HEADER HYDROLASE 02-DEC-09 2WZQ TITLE INSERTION MUTANT E173GP174 OF THE NS3 PROTEASE-HELICASE FROM DENGUE TITLE 2 VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 PROTEASE-HELICASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1475-1647,1648-2092; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NS3 PROTEASE-HELICASE; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: RESIDUES 1393-1410; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS; SOURCE 3 ORGANISM_TAXID: 12637; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: DENGUE VIRUS; SOURCE 8 ORGANISM_TAXID: 12637; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRION, HYDROLASE, TRANSMEMBRANE, ENVELOPE PROTEIN, NUCLEOTIDE- KEYWDS 2 BINDING, CAPSID PROTEIN, DOMAIN MOBILITY, RNA REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR D.LUO,N.WEI,D.DOAN,P.PARADKAR,Y.CHONG,A.DAVIDSON,M.KOTAKA,J.LESCAR, AUTHOR 2 S.VASUDEVAN REVDAT 5 20-DEC-23 2WZQ 1 REMARK REVDAT 4 13-JUL-11 2WZQ 1 VERSN REVDAT 3 16-JUN-10 2WZQ 1 JRNL REVDAT 2 21-APR-10 2WZQ 1 JRNL REVDAT 1 07-APR-10 2WZQ 0 JRNL AUTH D.LUO,N.WEI,D.N.DOAN,P.N.PARADKAR,Y.CHONG,A.D.DAVIDSON, JRNL AUTH 2 M.KOTAKA,J.LESCAR,S.G.VASUDEVAN JRNL TITL FLEXIBILITY BETWEEN THE PROTEASE AND HELICASE DOMAINS OF THE JRNL TITL 2 DENGUE VIRUS NS3 PROTEIN CONFERRED BY THE LINKER REGION AND JRNL TITL 3 ITS FUNCTIONAL IMPLICATIONS. JRNL REF J.BIOL.CHEM. V. 285 18817 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20375022 JRNL DOI 10.1074/JBC.M109.090936 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 881 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.81000 REMARK 3 B22 (A**2) : -1.89000 REMARK 3 B33 (A**2) : 5.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.436 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.344 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.330 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4730 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6401 ; 1.305 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 587 ; 6.377 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;39.205 ;23.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 807 ;21.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3585 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2950 ; 0.374 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4753 ; 0.707 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1780 ; 0.994 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1648 ; 1.695 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 169 REMARK 3 RESIDUE RANGE : C 49 C 61 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0982 2.6113 -8.7539 REMARK 3 T TENSOR REMARK 3 T11: 0.8970 T22: 0.6403 REMARK 3 T33: 0.3760 T12: 0.1178 REMARK 3 T13: -0.1453 T23: -0.0992 REMARK 3 L TENSOR REMARK 3 L11: 6.1311 L22: 2.1494 REMARK 3 L33: 9.5841 L12: -0.8780 REMARK 3 L13: 2.7121 L23: -3.0026 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.1185 S13: 0.0449 REMARK 3 S21: 0.2784 S22: 0.1642 S23: -0.0301 REMARK 3 S31: -0.4607 S32: 0.2863 S33: -0.1371 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 316 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2545 8.0236 19.