HEADER HYDROLASE 04-JAN-10 2X1V TITLE CRYSTAL STRUCTURE OF THE ACTIVATING H-RAS I163F MUTANT IN COSTELLO TITLE 2 SYNDROME, BOUND TO MG-GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: G-DOMAIN, RESIDUES 1-166; COMPND 5 SYNONYM: TRANSFORMING PROTEIN P21, P21RAS, H-RAS-1, C-H-RAS, HA-RAS; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS S-NITROSYLATION, DISEASE MUTATION, PALMITATE, HYDROLASE, METHYLATION, KEYWDS 2 PRENYLATION, CELL MEMBRANE, PROTO-ONCOGENE, GTPASE PROTEIN, GOLGI KEYWDS 3 APPARATUS EXPDTA X-RAY DIFFRACTION AUTHOR K.ANAND REVDAT 4 20-DEC-23 2X1V 1 REMARK REVDAT 3 02-FEB-10 2X1V 1 REMARK REVDAT 2 19-JAN-10 2X1V 1 JRNL REVDAT 1 12-JAN-10 2X1V 0 JRNL AUTH K.ANAND,A.PARRET,E.DENAYER,B.PETROVA,E.LEGIUS,K.SCHEFFZEK JRNL TITL CRYSTAL STRUCTURE OF THE ACTIVATING H-RAS I163F MUTANT IN JRNL TITL 2 COSTELLO SYNDROME, BOUND TO MG-GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1655 - 3.2508 0.94 2888 152 0.1328 0.1779 REMARK 3 2 3.2508 - 2.5809 0.95 2871 152 0.1905 0.2400 REMARK 3 3 2.5809 - 2.2548 0.95 2869 151 0.2281 0.2597 REMARK 3 4 2.2548 - 2.0487 0.95 2846 149 0.2384 0.2579 REMARK 3 5 2.0487 - 1.9019 0.95 2861 151 0.2437 0.2630 REMARK 3 6 1.9019 - 1.7898 0.95 2817 148 0.2859 0.3113 REMARK 3 7 1.7898 - 1.7002 0.95 2856 151 0.2787 0.3116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.55 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 96.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.050 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.14430 REMARK 3 B22 (A**2) : -3.14430 REMARK 3 B33 (A**2) : 6.28860 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4820 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1128 REMARK 3 ANGLE : 1.089 1529 REMARK 3 CHIRALITY : 0.066 177 REMARK 3 PLANARITY : 0.003 193 REMARK 3 DIHEDRAL : 19.677 405 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 16.9216 -28.1230 -0.8268 REMARK 3 T TENSOR REMARK 3 T11: 0.1095 T22: 0.1362 REMARK 3 T33: 0.1837 T12: 0.0011 REMARK 3 T13: -0.0115 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1671 L22: 0.9188 REMARK 3 L33: 0.2546 L12: 0.0522 REMARK 3 L13: 0.0949 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: -0.0769 S13: 0.0900 REMARK 3 S21: -0.0268 S22: 0.0401 S23: -0.1261 REMARK 3 S31: 0.0032 S32: -0.0170 S33: 0.0111 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HRAS ILE163PHE PATIENT MUTANT LACK BOTH REMARK 3 LOOPS THAT ARE INVOLVED IN THE (DISORDERED RESIDUE 30-38 AND 58- REMARK 3 69) SWITCH I AND II. REMARK 4 REMARK 4 2X1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290041526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.85 REMARK 200 R MERGE FOR SHELL (I) : 0.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4Q21 REMARK 200 REMARK 200 REMARK: DATA WERE TWINNED AND REFINED USING PHENIX.XTRIAGE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% POLYETHYLENE GLYCOL (PEG) 6000, REMARK 280 100 MM HEPES PH 7.4, 150 MM MGCL2., PH 7.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.44000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.44000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ILE 163 TO PHE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 30 REMARK 465 GLU A 31 REMARK 465 TYR A 32 REMARK 465 ASP A 33 REMARK 465 PRO A 34 REMARK 465 THR A 35 REMARK 465 ILE A 36 REMARK 465 GLU A 37 REMARK 465 GLY A 60 REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 465 MET A 67 REMARK 465 ARG A 68 REMARK 465 ASP A 69 REMARK 465 GLN A 70 REMARK 465 TYR A 71 REMARK 465 MET A 72 REMARK 465 ARG A 73 REMARK 465 THR A 74 REMARK 465 GLY A 75 REMARK 465 GLN A 165 REMARK 465 HIS A 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LEU A 52 CG CD1 CD2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 154 OD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 145 O THR A 148 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 76 CD GLU A 76 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 55.02 70.35 REMARK 500 LEU A 6 52.63 38.23 REMARK 500 LYS A 117 36.28 76.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2010 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A2011 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2013 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A2018 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A2019 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A2022 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A2033 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A2053 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1165 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5P21 RELATED DB: PDB REMARK 900 RELATED ID: 2CL0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN REMARK 900 COMPLEX WITH GPPNHP REMARK 900 RELATED ID: 