HEADER OXIDOREDUCTASE 14-DEC-09 2X0I TITLE 2.9 A RESOLUTION STRUCTURE OF MALATE DEHYDROGENASE FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS IN COMPLEX WITH NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS DSM 4304; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ONE SHOT; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSJS1240 KEYWDS HYPERTHERMOPHILIC, OXIDOREDUCTASE, TRICARBOXYLIC ACID CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.IRIMIA,D.MADERN,G.ZACCAI,F.M.D.VELLIEUX,A.KARSHIKOFF,G.TIBBELIN, AUTHOR 2 R.LADENSTEIN,T.LIEN,N.-K.BIRKELAND REVDAT 4 20-DEC-23 2X0I 1 REMARK REVDAT 3 30-OCT-13 2X0I 1 SOURCE AUTHOR JRNL REMARK REVDAT 3 2 1 VERSN HET HETNAM HETSYN REVDAT 3 3 1 FORMUL SITE HETATM MASTER REVDAT 2 26-JAN-10 2X0I 1 REMARK REVDAT 1 22-DEC-09 2X0I 0 SPRSDE 22-DEC-09 2X0I 1OJS JRNL AUTH A.IRIMIA,F.M.D.VELLIEUX,D.MADERN,G.ZACCAI,A.KARSHIKOFF, JRNL AUTH 2 G.TIBBELIN,R.LADENSTEIN,T.LIEN,N.-K.BIRKELAND JRNL TITL THE 2.9A RESOLUTION CRYSTAL STRUCTURE OF MALATE JRNL TITL 2 DEHYDROGENASE FROM ARCHAEOGLOBUS FULGIDUS: MECHANISMS OF JRNL TITL 3 OLIGOMERISATION AND THERMAL STABILISATION. JRNL REF J.MOL.BIOL. V. 335 343 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 14659762 JRNL DOI 10.1016/J.JMB.2003.10.054 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.MADERN,C.EBEL,H.A.DALE,T.LIEN,I.H.STEEN,N.K.BIRKELAND, REMARK 1 AUTH 2 G.ZACCAI REMARK 1 TITL DIFFERENCES IN THE OLIGOMERIC STATES OF THE LDH- LIKE REMARK 1 TITL 2 L-MALDH FROM THE HYPERTHERMOPHILIC ARCHAEA METHANOCOCCUS REMARK 1 TITL 3 JANNASCHII AND ARCHAEOGLOBUS FULGIDUS. REMARK 1 REF BIOCHEMISTRY V. 40 10310 2001 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 11513609 REMARK 1 DOI 10.1021/BI010168C REMARK 1 REFERENCE 2 REMARK 1 AUTH A.S.LANGELANDSVIK,I.H.STEEN,N.K.BIRKELAND,T.LIEN REMARK 1 TITL PROPERTIES AND PRIMARY STRUCTURE OF A THERMOSTABLE L-MALATE REMARK 1 TITL 2 DEHYDROGENASE FROM ARCHAEOGLOBUS FULGIDUS REMARK 1 REF ARCH.MICROBIOL. V. 168 59 1997 REMARK 1 REFN ISSN 0302-8933 REMARK 1 PMID 9211715 REMARK 1 DOI 10.1007/S002030050470 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.3 REMARK 3 NUMBER OF REFLECTIONS : 8932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.4926 - 4.6165 0.91 2371 164 0.1449 0.2071 REMARK 3 2 4.6165 - 3.6644 0.91 2291 116 0.1284 0.2100 REMARK 3 3 3.6644 - 3.2013 0.87 2125 135 0.1657 0.2203 REMARK 3 4 3.2013 - 2.9086 0.67 1653 77 0.1971 0.2690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 62.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.04740 REMARK 3 B22 (A**2) : -10.04740 REMARK 3 B33 (A**2) : 20.09470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2319 REMARK 3 ANGLE : 1.461 3136 REMARK 3 CHIRALITY : 0.124 360 REMARK 3 PLANARITY : 0.006 399 REMARK 3 DIHEDRAL : 20.859 906 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 22:103) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2929 31.8706 12.1162 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.3452 REMARK 3 T33: 0.2103 T12: 0.0201 REMARK 3 T13: -0.0117 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 1.0697 