HEADER UNKNOWN FUNCTION 24-NOV-09 2WZ7 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF E.COLI YBGF COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YBGF; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 35-109; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.M.KRACHLER,A.SHARMA,C.KLEANTHOUS REVDAT 2 20-APR-11 2WZ7 1 JRNL REMARK REVDAT 1 15-SEP-10 2WZ7 0 JRNL AUTH A.M.KRACHLER,A.SHARMA,A.CAULDWELL,G.PAPADAKOS,C.KLEANTHOUS JRNL TITL TOLA MODULATES THE OLIGOMERIC STATUS OF YBGF IN THE JRNL TITL 2 BACTERIAL PERIPLASM. JRNL REF J.MOL.BIOL. V. 403 270 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20816983 JRNL DOI 10.1016/J.JMB.2010.08.050 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.90 REMARK 3 NUMBER OF REFLECTIONS : 13919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21709 REMARK 3 R VALUE (WORKING SET) : 0.21257 REMARK 3 FREE R VALUE : 0.30223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 737 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.482 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.546 REMARK 3 REFLECTION IN BIN (WORKING SET) : 979 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.202 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.234 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3251 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.087 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03 REMARK 3 B22 (A**2) : 0.02 REMARK 3 B33 (A**2) : -0.05 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.539 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.376 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.081 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3287 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4429 ; 1.526 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 404 ; 5.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;41.672 ;27.005 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 661 ;18.542 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.303 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2489 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1995 ; 0.741 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3234 ; 1.562 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1292 ; 2.807 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1190 ; 4.979 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2WZ7 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-09. REMARK 100 THE PDBE ID CODE IS EBI-40846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0395 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26790 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.48 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.8 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.5 REMARK 200 R MERGE FOR SHELL (I) : 0.09 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 23.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 5.0, 10% REMARK 280 PEG4000, 7.5% DIOXANE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.86850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.84850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.69100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 118.84850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.86850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.69100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 68 REMARK 465 SER A 69 REMARK 465 GLY A 70 REMARK 465 GLY A 71 REMARK 465 ALA A 72 REMARK 465 ALA A 73 REMARK 465 ALA A 74 REMARK 465 GLN A 75 REMARK 465 SER B 1 REMARK 465 SER B 69 REMARK 465 GLY B 70 REMARK 465 GLY B 71 REMARK 465 ALA B 72 REMARK 465 ALA B 73 REMARK 465 ALA B 74 REMARK 465 GLN B 75 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 GLY C 70 REMARK 465 GLY C 71 REMARK 465 ALA C 72 REMARK 465 ALA C 73 REMARK 465 ALA C 74 REMARK 465 GLN C 75 REMARK 465 SER D 1 REMARK 465 SER D 69 REMARK 465 GLY D 70 REMARK 465 GLY D 71 REMARK 465 ALA D 72 REMARK 465 ALA D 73 REMARK 465 ALA D 74 REMARK 465 GLN D 75 REMARK 465 SER E 1 REMARK 465 SER E 69 REMARK 465 GLY E 70 REMARK 465 GLY E 71 REMARK 465 ALA E 72 REMARK 465 ALA E 73 REMARK 465 ALA E 74 REMARK 465 GLN E 75 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ASP F 65 REMARK 465 SER F 66 REMARK 465 LEU F 67 REMARK 465 SER F 68 REMARK 465 SER F 69 REMARK 465 GLY F 70 REMARK 465 GLY F 71 REMARK 465 ALA F 72 REMARK 465 ALA F 73 REMARK 465 ALA F 74 REMARK 465 GLN F 75 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER D 68 O REMARK 470 GLN F 63 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU D 5 OG1 THR D 9 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG F 56 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN F 63 1.12 -57.