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.2060 REMARK 3 T33: 0.1072 T12: 0.0034 REMARK 3 T13: 0.0586 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 4.4596 L22: 5.4925 REMARK 3 L33: 4.3629 L12: -0.8568 REMARK 3 L13: 1.1236 L23: -1.7075 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.6372 S13: 0.0740 REMARK 3 S21: -0.6017 S22: -0.2885 S23: -0.1593 REMARK 3 S31: -0.0584 S32: 0.2924 S33: 0.2601 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 317 A 481 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5200 -6.0356 28.7152 REMARK 3 T TENSOR REMARK 3 T11: 0.0612 T22: 0.0651 REMARK 3 T33: 0.1997 T12: 0.0448 REMARK 3 T13: 0.0327 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 6.5921 L22: 3.5701 REMARK 3 L33: 4.1346 L12: 1.5719 REMARK 3 L13: 0.6638 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: 0.1489 S13: -0.4710 REMARK 3 S21: -0.0680 S22: 0.1462 S23: 0.2932 REMARK 3 S31: 0.3001 S32: 0.0241 S33: -0.1140 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 482 A 619 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7788 -2.5417 46.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.3172 REMARK 3 T33: 0.0948 T12: -0.0805 REMARK 3 T13: -0.0551 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 3.3982 L22: 6.7976 REMARK 3 L33: 2.8627 L12: 1.7938 REMARK 3 L13: -0.8397 L23: -2.3675 REMARK 3 S TENSOR REMARK 3 S11: 0.3928 S12: -0.4658 S13: -0.3477 REMARK 3 S21: 0.4725 S22: -0.6555 S23: -0.6458 REMARK 3 S31: -0.1554 S32: 0.4789 S33: 0.2628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2WZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1290041914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17435 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VBC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.86000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 TRP A 5 REMARK 465 ASP A 6 REMARK 465 VAL A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 GLN A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 ARG A 28 REMARK 465 GLY A 29 REMARK 465 LEU A 30 REMARK 465 PHE A 31 REMARK 465 GLU A 61 REMARK 465 THR A 62 REMARK 465 LYS A 91 REMARK 465 GLU A 92 REMARK 465 GLU A 93 REMARK 465 LEU A 119 REMARK 465 THR A 120 REMARK 465 GLY A 121 REMARK 465 VAL A 154 REMARK 465 VAL A 155 REMARK 465 THR A 156 REMARK 465 LYS A 157 REMARK 465 SER A 158 REMARK 465 GLY A 159 REMARK 465 ASP A 160 REMARK 465 GLY C 45 REMARK 465 SER C 46 REMARK 465 ALA C 47 REMARK 465 MET C 48 REMARK 465 ASP C 62 REMARK 465 GLU C 63 REMARK 465 MET C 64 REMARK 465 ALA C 65 REMARK 465 ASP C 66 REMARK 465 GLY C 67 REMARK 465 GLY C 68 REMARK 465 GLY C 69 REMARK 465 GLY C 70 REMARK 465 SER C 71 REMARK 465 GLY C 72 REMARK 465 GLY C 73 REMARK 465 GLY C 74 REMARK 465 GLY C 75 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 TYR A 161 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 171 CG1 CG2 CD1 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 PRO A 175 CG CD REMARK 470 ASP A 176 CG OD1 OD2 REMARK 470 TYR A 177 