HEADER TRANSFERASE 29-NOV-09 2WZG TITLE LEGIONELLA GLUCOSYLTRANSFERASE (LGT1) CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS TRANSFERASE, ELONGATION FACTOR 1A, VIRULENCE FACTOR, KEYWDS 2 GLUCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.HURTADO-GUERRERO,T.ZUSMAN,S.PATHAK,A.F.M.IBRAHIM,S.SHEPHERD, AUTHOR 2 A.PRESCOTT,G.SEGAL,D.M.F.VAN AALTEN REVDAT 3 02-MAY-18 2WZG 1 SOURCE AUTHOR REMARK REVDAT 2 06-APR-11 2WZG 1 JRNL REMARK ATOM REVDAT 1 08-DEC-09 2WZG 0 JRNL AUTH R.HURTADO-GUERRERO,T.ZUSMAN,S.PATHAK,A.F.M.IBRAHIM, JRNL AUTH 2 S.SHEPHERD,A.PRESCOTT,G.SEGAL,D.M.F.VAN AALTEN JRNL TITL MOLECULAR MECHANISM OF ELONGATION FACTOR 1A INHIBITION BY A JRNL TITL 2 LEGIONELLA PNEUMOPHILA GLYCOSYLTRANSFERASE. JRNL REF BIOCHEM.J. V. 426 281 2010 JRNL REFN ISSN 0264-6021 JRNL PMID 20030628 JRNL DOI 10.1042/BJ20091351 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 44388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 680 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4010 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.60000 REMARK 3 B22 (A**2) : -1.60000 REMARK 3 B33 (A**2) : 2.41000 REMARK 3 B12 (A**2) : -0.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4267 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5810 ; 1.381 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 9.877 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;33.728 ;24.657 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 762 ;16.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;22.279 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 641 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3246 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2571 ; 0.739 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4187 ; 1.358 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1696 ; 2.115 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1602 ; 3.488 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1290041863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 73 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45918 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: HG WAS USED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN 0.1 M MGCL2, REMARK 280 12% PEG 6000, 0.1 M ACETAMIDO IMINODIACETIC ACID, PH 6.5. 2- REMARK 280 METHYL-2,4-PENTANEDIOL (MPD) AT 20% IN MOTHER LIQUOR WAS USED AS REMARK 280 A CRYOPROTECTANT. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.37500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.43487 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.47200 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 61.37500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 35.43487 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.47200 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 61.37500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 35.43487 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.47200 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.86975 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 68.94400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 70.86975 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 68.94400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 70.86975 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.94400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 411 REMARK 465 SER A 412 REMARK 465 GLU A 413 REMARK 465 ILE A 414 REMARK 465 ASN A 415 REMARK 465 GLN A 416 REMARK 465 HIS A 417 REMARK 465 THR A 418 REMARK 465 LEU A 510 REMARK 465 GLY A 511 REMARK 465 VAL A 512 REMARK 465 LEU A 