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1068 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C1070 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F1065 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AUC D1069 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E1070 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU F1066 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AU F1067 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XDJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN REMARK 900 OF E.COLI YBGF REMARK 900 RELATED ID: 2XEV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TPR DOMAIN OF XANTHOMONAS REMARK 900 CAMPESTRIS YBGF DBREF 2WZ7 A 1 75 UNP P45955 YBGF_ECOLI 35 109 DBREF 2WZ7 B 1 75 UNP P45955 YBGF_ECOLI 35 109 DBREF 2WZ7 C 1 75 UNP P45955 YBGF_ECOLI 35 109 DBREF 2WZ7 D 1 75 UNP P45955 YBGF_ECOLI 35 109 DBREF 2WZ7 E 1 75 UNP P45955 YBGF_ECOLI 35 109 DBREF 2WZ7 F 1 75 UNP P45955 YBGF_ECOLI 35 109 SEQRES 1 A 75 SER GLY SER VAL GLU ASP ARG VAL THR GLN LEU GLU ARG SEQRES 2 A 75 ILE SER ASN ALA HIS SER GLN LEU LEU THR GLN LEU GLN SEQRES 3 A 75 GLN GLN LEU SER ASP ASN GLN SER ASP ILE ASP SER LEU SEQRES 4 A 75 ARG GLY GLN ILE GLN GLU ASN GLN TYR GLN LEU ASN GLN SEQRES 5 A 75 VAL VAL GLU ARG GLN LYS GLN ILE LEU LEU GLN ILE ASP SEQRES 6 A 75 SER LEU SER SER GLY GLY ALA ALA ALA GLN SEQRES 1 B 75 SER GLY SER VAL GLU ASP ARG VAL THR GLN LEU GLU ARG SEQRES 2 B 75 ILE SER ASN ALA HIS SER GLN LEU LEU THR GLN LEU GLN SEQRES 3 B 75 GLN GLN LEU SER ASP ASN GLN SER ASP ILE ASP SER LEU SEQRES 4 B 75 ARG GLY GLN ILE GLN GLU ASN GLN TYR GLN LEU ASN GLN SEQRES 5 B 75 VAL VAL GLU ARG GLN LYS GLN ILE LEU LEU GLN ILE ASP SEQRES 6 B 75 SER LEU SER SER GLY GLY ALA ALA ALA GLN SEQRES 1 C 75 SER GLY SER VAL GLU ASP ARG VAL THR GLN LEU GLU ARG SEQRES 2 C 75 ILE SER ASN ALA HIS SER GLN LEU LEU THR GLN LEU GLN SEQRES 3 C 75 GLN GLN LEU SER ASP ASN GLN SER ASP ILE ASP SER LEU SEQRES 4 C 75 ARG GLY GLN ILE GLN GLU ASN GLN TYR GLN LEU ASN GLN SEQRES 5 C 75 VAL VAL GLU ARG GLN LYS GLN ILE LEU LEU GLN ILE ASP SEQRES 6 C 75 SER LEU SER SER GLY GLY ALA ALA ALA GLN SEQRES 1 D 75 SER GLY SER VAL GLU ASP ARG VAL THR GLN LEU GLU ARG SEQRES 2 D 75 ILE SER ASN ALA HIS SER GLN LEU LEU THR GLN LEU GLN SEQRES 3 D 75 GLN GLN LEU SER ASP ASN GLN SER ASP ILE ASP SER LEU SEQRES 4 D 75 ARG GLY GLN ILE GLN GLU ASN GLN TYR GLN LEU ASN GLN SEQRES 5 D 75 VAL VAL GLU ARG GLN LYS GLN ILE LEU LEU GLN ILE ASP SEQRES 6 D 75 SER LEU SER SER GLY GLY ALA ALA ALA GLN SEQRES 1 E 75 SER GLY SER VAL GLU ASP ARG VAL THR GLN LEU GLU ARG SEQRES 2 E 75 ILE SER ASN ALA HIS SER GLN LEU LEU THR GLN LEU GLN SEQRES 3 E 75 GLN GLN LEU SER ASP ASN GLN SER ASP ILE ASP SER LEU SEQRES 4 E 75 ARG GLY GLN ILE GLN GLU ASN GLN TYR GLN LEU ASN GLN SEQRES 5 E 75 VAL VAL GLU ARG GLN LYS GLN ILE LEU LEU GLN ILE ASP SEQRES 6 E 75 SER LEU SER SER GLY GLY ALA ALA ALA GLN SEQRES 1 F 75 SER GLY SER VAL GLU ASP ARG VAL THR GLN LEU GLU ARG SEQRES 2 F 75 ILE SER ASN ALA HIS SER GLN LEU LEU THR GLN LEU GLN SEQRES 3 F 75 GLN GLN LEU SER ASP ASN GLN SER ASP ILE ASP SER LEU SEQRES 4 F 75 ARG GLY GLN ILE GLN GLU ASN GLN TYR GLN LEU ASN GLN SEQRES 5 F 75 VAL VAL GLU ARG GLN LYS GLN ILE LEU LEU GLN ILE ASP SEQRES 6 F 75 SER LEU SER SER GLY GLY ALA ALA ALA GLN HET GOL E1069 6 HET GOL A1068 6 HET ACT A1069 4 HET ACT C1070 4 HET EDO F1065 4 HET AUC D1069 5 HET NA E1070 1 HET AU F1066 1 HET AU F1067 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM AU GOLD ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM AUC GOLD (I) CYANIDE ION HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 7 EDO C2 H6 O2 FORMUL 8 AU 2(AU 1+) FORMUL 9 NA NA 1+ FORMUL 10 GOL 2(C3 H8 O3) FORMUL 11 AUC C2 AU N2 FORMUL 12 ACT 2(C2 H3 O2 1-) FORMUL 13 HOH *94(H2 O) HELIX 1 1 SER A 3 ASP A 65 1 63 HELIX 2 2 SER B 3 SER B 66 1 64 HELIX 3 3 SER C 3 SER C 69 1 67 HELIX 4 4 SER D 3 LEU D 67 1 65 HELIX 5 5 SER E 3 LEU E 67 1 65 HELIX 6 6 SER F 3 LEU F 62 1 60 LINK NA NA E1070 ND2 ASN D 51 1555 3745 2.41 CISPEP 1 GLY B 2 SER B 3 0 -7.18 CISPEP 2 LEU B 67 SER B 68 0 -11.90 SITE 1 AC1 8 LEU C 29 SER C 30 GLN C 33 GLN E 28 SITE 2 AC1 8 ASP E 31 ASN E 32 HOH E2013 ARG F 56 SITE 1 AC2 5 LYS A 58 GLN A 59 LEU A 62 GLU C 55 SITE 2 AC2 5 GLN C 59 SITE 1 AC3 5 VAL A 4 VAL B 4 VAL C 4 GLU D 5 SITE 2 AC3 5 VAL F 4 SITE 1 AC4 2 GLN C 24 GLN C 28 SITE 1 AC5 3 LEU F 61 LEU F 62 ILE F 64 SITE 1 AC6 5 GLN C 57 VAL D 53 ARG D 56 GLN D 57 SITE 2 AC6 5 GLN E 57 SITE 1 AC7 4 TYR D 48 ASN D 51 SER E 34 SER E 38 SITE 1 AC8 6 GLN B 57 GLN C 33 GLN F 52 VAL F 53 SITE 2 AC8 6 ARG F 56 HOH F2015 SITE 1 AC9 5 ASN A 32 LEU B 29 ASN B 32 LEU F 29 SITE 2 AC9 5 ASN F 32 CRYST1 39.737 41.382 237.697 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004207 0.00000