HEADER HYDROLASE 04-DEC-09 2X02 TITLE CRYSTAL STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-10 AT 1.35 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE OXA-10; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-LACTAMASE PSE-2; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 22B KEYWDS CLASS D, HYDROLASE, ANTIBIOTIC RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR L.VERCHEVAL,F.KERFF,E.SAUVAGE,R.HERMAN,M.GALLENI,P.CHARLIER REVDAT 2 20-DEC-23 2X02 1 REMARK LINK REVDAT 1 08-DEC-10 2X02 0 JRNL AUTH L.VERCHEVAL,F.KERFF,C.BAUVOIS,E.SAUVAGE,R.GUIET,F.BOREL, JRNL AUTH 2 J.L.FERRER,P.CHARLIER,M.GALLENI JRNL TITL IMPACT OF THE CARBOXYLATED LYSINE ON THE ACYLATION AND JRNL TITL 2 DEACYLATION STEP IN CLASS D BETA-LACTAMASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 118600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6508 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 348 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 567 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4126 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5584 ; 1.531 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 5.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;39.765 ;25.191 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 743 ;13.034 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.328 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 610 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3079 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1984 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2878 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 447 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2607 ; 2.626 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4070 ; 3.441 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1772 ; 2.980 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1501 ; 4.021 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4379 ; 2.090 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 567 ;11.623 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4034 ;10.021 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2X02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1290041904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979834 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124977 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1K4F REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AS, 0.1M HEPES, PEG 400, DMSO, PH REMARK 280 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.27500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.87000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.87000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.27500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 266 REMARK 465 GLY B 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 46 -47.76 75.83 REMARK 500 SER A 46 -46.66 75.13 REMARK 500 ALA A 66 -140.13 48.02 REMARK 500 ASN A 85 -174.78 -178.43 REMARK 500 LYS A 152 6.94 -151.56 REMARK 500 GLU A 229 -127.66 54.11 REMARK 500 ALA B 66 -142.70 50.36 REMARK 500 ASN B 85 -172.14 -176.10 REMARK 500 GLU B 229 -128.64 53.