L22: 1.4330 REMARK 3 L33: 0.9962 L12: -0.7768 REMARK 3 L13: -1.0148 L23: 0.9670 REMARK 3 S TENSOR REMARK 3 S11: -0.2138 S12: -0.3614 S13: 0.1248 REMARK 3 S21: 0.0071 S22: 0.1517 S23: -0.1428 REMARK 3 S31: 0.1474 S32: 0.0044 S33: 0.0096 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 105:172) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0511 40.9231 12.5001 REMARK 3 T TENSOR REMARK 3 T11: 0.2450 T22: 0.3397 REMARK 3 T33: 0.2527 T12: -0.0107 REMARK 3 T13: -0.0009 T23: -0.0748 REMARK 3 L TENSOR REMARK 3 L11: 0.9688 L22: 0.9987 REMARK 3 L33: 0.4730 L12: -0.5818 REMARK 3 L13: -0.3447 L23: 0.1998 REMARK 3 S TENSOR REMARK 3 S11: -0.1377 S12: -0.2786 S13: -0.0526 REMARK 3 S21: -0.0766 S22: -0.0693 S23: 0.1715 REMARK 3 S31: 0.0112 S32: 0.0134 S33: 0.0692 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 173:219) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8857 52.1884 -9.3313 REMARK 3 T TENSOR REMARK 3 T11: 0.3970 T22: 0.3482 REMARK 3 T33: 0.3557 T12: 0.0666 REMARK 3 T13: 0.0136 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.1561 L22: 0.7646 REMARK 3 L33: 0.8342 L12: -0.3352 REMARK 3 L13: 0.5274 L23: -0.3883 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: 0.0413 S13: 0.1970 REMARK 3 S21: -0.0900 S22: -0.3380 S23: -0.0025 REMARK 3 S31: 0.0010 S32: 0.0492 S33: 0.1152 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 220:244) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7504 41.6763 -11.9056 REMARK 3 T TENSOR REMARK 3 T11: 0.3308 T22: 0.4246 REMARK 3 T33: 0.6868 T12: 0.0811 REMARK 3 T13: -0.2251 T23: -0.0908 REMARK 3 L TENSOR REMARK 3 L11: 0.6085 L22: 4.5118 REMARK 3 L33: 0.9223 L12: -1.2183 REMARK 3 L13: 0.4027 L23: -1.3357 REMARK 3 S TENSOR REMARK 3 S11: -0.2450 S12: 0.0665 S13: -0.1970 REMARK 3 S21: -0.2695 S22: 0.2436 S23: 1.0068 REMARK 3 S31: -0.0731 S32: -0.1480 S33: -0.2568 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 245:297) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4126 49.7586 7.2185 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.2514 REMARK 3 T33: 0.3275 T12: -0.0101 REMARK 3 T13: 0.0125 T23: -0.1160 REMARK 3 L TENSOR REMARK 3 L11: 0.5430 L22: 0.4174 REMARK 3 L33: 0.6142 L12: 0.0881 REMARK 3 L13: -0.0882 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.1231 S13: 0.2412 REMARK 3 S21: -0.1433 S22: 0.1271 S23: 0.0186 REMARK 3 S31: -0.0055 S32: 0.0822 S33: -0.1205 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 298:331) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8095 53.5407 5.1120 REMARK 3 T TENSOR REMARK 3 T11: 0.3826 T22: 0.3834 REMARK 3 T33: 0.6989 T12: 0.0376 REMARK 3 T13: 0.0144 T23: -0.1332 REMARK 3 L TENSOR REMARK 3 L11: 0.5683 L22: 0.8092 REMARK 3 L33: 1.2036 L12: -0.5325 REMARK 3 L13: 0.0205 L23: -0.3300 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: -0.0961 S13: 0.0299 REMARK 3 S21: 0.0395 S22: 0.1485 S23: 0.2202 REMARK 3 S31: -0.3902 S32: -0.2652 S33: -0.0807 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1290042062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND CRYSTALS REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : BIOMOL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8949 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 59.