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 583 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 583 CZ3 CH2 REMARK 470 TRP C 61 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 61 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 273 OE1 GLU A 337 1655 2.18 REMARK 500 N LYS A 249 O GLU A 337 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 196 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 33 114.92 -165.87 REMARK 500 THR A 34 -155.70 -114.19 REMARK 500 ASP A 75 79.81 63.52 REMARK 500 MET A 76 145.91 -172.21 REMARK 500 ASP A 87 -165.38 -165.27 REMARK 500 LEU A 98 83.04 -68.42 REMARK 500 LYS A 104 -157.86 -142.18 REMARK 500 LYS A 142 67.96 -62.28 REMARK 500 LYS A 143 -72.14 -140.14 REMARK 500 ALA A 168 -155.19 -114.58 REMARK 500 GLU A 173 -90.69 -103.98 REMARK 500 ASP A 176 20.84 -65.41 REMARK 500 GLU A 181 -157.94 -85.03 REMARK 500 ASP A 182 -15.29 76.36 REMARK 500 ASP A 193 48.88 -95.78 REMARK 500 LEU A 194 149.56 -38.06 REMARK 500 PRO A 196 58.35 -32.68 REMARK 500 ALA A 198 97.97 -172.08 REMARK 500 LYS A 200 -99.15 -179.50 REMARK 500 ARG A 218 99.36 -55.51 REMARK 500 VAL A 276 107.70 -58.76 REMARK 500 ALA A 287 11.51 -69.95 REMARK 500 THR A 316 143.09 -177.38 REMARK 500 THR A 323 13.37 -140.46 REMARK 500 ILE A 352 -71.58 -66.78 REMARK 500 PRO A 426 7.60 -66.95 REMARK 500 PRO A 439 122.11 -33.03 REMARK 500 THR A 566 41.97 -97.61 REMARK 500 GLU A 576 48.78 39.73 REMARK 500 ASP A 604 128.83 178.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1620 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1621 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VBC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NS3 PROTEASE- HELICASE FROM DENGUE VIRUS REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN A INSERTION G174. DBREF 2WZQ A 1 173 UNP Q2TN89 Q2TN89_9FLAV 1475 1647 DBREF 2WZQ A 174 174 PDB 2WZQ 2WZQ 174 174 DBREF 2WZQ A 175 619 UNP Q2TN89 Q2TN89_9FLAV 1648 2092 DBREF 2WZQ C 49 66 UNP Q2TN89 Q2TN89_9FLAV 1393 1410 SEQADV 2WZQ ASP A 251 UNP Q2TN89 GLU 1724 CONFLICT SEQADV 2WZQ ASN C 58 UNP Q2TN89 SER 1402 CONFLICT SEQADV 2WZQ GLY C 45 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ SER C 46 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ ALA C 47 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ MET C 48 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ GLY C 67 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ GLY C 68 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ GLY C 69 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ GLY C 70 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ SER C 71 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ GLY C 72 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ GLY C 73 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ GLY C 74 UNP Q2TN89 EXPRESSION TAG SEQADV 2WZQ GLY C 75 UNP Q2TN89 EXPRESSION TAG SEQRES 1 A 619 SER GLY ALA LEU TRP ASP VAL PRO SER PRO ALA ALA THR SEQRES 2 A 619 GLN LYS ALA THR LEU SER GLU GLY VAL TYR ARG ILE MET SEQRES 3 A 619 GLN ARG GLY LEU PHE GLY LYS THR GLN VAL GLY VAL GLY SEQRES 4 A 619 ILE HIS MET