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2040 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2038 DISTANCE = 5.84 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 B 1266 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 1267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1268 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K55 RELATED DB: PDB REMARK 900 OXA 10 CLASS D BETA-LACTAMASE AT PH 7.5 REMARK 900 RELATED ID: 1K56 RELATED DB: PDB REMARK 900 OXA 10 CLASS D BETA-LACTAMASE AT PH 6.5 REMARK 900 RELATED ID: 1FOF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CLASS D BETA- LACTAMASE OXA-10 REMARK 900 RELATED ID: 2WGV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE OXA-10 V117T MUTANT AT PH 6.5 INHIBITED BY REMARK 900 A CHLORIDE ION REMARK 900 RELATED ID: 2WGI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACYL-ENZYME OXA- 10 W154A-BENZYLPENICILLIN REMARK 900 AT PH 6 REMARK 900 RELATED ID: 2WKI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE OXA-10 K70C MUTANT AT PH 7.0 REMARK 900 RELATED ID: 1K4F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CLASS D BETA- LACTAMASE OXA-10 AT1.6 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 2WGW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE OXA-10 V117T MUTANT AT PH 8.0 REMARK 900 RELATED ID: 1K57 RELATED DB: PDB REMARK 900 OXA 10 CLASS D BETA-LACTAMASE AT PH 6.0 REMARK 900 RELATED ID: 1K54 RELATED DB: PDB REMARK 900 OXA-10 CLASS D BETA-LACTAMASE PARTIALLY ACYLATED WITHREACTED 6BETA- REMARK 900 (1-HYDROXY-1- METHYLETHYL) PENICILLANIC ACID REMARK 900 RELATED ID: 1K6R RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-10 IN COMPLEXWITH REMARK 900 MOXALACTAM REMARK 900 RELATED ID: 1E3U RELATED DB: PDB REMARK 900 MAD STRUCTURE OF OXA10 CLASS D BETA- LACTAMASE REMARK 900 RELATED ID: 1E4D RELATED DB: PDB REMARK 900 STRUCTURE OF OXA10 BETA-LACTAMASE AT PH 8.3 REMARK 900 RELATED ID: 1EWZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE OXA-10 BETA- LACTAMASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA REMARK 900 RELATED ID: 1K6S RELATED DB: PDB REMARK 900 STRUCTURE OF THE CLASS D BETA-LACTAMASE OXA-10 IN COMPLEXWITH A REMARK 900 PHENYLBORONIC ACID REMARK 900 RELATED ID: 1K4E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CLASS D BETA- LACTAMASES OXA-10DETERMINED REMARK 900 BY MAD PHASING WITH SELENOMETHIONINE REMARK 900 RELATED ID: 2WKH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACYL-ENZYME OXA- 10 K70C-AMPICILLIN AT PH 7 REMARK 900 RELATED ID: 2X01 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE OXA-10 S67A MUTANT AT PH 7 DBREF 2X02 A 19 19 PDB 2X02 2X02 19 19 DBREF 2X02 A 20 266 UNP P14489 BLO10_PSEAE 20 266 DBREF 2X02 B 19 19 PDB 2X02 2X02 19 19 DBREF 2X02 B 20 266 UNP P14489 BLO10_PSEAE 20 266 SEQRES 1 A 248 MET