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.6 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2HLP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INITIAL PROTEIN DROPLET: 16 MG/ML REMARK 280 PROTEIN, 10 MM NADH, 20 M RESERVOIR: 1.6 M AMMONIUM SULPHATE, 20% REMARK 280 (V/V) GLYCEROL, 80 M DROPLET: EQUAL VOLUMES OF INITIAL PROTEIN REMARK 280 DROPLET AND RESERVOIR WERE MIXED., PH 4.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.64700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.48200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.48200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.82350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.48200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.48200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.47050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.48200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.48200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.82350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.48200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.48200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.47050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.64700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 103 -108.83 -178.98 REMARK 500 PRO A 105 70.81 6.74 REMARK 500 MET A 107 126.51 -18.51 REMARK 500 GLU A 129 35.74 -90.86 REMARK 500 ASN A 130 -48.82 -152.32 REMARK 500 ARG A 157 0.54 -65.67 REMARK 500 ALA A 182 146.14 -34.97 REMARK 500 ILE A 187A 95.27 -62.29 REMARK 500 ALA A 189 104.35 -169.63 REMARK 500 PHE A 208 144.68 -174.64 REMARK 500 ILE A 247 -60.90 -130.20 REMARK 500 ASP A 264 52.40 39.65 REMARK 500 SER A 308 153.40 -34.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 3000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X06 RELATED DB: PDB REMARK 900 SULFOLACTATE DEHYDROGENASE FROM METHANOCALDOCOCCUS JANNASCHII REMARK 900 RELATED ID: 2X0J RELATED DB: PDB REMARK 900 2.8 A RESOLUTION STRUCTURE OF MALATE DEHYDROGENASE FROM REMARK 900 ARCHAEOGLOBUS FULGIDUS IN COMPLEX WITH ETHENO-NAD REMARK 900 RELATED ID: 2X0N RELATED DB: PDB REMARK 900 STRUCTURE OF GLYCOSOMAL GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 900 FROM TRYPANOSOMA BRUCEI DETERMINED FROM LAUE DATA REMARK 900 RELATED ID: 2X0R RELATED DB: PDB REMARK 900 R207S,R292S MUTANT OF MALATE DEHYDROGENASE FROM THE HALOPHILIC REMARK 900 ARCHAEON HALOARCULA MARISMORTUI (HOLO FORM) REMARK 900 RELATED ID: 2X0S RELATED DB: PDB REMARK 900 3.0 A RESOLUTION CRYSTAL STRUCTURE OF GLYCOSOMAL PYRUVATE PHOSPHATE REMARK 900 DIKINASE FROM TRYPANOSOMA BRUCEI DBREF 2X0I A 22 331 UNP O08349 MDH_ARCFU 1 294 SEQRES 1 A 294 MET LYS LEU GLY PHE VAL GLY ALA GLY ARG VAL GLY SER SEQRES 2 A 294 THR SER ALA PHE THR CYS LEU LEU ASN LEU ASP VAL ASP SEQRES 3 A 294 GLU ILE ALA LEU VAL ASP ILE ALA GLU ASP LEU ALA VAL SEQRES 4 A 294 GLY GLU ALA MET ASP LEU ALA HIS ALA ALA ALA GLY ILE SEQRES 5 A 294 ASP LYS TYR