HEADER LYASE 23-NOV-09 2WZ1 TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN SOLUBLE GUANYLATE CYCLASE 1 TITLE 2 BETA 3. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 994-1205; COMPND 5 SYNONYM: GUANYLATE CYCLASE 1 BETA 3, GCS-BETA-1, SOLUBLE GUANYLATE COMPND 6 CYCLASE SMALL SUBUNIT, GCS-BETA-3; COMPND 7 EC: 4.6.1.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3 PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHF KEYWDS LYASE, GUCY1, METAL-BINDING, CGMP BIOSYNTHESIS, NUCLEOTIDE-BINDING, KEYWDS 2 CYCLASE, GUCY1B3, GTP-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.K.ALLERSTON,C.D.O.COOPER,J.MUNIZ,A.C.W.PIKE,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,C.BOUNTRA,O.GILEADI REVDAT 8 20-DEC-23 2WZ1 1 REMARK REVDAT 7 08-MAY-19 2WZ1 1 REMARK REVDAT 6 24-JAN-18 2WZ1 1 JRNL REVDAT 5 10-APR-13 2WZ1 1 JRNL REMARK REVDAT 4 13-JUL-11 2WZ1 1 VERSN REVDAT 3 09-FEB-11 2WZ1 1 REMARK REVDAT 2 26-JAN-10 2WZ1 1 REMARK REVDAT 1 01-DEC-09 2WZ1 0 JRNL AUTH C.K.ALLERSTON,F.VON DELFT,O.GILEADI JRNL TITL CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF HUMAN SOLUBLE JRNL TITL 2 GUANYLATE CYCLASE. JRNL REF PLOS ONE V. 8 57644 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23505436 JRNL DOI 10.1371/JOURNAL.PONE.0057644 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2637 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3626 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.370 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3207 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2197 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4331 ; 1.585 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5374 ; 1.238 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 5.849 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;36.954 ;23.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 570 ;14.659 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.831 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3506 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 642 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1974 ; 3.742 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 805 ; 1.131 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3224 ; 5.452 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1233 ; 8.715 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1106 ;12.010 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 412 A 610 REMARK 3 ORIGIN FOR THE GROUP (A): -37.1526 -10.7107 -13.8246 REMARK 3 T TENSOR REMARK 3 T11: 0.0075 T22: 0.0206 REMARK 3 T33: 0.0140 T12: 0.0053 REMARK 3 T13: 0.0012 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.2156 L22: 1.8888 REMARK 3 L33: 2.1282 L12: 0.1997 REMARK 3 L13: 0.4169 L23: 0.1773 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: 0.0014 S13: 0.0066 REMARK 3 S21: -0.0235 S22: 0.0086 S23: -0.1588 REMARK 3 S31: 0.0326 S32: 0.1890 S33: -0.0349 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 412 B 608 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1851 -19.6296 -19.6586 REMARK 3 T TENSOR REMARK 3 T11: 0.0406 T22: 0.0346 REMARK 3 T33: 0.0198 T12: -0.0176 REMARK 3 T13: 0.0146 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.3964 L22: 2.0511 REMARK 3 L33: 2.8682 L12: 0.0686 REMARK 3 L13: -0.0739 L23: -0.0572 REMARK 3 S TENSOR REMARK 3 S11: -0.0623 S12: -0.0783 S13: -0.0786 REMARK 3 S21: 0.1698 S22: -0.0019 S23: 0.1699 REMARK 3 S31: 0.1244 S32: -0.1275 S33: 0.0642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2WZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1290041774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49220 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ET6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CONCENTRATED TO 12 MG/ML REMARK 280 IN PURIFICATION BUFFER (10MM HEPES, 500MM NACL, 5% GLYCEROL, 10% REMARK 280 GALACTOSE, 0.5MM TCEP)AND SET UP IN SITTING DROP IN A 1:2 RATIO REMARK 280 WITH HAMPTON INDEX SCREEN - B8 (1.4M TRI-SODIUM CITRATE REMARK 280 DIHYDRATE, 0.1M HEPES, PH 7.5)., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.79500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.19000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.79500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.19000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.01500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.79500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.19000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.01500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.79500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.19000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 408 REMARK 465 LYS A 409 REMARK 465 ARG A 410 REMARK 465 PRO A 411 REMARK 465 GLY A 440 REMARK 465 GLU A 441 REMARK 465 THR A 611 REMARK 465 GLU A 612 REMARK 465 GLU A 613 REMARK 465 THR A 614 REMARK 465 LYS A 615 REMARK 465 GLN A 616 REMARK 465 ASP A 617 REMARK 465 ASP A 618 REMARK 465 ASP A 619 REMARK 465 ALA A 620 REMARK 465 GLU A 621 REMARK 465 ASN A 622 REMARK 465 LEU A 623 REMARK 465 TYR A 624 REMARK 465 PHE A 625 REMARK 465 GLN A 626 REMARK 465 HIS B 408 REMARK 465 LYS B 409 REMARK 465 ARG B 410 REMARK 465 PRO B 411 REMARK 465 GLY B 440 REMARK 465 THR B 609 REMARK 465 GLY B 610 REMARK 465 THR B 611 REMARK 465 GLU B 612 REMARK 465 GLU B 613 REMARK 465 THR B 614 REMARK 465 LYS B 615 REMARK 465 GLN B 616 REMARK 465 ASP B 617 REMARK 465 ASP B 618 REMARK 465 ASP B 619 REMARK 465 ALA B 620 REMARK 465 GLU B 621 REMARK 465 ASN B 622 REMARK 465 LEU B 623 REMARK 465 TYR B 624 REMARK 465 PHE B 625 REMARK 465 GLN B 626 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 415 CE NZ REMARK 470 VAL B 412 CG1 CG2 REMARK 470 LYS B 436 CD CE NZ REMARK 470 GLU B 441 CG CD OE1 OE2 REMARK 470 GLU B 515 CG CD OE1 OE2 REMARK 470 MET B 537 SD CE REMARK 470 LYS B 593 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 574 O HOH A 2110 2.03 REMARK 500 OE1 GLU A 505 O HOH A 2064 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2098 O HOH B 2098 3554 1.