513 REMARK 465 ASN A 514 REMARK 465 ARG A 515 REMARK 465 GLU A 516 REMARK 465 GLY A 517 REMARK 465 VAL A 524 REMARK 465 GLY A 525 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 249 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2016 O HOH A 2019 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2050 O HOH A 2112 9444 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 164 C - N - CD ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 22 26.85 49.51 REMARK 500 VAL A 81 -58.32 -122.74 REMARK 500 MET A 148 133.77 -176.33 REMARK 500 ASN A 240 11.03 -142.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 163 PRO A 164 -101.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2059 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A2070 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2081 DISTANCE = 7.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1524 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UPG A1525 O1A REMARK 620 2 UPG A1525 O2B 79.9 REMARK 620 3 HOH A2166 O 99.6 119.4 REMARK 620 4 HOH A2318 O 164.2 84.6 90.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 1525 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WZF RELATED DB: PDB REMARK 900 LEGIONELLA PNEUMOPHILA GLUCOSYLTRANSFERASE CRYSTAL STRUCTURE DBREF 2WZG A 1 525 UNP Q5WWY0 Q5WWY0_LEGPL 1 525 SEQRES 1 A 525 MET LYS ALA ARG ARG SER ASN GLU LEU SER LYS LEU ARG SEQRES 2 A 525 MET ARG PHE PHE SER ALA LEU ASN HIS THR SER GLU ILE SEQRES 3 A 525 ASP LEU HIS THR LEU PHE ASP ASN LEU LYS SER ASN LEU SEQRES 4 A 525 THR LEU GLY SER ILE GLU HIS LEU GLN GLU GLY SER VAL SEQRES 5 A 525 THR TYR ALA ILE ILE GLN GLU LEU LEU LYS GLY ALA ASP SEQRES 6 A 525 ALA GLN LYS LYS ILE GLU SER PHE LEU LYS GLY ALA ILE SEQRES 7 A 525 LYS ASN VAL ILE HIS PRO GLY VAL ILE LYS GLY LEU THR SEQRES 8 A 525 PRO ASN GLU ILE ASN TRP ASN VAL ALA LYS ALA TYR PRO SEQRES 9 A 525 GLU TYR TYR GLU HIS GLU LYS LEU PRO ASP VAL THR PHE SEQRES 10 A 525 GLY GLY PHE LYS VAL ARG ASP SER ASN GLU PHE LYS PHE SEQRES 11 A 525 LYS THR ASN VAL GLN THR SER ILE TRP PHE SER ILE LYS SEQRES 12 A 525 PRO GLU LEU PHE MET PRO SER LYS GLN GLN GLU ALA LEU SEQRES 13 A 525 LYS ARG ARG ARG GLU GLN TYR PRO GLY CYS LYS ILE ARG SEQRES 14 A 525 LEU ILE TYR SER SER SER LEU LEU ASN PRO GLU ALA ASN SEQRES 15 A 525 ARG GLN MET LYS ALA PHE ALA LYS LYS GLN ASN ILE SER SEQRES 16 A 525 LEU ILE ASP ILE ASP SER VAL LYS THR ASP SER PRO LEU SEQRES 17 A 525 TYR PRO LEU ILE LYS ALA GLU LEU ALA ASN LEU GLY MET SEQRES 18 A 525 GLY GLY ASN PRO ALA ALA ALA SER ASP LEU CYS ARG TRP SEQRES 19 A 525 ILE PRO GLU LEU PHE ASN GLU GLY PHE TYR VAL ASP ILE SEQRES 20 A 525 ASP LEU PRO VAL ASP SER SER LYS ILE VAL GLU GLY HIS SEQRES 21 A 525 GLN ILE THR GLY GLY VAL PRO ILE MET LEU ASN MET GLY SEQRES 22 A 525 SER ILE ILE SER GLU PRO ILE ALA PRO HIS HIS ARG ARG SEQRES 23 A 525 GLN GLU ALA VAL CYS MET ASN THR ASP ILE ILE ALA TYR SEQRES 24 A 525 ALA ASN ASP ARG GLU THR GLN VAL MET MET ASP THR VAL SEQRES 25 A 525 ALA LEU HIS LEU LYS ASN ILE TYR ASP ASP PRO TYR THR SEQRES 26 A 525 ALA LEU LYS ASP THR PRO LEU ALA GLN THR ALA PHE PHE SEQRES 27 A 525 ASN ARG CYS GLU GLU GLU GLY LYS ASN ILE PHE GLU LEU SEQRES 28 A 525 ARG LYS GLY LEU GLN ASP ALA PHE ARG SER ASP SER LEU SEQRES 29 A 525 LEU GLU LEU TYR VAL PHE LEU GLY PRO ALA LYS PHE LYS SEQRES 30 A 525 GLU VAL PHE LYS LEU LYS GLU THR GLN ILE LYS TYR ILE SEQRES 31 A 525 ASP ASP HIS ILE SER GLU PHE ASN GLU HIS ASP LEU LEU SEQRES 32 A 525 LEU HIS LEU ILE SER ASP ASN PRO SER GLU ILE ASN GLN SEQRES 33 A 525 HIS THR LEU ASP PHE GLY ARG ALA LYS VAL MET TYR MET SEQRES 34 A 525 ASP ILE ALA LYS GLU HIS TYR