GLU GLY VAL PHE HIS THR MET TRP HIS VAL SEQRES 5 A 619 THR ARG GLY SER VAL ILE CYS HIS GLU THR GLY ARG LEU SEQRES 6 A 619 GLU PRO SER TRP ALA ASP VAL ARG ASN ASP MET ILE SER SEQRES 7 A 619 TYR GLY GLY GLY TRP ARG LEU GLY ASP LYS TRP ASP LYS SEQRES 8 A 619 GLU GLU ASP VAL GLN VAL LEU ALA ILE GLU PRO GLY LYS SEQRES 9 A 619 ASN PRO LYS HIS VAL GLN THR LYS PRO GLY LEU PHE LYS SEQRES 10 A 619 THR LEU THR GLY GLU ILE GLY ALA VAL THR LEU ASP PHE SEQRES 11 A 619 LYS PRO GLY THR SER GLY SER PRO ILE ILE ASN LYS LYS SEQRES 12 A 619 GLY LYS VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL THR SEQRES 13 A 619 LYS SER GLY ASP TYR VAL SER ALA ILE THR GLN ALA GLU SEQRES 14 A 619 ARG ILE GLY GLU GLY PRO ASP TYR GLU VAL ASP GLU ASP SEQRES 15 A 619 ILE PHE ARG LYS LYS ARG LEU THR ILE MET ASP LEU HIS SEQRES 16 A 619 PRO GLY ALA GLY LYS THR LYS ARG ILE LEU PRO SER ILE SEQRES 17 A 619 VAL ARG GLU ALA LEU LYS ARG ARG LEU ARG THR LEU ILE SEQRES 18 A 619 LEU ALA PRO THR ARG VAL VAL ALA ALA GLU MET GLU GLU SEQRES 19 A 619 ALA LEU ARG GLY LEU PRO ILE ARG TYR GLN THR PRO ALA SEQRES 20 A 619 VAL LYS SER ASP HIS THR GLY ARG GLU ILE VAL ASP LEU SEQRES 21 A 619 MET CYS HIS ALA THR PHE THR THR ARG LEU LEU SER SER SEQRES 22 A 619 THR ARG VAL PRO ASN TYR ASN LEU ILE VAL MET ASP GLU SEQRES 23 A 619 ALA HIS PHE THR ASP PRO CYS SER VAL ALA ALA ARG GLY SEQRES 24 A 619 TYR ILE SER THR ARG VAL GLU MET GLY GLU ALA ALA ALA SEQRES 25 A 619 ILE PHE MET THR ALA THR PRO PRO GLY SER THR ASP PRO SEQRES 26 A 619 PHE PRO GLN SER ASN SER PRO ILE GLU ASP ILE GLU ARG SEQRES 27 A 619 GLU ILE PRO GLU ARG SER TRP ASN THR GLY PHE ASP TRP SEQRES 28 A 619 ILE THR ASP TYR GLN GLY LYS THR VAL TRP PHE VAL PRO SEQRES 29 A 619 SER ILE LYS ALA GLY ASN ASP ILE ALA ASN CYS LEU ARG SEQRES 30 A 619 LYS SER GLY LYS ARG VAL ILE GLN LEU SER ARG LYS THR SEQRES 31 A 619 PHE ASP THR GLU TYR PRO LYS THR LYS LEU THR ASP TRP SEQRES 32 A 619 ASP PHE VAL VAL THR THR ASP ILE SER GLU MET GLY ALA SEQRES 33 A 619 ASN PHE ARG ALA GLY ARG VAL ILE ASP PRO ARG ARG CYS SEQRES 34 A 619 LEU LYS PRO VAL ILE LEU THR ASP GLY PRO GLU ARG VAL SEQRES 35 A 619 ILE LEU ALA GLY PRO ILE PRO VAL THR PRO ALA SER ALA SEQRES 36 A 619 ALA GLN ARG ARG GLY ARG ILE GLY ARG ASN PRO ALA GLN SEQRES 37 A 619 GLU ASP ASP GLN TYR VAL PHE SER GLY ASP PRO LEU LYS SEQRES 38 A 619 ASN ASP GLU ASP HIS ALA HIS TRP THR GLU ALA LYS MET SEQRES 39 A 619 LEU LEU ASP ASN ILE TYR THR PRO GLU GLY ILE ILE PRO SEQRES 40 A 619 THR LEU PHE GLY PRO GLU ARG GLU LYS THR GLN ALA ILE SEQRES 41 A 619 ASP GLY GLU PHE ARG LEU ARG GLY GLU GLN ARG LYS THR SEQRES 42 A 619 PHE VAL GLU LEU MET ARG ARG GLY ASP LEU PRO VAL TRP SEQRES 43 A 619 LEU SER TYR LYS VAL ALA SER ALA GLY ILE SER TYR LYS SEQRES 44 A 619 ASP ARG GLU TRP CYS PHE THR GLY GLU ARG ASN ASN GLN SEQRES 45 A 619 ILE LEU GLU GLU ASN MET GLU VAL GLU ILE TRP THR ARG SEQRES 46 A 619 GLU GLY GLU LYS LYS LYS LEU ARG PRO LYS TRP LEU ASP SEQRES 47 A 619 ALA ARG VAL TYR ALA ASP PRO MET ALA LEU LYS ASP PHE SEQRES 48 A 619 LYS GLU PHE ALA SER GLY ARG LYS SEQRES 1 C 31 GLY SER ALA MET ALA ASP LEU SER LEU GLU LYS ALA ALA