GLY SER ILE THR GLU ASN THR SER TRP ASN LYS GLU SEQRES 2 A 248 PHE SER ALA GLU ALA VAL ASN GLY VAL PHE VAL LEU CYS SEQRES 3 A 248 LYS SER SER SER LYS SER CYS ALA THR ASN ASP LEU ALA SEQRES 4 A 248 ARG ALA SER LYS GLU TYR LEU PRO ALA SER THR PHE KCX SEQRES 5 A 248 ILE PRO ASN ALA ILE ILE GLY LEU GLU THR GLY VAL ILE SEQRES 6 A 248 LYS ASN GLU HIS GLN VAL PHE LYS TRP ASP GLY LYS PRO SEQRES 7 A 248 ARG ALA MET LYS GLN TRP GLU ARG ASP LEU THR LEU ARG SEQRES 8 A 248 GLY ALA ILE GLN VAL SER ALA VAL PRO VAL PHE GLN GLN SEQRES 9 A 248 ILE ALA ARG GLU VAL GLY GLU VAL ARG MET GLN LYS TYR SEQRES 10 A 248 LEU LYS LYS PHE SER TYR GLY ASN GLN ASN ILE SER GLY SEQRES 11 A 248 GLY ILE ASP LYS PHE TRP LEU GLU GLY GLN LEU ARG ILE SEQRES 12 A 248 SER ALA VAL ASN GLN VAL GLU PHE LEU GLU SER LEU TYR SEQRES 13 A 248 LEU ASN LYS LEU SER ALA SER LYS GLU ASN GLN LEU ILE SEQRES 14 A 248 VAL LYS GLU ALA LEU VAL THR GLU ALA ALA PRO GLU TYR SEQRES 15 A 248 LEU VAL HIS SER LYS THR GLY PHE SER GLY VAL GLY THR SEQRES 16 A 248 GLU SER ASN PRO GLY VAL ALA TRP TRP VAL GLY TRP VAL SEQRES 17 A 248 GLU LYS GLU THR GLU VAL TYR PHE PHE ALA PHE ASN MET SEQRES 18 A 248 ASP ILE ASP ASN GLU SER LYS LEU PRO LEU ARG LYS SER SEQRES 19 A 248 ILE PRO THR LYS ILE MET GLU SER GLU GLY ILE ILE GLY SEQRES 20 A 248 GLY SEQRES 1 B 248 MET GLY SER ILE THR GLU ASN THR SER TRP ASN LYS GLU SEQRES 2 B 248 PHE SER ALA GLU ALA VAL ASN GLY VAL PHE VAL LEU CYS SEQRES 3 B 248 LYS SER SER SER LYS SER CYS ALA THR ASN ASP LEU ALA SEQRES 4 B 248 ARG ALA SER LYS GLU TYR LEU PRO ALA SER THR PHE KCX SEQRES 5 B 248 ILE PRO ASN ALA ILE ILE GLY LEU GLU THR GLY VAL ILE SEQRES 6 B 248 LYS ASN GLU HIS GLN VAL PHE LYS TRP ASP GLY LYS PRO SEQRES 7 B 248 ARG ALA MET LYS GLN TRP GLU ARG ASP LEU THR LEU ARG SEQRES 8 B 248 GLY ALA ILE GLN VAL SER ALA VAL PRO VAL PHE GLN GLN SEQRES 9 B 248 ILE ALA ARG GLU VAL GLY GLU VAL ARG MET GLN LYS TYR SEQRES 10 B 248 LEU LYS LYS PHE SER TYR GLY ASN GLN ASN ILE SER GLY SEQRES 11 B 248 GLY ILE ASP LYS PHE TRP LEU GLU GLY GLN LEU ARG ILE SEQRES 12 B 248 SER ALA VAL ASN GLN VAL GLU PHE LEU GLU SER LEU TYR SEQRES 13 B 248 LEU ASN LYS LEU SER ALA SER LYS GLU ASN GLN LEU ILE SEQRES 14 B 248 VAL LYS GLU ALA LEU VAL THR GLU ALA ALA PRO GLU TYR SEQRES 15 B 248 LEU VAL HIS SER LYS THR GLY PHE SER GLY VAL GLY THR SEQRES 16 B 248 GLU SER ASN PRO GLY VAL ALA TRP TRP VAL GLY TRP VAL SEQRES 17 B 248 GLU LYS GLU THR GLU VAL TYR PHE PHE ALA PHE ASN MET SEQRES 18 B 248 ASP ILE ASP ASN GLU SER LYS LEU PRO LEU ARG LYS SER SEQRES 19 B 248 ILE PRO THR LYS ILE MET GLU SER GLU GLY ILE ILE GLY SEQRES 20 B 248 GLY MODRES 2X02 KCX A 70 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 2X02 KCX B 70 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 70 12 HET KCX B 70 12 HET SO4 A1266 5 HET PG4 A1267 13 HET DMS A1268 4 HET DMS A1269 4 HET DMS A1270 4 HET PG4 B1266 7 HET DMS B1267 4 HET GOL B1268 6 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 SO4 O4 S 2- FORMUL 4 PG4 2(C8 H18 O5) FORMUL 5 