PRO LYS ILE VAL GLY GLY ALA ASP TYR SER SEQRES 6 A 294 LEU LEU LYS GLY SER GLU ILE ILE VAL VAL THR ALA GLY SEQRES 7 A 294 LEU ALA ARG LYS PRO GLY MET THR ARG LEU ASP LEU ALA SEQRES 8 A 294 HIS LYS ASN ALA GLY ILE ILE LYS ASP ILE ALA LYS LYS SEQRES 9 A 294 ILE VAL GLU ASN ALA PRO GLU SER LYS ILE LEU VAL VAL SEQRES 10 A 294 THR ASN PRO MET ASP VAL MET THR TYR ILE MET TRP LYS SEQRES 11 A 294 GLU SER GLY LYS PRO ARG ASN GLU VAL PHE GLY MET GLY SEQRES 12 A 294 ASN GLN LEU ASP SER GLN ARG LEU LYS GLU ARG LEU TYR SEQRES 13 A 294 ASN ALA GLY ALA ARG ASN ILE ARG ARG ALA TRP ILE ILE SEQRES 14 A 294 GLY GLU HIS GLY ASP SER MET PHE VAL ALA LYS SER LEU SEQRES 15 A 294 ALA ASP PHE ASP GLY GLU VAL ASP TRP GLU ALA VAL GLU SEQRES 16 A 294 ASN ASP VAL ARG PHE VAL ALA ALA GLU VAL ILE LYS ARG SEQRES 17 A 294 LYS GLY ALA THR ILE PHE GLY PRO ALA VAL ALA ILE TYR SEQRES 18 A 294 ARG MET VAL LYS ALA VAL VAL GLU ASP THR GLY GLU ILE SEQRES 19 A 294 ILE PRO THR SER MET ILE LEU GLN GLY GLU TYR GLY ILE SEQRES 20 A 294 GLU ASN VAL ALA VAL GLY VAL PRO ALA LYS LEU GLY LYS SEQRES 21 A 294 ASN GLY ALA GLU VAL ALA ASP ILE LYS LEU SER ASP GLU SEQRES 22 A 294 GLU ILE GLU LYS LEU ARG ASN SER ALA LYS ILE LEU ARG SEQRES 23 A 294 GLU ARG LEU GLU GLU LEU GLY TYR HET NAI A1000 44 HET SO4 A2000 5 HET NA A3000 1 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN NAI NADH FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 SO4 O4 S 2- FORMUL 4 NA NA 1+ FORMUL 5 HOH *39(H2 O) HELIX 1 1 GLY A 30 LEU A 44 1 15 HELIX 2 2 ALA A 55 GLY A 71B 1 18 HELIX 3 3 ASP A 84B LYS A 89 5 6 HELIX 4 4 THR A 108 GLU A 129 1 22 HELIX 5 5 PRO A 141 SER A 153 1 13 HELIX 6 6 GLY A 164 ALA A 179 1 16 HELIX 7 7 LYS A 203 ALA A 206 5 4 HELIX 8 8 ASP A 224 GLY A 244 1 21 HELIX 9 9 ILE A 247 GLU A 263 1 17 HELIX 10 10 GLU A 278 GLY A 280 5 3 HELIX 11 11 SER A 308 GLU A 328 1 21 SHEET 1 AA 6 LYS A 77 GLY A 81 0 SHEET 2 AA 6 GLU A 48 VAL A 52 1 O ILE A 49 N VAL A 79 SHEET 3 AA 6 LYS A 23 VAL A 27 1 O LEU A 24 N ALA A 50 SHEET 4 AA 6 ILE A 93 VAL A 96 1 O ILE A 93 N GLY A 25 SHEET 5 AA 6 LYS A 134 VAL A 137 1 O LYS A 134 N ILE A 94 SHEET 6 AA 6 VAL A 160 GLY A 162 1 O PHE A 161 N VAL A 137 SHEET 1 AB 2 ARG A 183 ARG A 188 0 SHEET 2 AB 2 ASP A 207 ASP A 209 -1 O ASP A 207 N ARG A 187B SHEET 1 AC 2 ILE A 191 ILE A 192 0 SHEET 2 AC 2 PHE A 200 VAL A 201 -1 O PHE A 200 N ILE A 192 SHEET 1 AD 3 ILE A 268 GLN A 276 0 SHEET 2 AD 3 GLU A 283 GLY A 294 -1 N ASN A 284 O LEU A 275 SHEET 3 AD 3 GLY A 297 VAL A 302 -1 O GLY A 297 N GLY A 294 CISPEP 1 ASN A 140 PRO A 141 0 0.34 SITE 1 AC1 25 GLY A 30 ARG A 31 VAL A 32 ASP A 53 SITE 2 AC1 25 ILE A 54 LEU A 58 TYR A 85 THR A 97 SITE 3 AC1 25 ALA A 98 GLY A 99 LEU A 100 ILE A 119 SITE 4 AC1 25 VAL A 138 THR A 139 ASN A 140 MET A 142 SITE 5 AC1 25 MET A 163 LEU A 167 HIS A 195 THR A 246 SITE 6 AC1 25 PRO A 250 SO4 A2000 HOH A2036 HOH A2037 SITE 7 AC1 25 HOH A2038 SITE 1 AC2 7 ASN A 140 LEU A 167 ARG A 171 HIS A 195 SITE 2 AC2 7 ALA A 236 THR A 246 NAI A1000 SITE 1 AC3 1 GLY A 294 CRYST1 112.964 112.964 71.294 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014026 0.00000