SEQRES 2 C 31 ASN VAL GLN TRP ASP GLU MET ALA ASP GLY GLY GLY GLY SEQRES 3 C 31 SER GLY GLY GLY GLY HET CL A1620 1 HET GOL A1621 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL CL 1- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *25(H2 O) HELIX 1 1 MET A 49 ARG A 54 1 6 HELIX 2 2 ARG A 203 ARG A 215 1 13 HELIX 3 3 THR A 225 ARG A 237 1 13 HELIX 4 4 HIS A 263 SER A 273 1 11 HELIX 5 5 ASP A 291 MET A 307 1 17 HELIX 6 6 PHE A 349 TYR A 355 1 7 HELIX 7 7 SER A 365 SER A 379 1 15 HELIX 8 8 SER A 387 THR A 401 1 15 HELIX 9 9 ASP A 410 MET A 414 5 5 HELIX 10 10 THR A 451 GLY A 460 1 10 HELIX 11 11 ALA A 487 ASP A 497 1 11 HELIX 12 12 PHE A 510 THR A 517 5 8 HELIX 13 13 GLU A 529 ARG A 540 1 12 HELIX 14 14 PRO A 544 SER A 553 1 10 HELIX 15 15 ARG A 561 PHE A 565 5 5 HELIX 16 16 GLU A 568 GLN A 572 5 5 HELIX 17 17 ALA A 599 TYR A 602 5 4 HELIX 18 18 ASP A 604 GLY A 617 1 14 SHEET 1 AA 6 PRO A 67 ASP A 71 0 SHEET 2 AA 6 MET A 76 TYR A 79 -1 O MET A 76 N ASP A 71 SHEET 3 AA 6 VAL A 45 THR A 48 -1 O PHE A 46 N TYR A 79 SHEET 4 AA 6 GLN A 35 MET A 42 -1 O ILE A 40 N HIS A 47 SHEET 5 AA 6 GLY A 21 MET A 26 -1 O GLY A 21 N HIS A 41 SHEET 6 AA 6 LYS C 55 ALA C 57 -1 N ALA C 56 O VAL A 22 SHEET 1 AB 2 ILE A 58 CYS A 59 0 SHEET 2 AB 2 ARG A 64 LEU A 65 -1 O LEU A 65 N ILE A 58 SHEET 1 AC 6 PRO A 106 THR A 111 0 SHEET 2 AC 6 VAL A 95 ILE A 100 -1 O VAL A 95 N THR A 111 SHEET 3 AC 6 PRO A 138 ASN A 141 -1 O PRO A 138 N LEU A 98 SHEET 4 AC 6 LYS A 145 TYR A 150 -1 O LYS A 145 N ASN A 141 SHEET 5 AC 6 SER A 163 THR A 166 -1 O THR A 166 N LEU A 149 SHEET 6 AC 6 ALA A 125 VAL A 126 -1 O VAL A 126 N SER A 163 SHEET 1 AD 6 ARG A 188 MET A 192 0 SHEET 2 AD 6 ALA A 311 MET A 315 1 O ALA A 312 N THR A 190 SHEET 3 AD 6 LEU A 281 MET A 284 1 O ILE A 282 N ILE A 313 SHEET 4 AD 6 THR A 219 ALA A 223 1 O LEU A 220 N VAL A 283 SHEET 5 AD 6 VAL A 258 CYS A 262 1 O ASP A 259 N ILE A 221 SHEET 6 AD 6 ILE A 241 TYR A 243 1 O ARG A 242 N LEU A 260 SHEET 1 AE 6 ILE A 333 GLU A 337 0 SHEET 2 AE 6 ASP A 471 PHE A 475 1 O ASP A 471 N GLU A 334 SHEET 3 AE 6 ARG A 422 ASP A 425 1 O VAL A 423 N VAL A 474 SHEET 4 AE 6 THR A 359 PHE A 362 1 O VAL A 360 N ILE A 424 SHEET 5 AE 6 PHE A 405 THR A 408 1 O VAL A 406 N TRP A 361 SHEET 6 AE 6 VAL A 383 LEU A 386 1 O ILE A 384 N VAL A 407 SHEET 1 AF 2 ARG A 428 LEU A 435 0 SHEET 2 AF 2 ARG A 441 PRO A 449 -1 O ARG A 441 N LEU A 435 SHEET 1 AG 2 LEU A 574 GLU A 575 0 SHEET 2 AG 2 MET A 578 GLU A 579 -1 O MET A 578 N GLU A 575 SHEET 1 AH 2 GLU A 581 TRP A 583 0 SHEET 2 AH 2 LYS A 589 LYS A 591 -1 O LYS A 590 N ILE A 582 CISPEP 1 ASN A 152 GLY A 153 0 -1.98 CISPEP 2 ILE A 171 GLY A 172 0 -1.40 CISPEP 3 GLU A 181 ASP A 182 0 28.97 CISPEP 4 ALA A 198 GLY A 199 0 3.05 CISPEP 5 GLY A 446 PRO A 447 0 -4.12 SITE 1 AC1 2 ARG A 388 THR A 409 SITE 1 AC2 7 PRO A 319 PRO A 320 GLY A 321 SER A 322 SITE 2 AC2 7 ALA A 453 ASP A 483 LYS A 516 CRYST1 52.420 87.720 75.779 90.00 92.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019077 0.000000 0.000966 0.00000 SCALE2 0.000000 0.011400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013213 0.00000