL 14 HOH *307(H2 O) HELIX 1 1 GLY A 56 GLY A 61 5 6 HELIX 2 2 SER A 107 HIS A 110 5 4 HELIX 3 3 ASN A 131 THR A 135 5 5 HELIX 4 4 GLY F 56 GLY F 61 5 6 HELIX 5 5 GLU F 132 LYS F 136 5 5 SHEET 1 AA 5 ALA A 95 ASP A 101 0 SHEET 2 AA 5 VAL A 29 LYS A 36 -1 O VAL A 29 N ASP A 101 SHEET 3 AA 5 GLN A 15 GLN A 22 -1 O GLN A 15 N LYS A 36 SHEET 4 AA 5 THR A 2 LYS A 9 -1 O THR A 2 N GLN A 22 SHEET 5 AA 5 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 AB 4 ASP A 83 ALA A 89 0 SHEET 2 AB 4 GLY A 41 HIS A 48 -1 O GLY A 41 N ALA A 89 SHEET 3 AB 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AB 4 ARG A 143 VAL A 148 -1 N LEU A 144 O VAL A 119 SHEET 1 FA 5 ALA F 95 ASP F 101 0 SHEET 2 FA 5 VAL F 29 LYS F 36 -1 O VAL F 29 N ASP F 101 SHEET 3 FA 5 VAL F 14 GLN F 22 -1 O GLN F 15 N LYS F 36 SHEET 4 FA 5 THR F 2 GLY F 10 -1 O THR F 2 N GLN F 22 SHEET 5 FA 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5 SHEET 1 FB 4 ASP F 83 ALA F 89 0 SHEET 2 FB 4 GLY F 41 HIS F 48 -1 O GLY F 41 N ALA F 89 SHEET 3 FB 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48 SHEET 4 FB 4 ARG F 143 VAL F 148 -1 N LEU F 144 O VAL F 119 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.10 SSBOND 2 CYS F 57 CYS F 146 1555 1555 2.14 LINK ND1 HIS A 46 ZN B ZN A 154A 1555 1555 2.57 LINK ND1 HIS A 46 CU A CU A 154 1555 1555 2.01 LINK NE2 HIS A 48 ZN B ZN A 154A 1555 1555 2.19 LINK NE2 HIS A 48 CU A CU A 154 1555 1555 2.02 LINK NE2 HIS A 63 ZN B ZN A 154A 1555 1555 2.58 LINK ND1 HIS A 63 ZN ZN A 155 1555 1555 2.05 LINK ND1 HIS A 71 ZN ZN A 155 1555 1555 2.13 LINK ND1 HIS A 80 ZN ZN A 155 1555 1555 1.87 LINK OD1 ASP A 83 ZN ZN A 155 1555 1555 2.00 LINK NE2 HIS A 120 ZN B ZN A 154A 1555 1555 2.23 LINK NE2 HIS A 120 CU A CU A 154 1555 1555 2.06 LINK ND1 HIS F 46 CU CU F 154 1555 1555 2.09 LINK NE2 HIS F 48 CU CU F 154 1555 1555 1.99 LINK ND1 HIS F 63 ZN ZN F 155 1555 1555 2.09 LINK ND1 HIS F 71 ZN ZN F 155 1555 1555 2.09 LINK ND1 HIS F 80 ZN ZN F 155 1555 1555 1.94 LINK OD1 ASP F 83 ZN ZN F 155 1555 1555 1.84 LINK NE2 HIS F 120 CU CU F 154 1555 1555 2.01 CISPEP 1 GLY F 12 PRO F 13 0 4.64 SITE 1 AC1 6 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 2 AC1 6 HOH A2124 HOH A2139 SITE 1 AC2 4 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 1 AC3 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC4 5 SER A 142 ARG A 143 HOH A2129 HOH A2140 SITE 2 AC4 5 HOH A2141 SITE 1 AC5 7 HOH A2142 HOH A2143 HOH A2144 THR F 137 SITE 2 AC5 7 ASN F 139 ALA F 140 GLY F 141 SITE 1 AC6 3 TRP A 32 SER A 98 HOH A2147 SITE 1 AC7 4 HIS F 46 HIS F 48 HIS F 63 HIS F 120 SITE 1 AC8 4 HIS F 63 HIS F 71 HIS F 80 ASP F 83 SITE 1 AC9 6 GLY F 10 ASP F 11 CYS F 57 ARG F 143 SITE 2 AC9 6 LEU F 144 DSN F 157 SITE 1 BC1 5 GLY F 56 CYS F 57 THR F 58 DMS F 156 SITE 2 BC1 5 HOH F2159 SITE 1 BC2 6 LYS F 30 VAL F 31 TRP F 32 SER F 98 SITE 2 BC2 6 ILE F 99 HOH F2160 CRYST1 39.006 68.261 50.988 90.00 106.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025637 0.000000 0.007424 0.00000 SCALE2 0.000000 0.014650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020418 0.00000