SER ALA PHE TYR LYS PRO SEQRES 35 A 525 LEU VAL GLU GLU ILE SER GLY PRO GLY ALA ILE TYR ASN SEQRES 36 A 525 ALA LEU GLY GLY ALA SER ASN PHE THR THR THR HIS ARG SEQRES 37 A 525 ARG SER THR GLY PRO MET LEU PRO THR THR PRO PRO ARG SEQRES 38 A 525 VAL LEU GLN VAL PHE CYS ASP ALA HIS ASP LYS GLY PRO SEQRES 39 A 525 PHE VAL SER ASP ASN ILE ALA ARG TRP GLN THR ASN VAL SEQRES 40 A 525 ARG GLU LEU GLY VAL LEU ASN ARG GLU GLY LEU SER TRP SEQRES 41 A 525 LEU PRO SER VAL GLY HET MG A1524 1 HET UPG A1525 36 HETNAM MG MAGNESIUM ION HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 MG MG 2+ FORMUL 3 UPG C15 H24 N2 O17 P2 FORMUL 4 HOH *318(H2 O) HELIX 1 1 SER A 6 LEU A 20 1 15 HELIX 2 2 ASP A 27 LYS A 36 1 10 HELIX 3 3 SER A 37 LEU A 39 5 3 HELIX 4 4 THR A 40 GLU A 45 1 6 HELIX 5 5 HIS A 46 GLN A 48 5 3 HELIX 6 6 SER A 51 LYS A 62 1 12 HELIX 7 7 ASP A 65 VAL A 81 1 17 HELIX 8 8 VAL A 81 GLY A 89 1 9 HELIX 9 9 THR A 91 TYR A 103 1 13 HELIX 10 10 PRO A 149 TYR A 163 1 15 HELIX 11 11 SER A 173 LEU A 177 5 5 HELIX 12 12 ASN A 178 ASN A 193 1 16 HELIX 13 13 ASP A 200 VAL A 202 5 3 HELIX 14 14 PRO A 207 ASN A 218 1 12 HELIX 15 15 ASN A 224 ARG A 233 1 10 HELIX 16 16 ASP A 252 ILE A 256 5 5 HELIX 17 17 ASP A 302 ASP A 322 1 21 HELIX 18 18 ASP A 322 LEU A 327 1 6 HELIX 19 19 THR A 330 GLN A 334 5 5 HELIX 20 20 THR A 335 GLY A 345 1 11 HELIX 21 21 ASN A 347 SER A 361 1 15 HELIX 22 22 SER A 363 GLY A 372 1 10 HELIX 23 23 GLY A 372 PHE A 380 1 9 HELIX 24 24 LYS A 383 ILE A 394 1 12 HELIX 25 25 SER A 395 PHE A 397 5 3 HELIX 26 26 ASN A 398 ASP A 409 1 12 HELIX 27 27 ASP A 420 GLU A 434 1 15 HELIX 28 28 HIS A 435 LYS A 441 1 7 HELIX 29 29 LYS A 441 GLU A 446 1 6 HELIX 30 30 GLY A 449 LEU A 457 1 9 HELIX 31 31 GLY A 458 PHE A 463 1 6 HELIX 32 32 THR A 478 CYS A 487 1 10 HELIX 33 33 ASP A 488 GLY A 493 1 6 SHEET 1 AA 2 THR A 116 PHE A 117 0 SHEET 2 AA 2 PHE A 120 LYS A 121 -1 O PHE A 120 N PHE A 117 SHEET 1 AB 2 PHE A 128 LYS A 131 0 SHEET 2 AB 2 GLN A 261 GLY A 264 -1 O ILE A 262 N PHE A 130 SHEET 1 AC 6 SER A 195 ASP A 198 0 SHEET 2 AC 6 LYS A 167 TYR A 172 1 O ILE A 168 N SER A 195 SHEET 3 AC 6 VAL A 134 ILE A 138 1 O GLN A 135 N ARG A 169 SHEET 4 AC 6 GLY A 242 VAL A 245 1 O PHE A 243 N THR A 136 SHEET 5 AC 6 GLN A 287 TYR A 299 -1 O ILE A 297 N TYR A 244 SHEET 6 AC 6 THR A 464 THR A 466 1 O THR A 465 N GLU A 288 SHEET 1 AD 7 SER A 195 ASP A 198 0 SHEET 2 AD 7 LYS A 167 TYR A 172 1 O ILE A 168 N SER A 195 SHEET 3 AD 7 VAL A 134 ILE A 138 1 O GLN A 135 N ARG A 169 SHEET 4 AD 7 GLY A 242 VAL A 245 1 O PHE A 243 N THR A 136 SHEET 5 AD 7 GLN A 287 TYR A 299 -1 O ILE A 297 N TYR A 244 SHEET 6 AD 7 ILE A 268 ILE A 276 -1 O MET A 269 N ALA A 298 SHEET 7 AD 7 THR A 505 ASN A 506 1 O THR A 505 N ILE A 276 SHEET 1 AE 2 THR A 464 THR A 466 0 SHEET 2 AE 2 GLN A 287 TYR A 299 1 O GLU A 288 N THR A 465 LINK MG MG A1524 O1A UPG A1525 1555 1555 2.09 LINK MG MG A1524 O2B UPG A1525 1555 1555 2.14 LINK MG MG A1524 O HOH A2166 1555 1555 2.19 LINK MG MG A1524 O HOH A2318 1555 1555 2.14 CISPEP 1 ALA A 281 PRO A 282 0 -1.51 SITE 1 AC1 4 ASP A 248 UPG A1525 HOH A2166 HOH A2318 SITE 1 AC2 22 ILE A 138 TRP A 139 PHE A 140 PRO A 225 SITE 2 AC2 22 ALA A 226 SER A 229 ASP A 230 ARG A 233 SITE 3 AC2 22 ASP A 246 ILE A 247 ASP A 295 VAL A 444 SITE 4 AC2 22 PRO A 450 SER A 519 TRP A 520 MG A1524 SITE 5 AC2 22 HOH A2313 HOH A2314 HOH A2315 HOH A2316 SITE 6 AC2 22 HOH A2317 HOH A2318 CRYST1 122.750 122.750 103.416 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008147 0.004703 0.000000 0.00000 SCALE2 0.000000 0.009407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009670 0.00000