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 571 CB CYS A 571 SG -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 456 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 494 CB - CG - CD ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG A 494 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 494 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 494 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 494 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 587 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 438 75.37 -68.88 REMARK 500 HIS A 491 40.57 -103.81 REMARK 500 HIS A 491 40.57 -103.48 REMARK 500 ARG A 587 -60.99 -92.48 REMARK 500 HIS B 437 51.33 -108.27 REMARK 500 ASP B 513 24.86 49.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2008 DISTANCE = 5.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1612 DBREF 2WZ1 A 408 619 UNP Q02153 GCYB1_HUMAN 994 1205 DBREF 2WZ1 A 620 626 PDB 2WZ1 2WZ1 620 626 DBREF 2WZ1 B 408 619 UNP Q02153 GCYB1_HUMAN 994 1205 DBREF 2WZ1 B 620 626 PDB 2WZ1 2WZ1 620 626 SEQRES 1 A 219 HIS LYS ARG PRO VAL PRO ALA LYS ARG TYR ASP ASN VAL SEQRES 2 A 219 THR ILE LEU PHE SER GLY ILE VAL GLY PHE ASN ALA PHE SEQRES 3 A 219 CYS SER LYS HIS ALA SER GLY GLU GLY ALA MET LYS ILE SEQRES 4 A 219 VAL ASN LEU LEU ASN ASP LEU TYR THR ARG PHE ASP THR SEQRES 5 A 219 LEU THR ASP SER ARG LYS ASN PRO PHE VAL TYR LYS VAL SEQRES 6 A 219 GLU THR VAL GLY ASP LYS TYR MET THR VAL SER GLY LEU SEQRES 7 A 219 PRO GLU PRO CYS ILE HIS HIS ALA ARG SER ILE CYS HIS SEQRES 8 A 219 LEU ALA LEU ASP MET MET GLU ILE ALA GLY GLN VAL GLN SEQRES 9 A 219 VAL ASP GLY GLU SER VAL GLN ILE THR ILE GLY ILE HIS SEQRES 10 A 219 THR GLY GLU VAL VAL THR GLY VAL ILE GLY GLN ARG MET SEQRES 11 A 219 PRO ARG TYR CYS LEU PHE GLY ASN THR VAL ASN LEU THR SEQRES 12 A 219 SER ARG THR GLU THR THR GLY GLU LYS GLY LYS ILE ASN SEQRES 13 A 219 VAL SER GLU TYR THR TYR ARG CYS LEU MET SER PRO GLU SEQRES 14 A 219 ASN SER ASP PRO GLN PHE HIS LEU GLU HIS ARG GLY PRO SEQRES 15 A 219 VAL SER MET LYS GLY LYS LYS GLU PRO MET GLN VAL TRP SEQRES 16 A 219 PHE LEU SER ARG LYS ASN THR GLY THR GLU GLU THR LYS SEQRES 17 A 219 GLN ASP ASP ASP ALA GLU ASN LEU TYR PHE GLN SEQRES 1 B 219 HIS LYS ARG PRO VAL PRO ALA LYS ARG TYR ASP ASN VAL SEQRES 2 B 219 THR ILE LEU PHE SER GLY ILE VAL GLY PHE ASN ALA PHE SEQRES 3 B 219 CYS SER LYS HIS ALA SER GLY GLU GLY ALA MET LYS ILE SEQRES 4 B 219 VAL ASN LEU LEU ASN ASP LEU TYR THR ARG PHE ASP THR SEQRES 5 B 219 LEU THR ASP SER ARG LYS ASN PRO PHE VAL TYR LYS VAL SEQRES 6 B 219 GLU THR VAL GLY ASP LYS TYR MET THR VAL SER GLY LEU SEQRES 7 B 219 PRO GLU PRO CYS ILE HIS HIS ALA ARG SER ILE CYS HIS SEQRES 8 B 219 LEU ALA LEU ASP MET MET GLU ILE ALA GLY GLN VAL GLN SEQRES 9 B 219 VAL ASP GLY GLU SER VAL GLN ILE THR ILE GLY ILE HIS SEQRES 10 B 219 THR GLY GLU VAL VAL THR GLY VAL ILE GLY GLN ARG MET SEQRES 11 B 219 PRO ARG TYR CYS LEU PHE GLY ASN THR VAL ASN LEU THR SEQRES 12 B 219 SER ARG THR GLU THR THR GLY GLU LYS GLY LYS ILE ASN SEQRES 13 B 219 VAL SER GLU TYR THR TYR ARG CYS LEU MET SER PRO