DMS 4(C2 H6 O S) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *567(H2 O) HELIX 1 1 TRP A 28 ALA A 34 1 7 HELIX 2 2 ASP A 55 SER A 60 1 6 HELIX 3 3 PRO A 65 THR A 68 5 4 HELIX 4 4 PHE A 69 THR A 80 1 12 HELIX 5 5 MET A 99 GLU A 103 5 5 HELIX 6 6 LEU A 108 VAL A 114 1 7 HELIX 7 7 ALA A 116 GLY A 128 1 13 HELIX 8 8 GLY A 128 PHE A 139 1 12 HELIX 9 9 LYS A 152 GLY A 157 1 6 HELIX 10 10 ALA A 163 LEU A 175 1 13 HELIX 11 11 SER A 181 LEU A 192 1 12 HELIX 12 12 ASN A 243 LEU A 247 5 5 HELIX 13 13 PRO A 248 GLU A 261 1 14 HELIX 14 14 TRP B 28 GLU B 35 1 8 HELIX 15 15 ASP B 55 LYS B 61 1 7 HELIX 16 16 PRO B 65 THR B 68 5 4 HELIX 17 17 PHE B 69 THR B 80 1 12 HELIX 18 18 MET B 99 GLU B 103 5 5 HELIX 19 19 THR B 107 VAL B 114 1 8 HELIX 20 20 ALA B 116 GLY B 128 1 13 HELIX 21 21 GLY B 128 PHE B 139 1 12 HELIX 22 22 ALA B 163 LEU B 175 1 13 HELIX 23 23 SER B 181 LEU B 192 1 12 HELIX 24 24 ASN B 243 LEU B 247 5 5 HELIX 25 25 PRO B 248 GLU B 261 1 14 SHEET 1 AA 7 ILE A 22 GLU A 24 0 SHEET 2 AA 7 CYS A 51 THR A 53 1 O CYS A 51 N THR A 23 SHEET 3 AA 7 GLY A 39 LYS A 45 -1 O LEU A 43 N ALA A 52 SHEET 4 AA 7 GLU A 231 ILE A 241 -1 O PHE A 234 N CYS A 44 SHEET 5 AA 7 GLY A 218 LYS A 228 -1 O GLY A 218 N ILE A 241 SHEET 6 AA 7 TYR A 200 PHE A 208 -1 O LEU A 201 N GLU A 227 SHEET 7 AA 7 VAL A 193 ALA A 196 -1 N THR A 194 O VAL A 202 SHEET 1 AB 2 GLU A 62 TYR A 63 0 SHEET 2 AB 2 ILE A 161 SER A 162 -1 O ILE A 161 N TYR A 63 SHEET 1 AC 2 VAL A 89 PHE A 90 0 SHEET 2 AC 2 LEU A 106 THR A 107 -1 O LEU A 106 N PHE A 90 SHEET 1 BA 7 SER B 21 GLU B 24 0 SHEET 2 BA 7 SER B 50 THR B 53 1 O CYS B 51 N THR B 23 SHEET 3 BA 7 GLY B 39 LYS B 45 -1 O LEU B 43 N ALA B 52 SHEET 4 BA 7 GLU B 231 ILE B 241 -1 O PHE B 234 N CYS B 44 SHEET 5 BA 7 GLY B 218 LYS B 228 -1 O GLY B 218 N ILE B 241 SHEET 6 BA 7 TYR B 200 PHE B 208 -1 O LEU B 201 N GLU B 227 SHEET 7 BA 7 VAL B 193 ALA B 196 -1 N THR B 194 O VAL B 202 SHEET 1 BB 2 GLU B 62 TYR B 63 0 SHEET 2 BB 2 ILE B 161 SER B 162 -1 O ILE B 161 N TYR B 63 SSBOND 1 CYS A 44 CYS A 51 1555 1555 2.04 SSBOND 2 CYS B 44 CYS B 51 1555 1555 2.03 LINK C PHE A 69 N KCX A 70 1555 1555 1.34 LINK C KCX A 70 N ILE A 71 1555 1555 1.35 LINK C PHE B 69 N KCX B 70 1555 1555 1.34 LINK C KCX B 70 N ILE B 71 1555 1555 1.33 SITE 1 AC1 11 SER A 67 SER A 115 LYS A 205 THR A 206 SITE 2 AC1 11 GLY A 207 PHE A 208 ARG A 250 HOH A2060 SITE 3 AC1 11 HOH A2319 HOH A2320 HOH A2321 SITE 1 AC2 8 SER A 215 ASN A 216 HOH A2288 HOH A2322 SITE 2 AC2 8 HOH A2324 GLN B 158 ARG B 160 HOH B2137 SITE 1 AC3 4 HIS A 87 VAL A 89 TYR B 174 LEU B 175 SITE 1 AC4 4 TYR B 63 LEU B 64 SER B 209 VAL B 219 SITE 1 AC5 4 HOH A2324 GLU B 62 GLY B 142 HOH B2154 SITE 1 AC6 4 TYR A 63 LEU A 64 PRO A 217 HOH A2053 SITE 1 AC7 7 ASN A 29 PHE A 32 VAL A 37 ASN A 38 SITE 2 AC7 7 GLY A 39 ASN A 54 ASP A 55 SITE 1 AC8 7 ASN B 29 PHE B 32 VAL B 37 ASN B 38 SITE 2 AC8 7 GLY B 39 ASN B 54 ASP B 55 CRYST1 48.550 96.850 125.740 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007953 0.00000