GLU SEQRES 14 B 219 ASN SER ASP PRO GLN PHE HIS LEU GLU HIS ARG GLY PRO SEQRES 15 B 219 VAL SER MET LYS GLY LYS LYS GLU PRO MET GLN VAL TRP SEQRES 16 B 219 PHE LEU SER ARG LYS ASN THR GLY THR GLU GLU THR LYS SEQRES 17 B 219 GLN ASP ASP ASP ALA GLU ASN LEU TYR PHE GLN HET EDO A1611 4 HET EDO A1612 4 HET EDO B1609 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 HOH *289(H2 O) HELIX 1 1 GLY A 429 HIS A 437 1 9 HELIX 2 2 GLY A 442 ASP A 462 1 21 HELIX 3 3 HIS A 491 GLY A 508 1 18 HELIX 4 4 GLY A 544 THR A 556 1 13 HELIX 5 5 GLU A 566 LEU A 572 1 7 HELIX 6 6 GLY B 429 SER B 435 1 7 HELIX 7 7 GLU B 441 ASP B 462 1 22 HELIX 8 8 HIS B 491 VAL B 510 1 20 HELIX 9 9 GLY B 544 THR B 556 1 13 HELIX 10 10 GLU B 566 MET B 573 1 8 SHEET 1 AA 5 TYR A 470 VAL A 472 0 SHEET 2 AA 5 TYR A 479 SER A 483 -1 O MET A 480 N VAL A 472 SHEET 3 AA 5 LYS A 415 ILE A 427 -1 O THR A 421 N SER A 483 SHEET 4 AA 5 ILE A 519 ILE A 533 -1 O THR A 520 N GLY A 426 SHEET 5 AA 5 ARG A 539 PHE A 543 1 O ARG A 539 N ILE A 533 SHEET 1 AB 7 TYR A 470 VAL A 472 0 SHEET 2 AB 7 TYR A 479 SER A 483 -1 O MET A 480 N VAL A 472 SHEET 3 AB 7 LYS A 415 ILE A 427 -1 O THR A 421 N SER A 483 SHEET 4 AB 7 ILE A 519 ILE A 533 -1 O THR A 520 N GLY A 426 SHEET 5 AB 7 ILE A 562 SER A 565 1 O ASN A 563 N ILE A 523 SHEET 6 AB 7 MET A 599 ARG A 606 -1 O TRP A 602 N VAL A 564 SHEET 7 AB 7 PHE A 582 VAL A 590 -1 O HIS A 583 N SER A 605 SHEET 1 AC 2 ARG A 539 PHE A 543 0 SHEET 2 AC 2 ILE A 519 ILE A 533 1 O VAL A 529 N PHE A 543 SHEET 1 AD 2 GLN A 511 VAL A 512 0 SHEET 2 AD 2 GLU A 515 SER A 516 -1 O GLU A 515 N VAL A 512 SHEET 1 BA 5 TYR B 470 VAL B 472 0 SHEET 2 BA 5 TYR B 479 SER B 483 -1 O MET B 480 N VAL B 472 SHEET 3 BA 5 LYS B 415 ILE B 427 -1 O THR B 421 N SER B 483 SHEET 4 BA 5 ILE B 519 ILE B 533 -1 O THR B 520 N GLY B 426 SHEET 5 BA 5 ARG B 539 PHE B 543 1 O ARG B 539 N ILE B 533 SHEET 1 BB 7 TYR B 470 VAL B 472 0 SHEET 2 BB 7 TYR B 479 SER B 483 -1 O MET B 480 N VAL B 472 SHEET 3 BB 7 LYS B 415 ILE B 427 -1 O THR B 421 N SER B 483 SHEET 4 BB 7 ILE B 519 ILE B 533 -1 O THR B 520 N GLY B 426 SHEET 5 BB 7 ILE B 562 SER B 565 1 O ASN B 563 N ILE B 523 SHEET 6 BB 7 MET B 599 ARG B 606 -1 O TRP B 602 N VAL B 564 SHEET 7 BB 7 PHE B 582 VAL B 590 -1 O HIS B 583 N SER B 605 SHEET 1 BC 2 ARG B 539 PHE B 543 0 SHEET 2 BC 2 ILE B 519 ILE B 533 1 O VAL B 529 N PHE B 543 SHEET 1 BD 2 GLN B 511 VAL B 512 0 SHEET 2 BD 2 GLU B 515 SER B 516 -1 O GLU B 515 N VAL B 512 CISPEP 1 LEU A 485 PRO A 486 0 -3.51 CISPEP 2 LEU B 485 PRO B 486 0 1.48 SITE 1 AC1 5 PHE B 468 GLY B 484 LEU B 485 PRO B 486 SITE 2 AC1 5 GLU B 487 SITE 1 AC2 4 PHE A 468 ARG A 494 SER A 495 HOH A2056 SITE 1 AC3 6 VAL A 428 GLY A 429 PHE A 430 PHE A 433 SITE 2 AC3 6 VAL A 517 HOH A2162 CRYST1 65.590 90.380 140.030 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011064 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007141 0.00000 MTRIX1 1 -0.946550 -0.088780 0.310100 -44.16552 1 MTRIX2 1 0.009400 -0.968570 -0.248580 -33.16879 1 MTRIX3 1 0.322430 -0.232380 0.917630 2.54190 1