1CTQ RELATED DB: PDB REMARK 900 STRUCTURE OF P21RAS IN COMPLEX WITH GPPNHP AT 100 K REMARK 900 RELATED ID: 1CRQ RELATED DB: PDB REMARK 900 RELATED ID: 2CL6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN REMARK 900 COMPLEX WITH S- CAGED GTP REMARK 900 RELATED ID: 2CLD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN REMARK 900 COMPLEX WITH GDP ( 2) REMARK 900 RELATED ID: 2GDP RELATED DB: PDB REMARK 900 RELATED ID: 121P RELATED DB: PDB REMARK 900 RELATED ID: 1PLL RELATED DB: PDB REMARK 900 RELATED ID: 1IAQ RELATED DB: PDB REMARK 900 C-H-RAS P21 PROTEIN MUTANT WITH THR 35 REPLACED BY SER(T35S) REMARK 900 COMPLEXED WITH GUANOSINE-5'-[B,G-IMIDO] TRIPHOSPHATE REMARK 900 RELATED ID: 1AGP RELATED DB: PDB REMARK 900 RELATED ID: 1CLU RELATED DB: PDB REMARK 900 H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA ,GAMMA-IMIDO- GTP REMARK 900 RELATED ID: 1BKD RELATED DB: PDB REMARK 900 COMPLEX OF HUMAN H-RAS WITH HUMAN SOS-1 REMARK 900 RELATED ID: 1XD2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TERNARY RAS:SOS:RAS *GDP COMPLEX REMARK 900 RELATED ID: 1NVX RELATED DB: PDB REMARK 900 STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OFTHE RAS- REMARK 900 SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS REMARK 900 RELATED ID: 1ZVQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE Q61G MUTANT OF RAS IN THE GDP-BOUND FORM REMARK 900 RELATED ID: 721P RELATED DB: PDB REMARK 900 RELATED ID: 1CRP RELATED DB: PDB REMARK 900 RELATED ID: 6Q21 RELATED DB: PDB REMARK 900 RELATED ID: 1XCM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GPPNHP-BOUND H- RAS G60A MUTANT REMARK 900 RELATED ID: 2VH5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HRAS(G12V) - ANTI-RAS FV (DISULFIDE FREE REMARK 900 MUTANT) COMPLEX REMARK 900 RELATED ID: 2CLC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN REMARK 900 COMPLEX WITH GTP (2) REMARK 900 RELATED ID: 1JAI RELATED DB: PDB REMARK 900 H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITHGUANOSINE-5'-[BETA, REMARK 900 GAMMA-METHYLENE] TRIPHOSPHATEAND MANGANESE REMARK 900 RELATED ID: 1IOZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-HA-RAS PROTEIN PREPARED BY THECELL-FREE REMARK 900 SYNTHESIS REMARK 900 RELATED ID: 1P2U RELATED DB: PDB REMARK 900 H-RAS IN 50% ISOPROPANOL REMARK 900 RELATED ID: 2CE2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN REMARK 900 COMPLEX WITH GDP REMARK 900 RELATED ID: 1LFD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACTIVE RAS PROTEIN COMPLEXED WITHTHE RAS- REMARK 900 INTERACTING DOMAIN OF RALGDS REMARK 900 RELATED ID: 1K8R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAS-BRY2RBD COMPLEX REMARK 900 RELATED ID: 621P RELATED DB: PDB REMARK 900 RELATED ID: 1CRR RELATED DB: PDB REMARK 900 RELATED ID: 821P RELATED DB: PDB REMARK 900 RELATED ID: 1AA9 RELATED DB: PDB REMARK 900 HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1NVU RELATED DB: PDB REMARK 900 STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OFTHE RAS- REMARK 900 SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS REMARK 900 RELATED ID: 4Q21 RELATED DB: PDB REMARK 900 RELATED ID: 1ZW6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GTP-BOUND FORM OF RASQ61G REMARK 900 RELATED ID: 2CL7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN REMARK 900 COMPLEX WITH GTP REMARK 900 RELATED ID: 1QRA RELATED DB: PDB REMARK 900 STRUCTURE OF P21RAS IN COMPLEX WITH GTP AT 100 K REMARK 900 RELATED ID: 1JAH RELATED DB: PDB REMARK 900 H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITHGUANOSINE-5'-[BETA, REMARK 900 GAMMA-METHYLENE] TRIPHOSPHATE ANDMAGNESIUM REMARK 900 RELATED ID: 221P RELATED DB: PDB REMARK 900 RELATED ID: 1P2S RELATED DB: PDB REMARK 900 H-RAS 166 IN 50% 2,2,2 TRIFLOUROETHANOL REMARK 900 RELATED ID: 2C5L RELATED DB: PDB REMARK 900 STRUCTURE OF PLC EPSILON RAS ASSOCIATION DOMAIN WITH HRAS REMARK 900 RELATED ID: 1P2V RELATED DB: PDB REMARK 900 H-RAS 166 IN 60 % 1,6 HEXANEDIOL REMARK 900 RELATED ID: 1RVD RELATED DB: PDB REMARK 900 H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA ,GAMMA-IMIDO- GTP REMARK 900 RELATED ID: 1LF5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RASA59G IN THE GDP- BOUND FORM REMARK 900 RELATED ID: 1NVW RELATED DB: PDB REMARK 900 STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OFTHE RAS- REMARK 900 SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS REMARK 900 RELATED ID: 2Q21 RELATED DB: PDB REMARK 900 RELATED ID: 421P RELATED DB: PDB REMARK 900 RELATED ID: 2EVW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RASP21 IN REMARK 900 COMPLEX WITH R-CAGED GTP REMARK 900 RELATED ID: 521P RELATED DB: PDB REMARK 900 RELATED ID: 1Q21 RELATED DB: PDB REMARK 900 RELATED ID: 1WQ1 RELATED DB: PDB REMARK 900 RAS-RASGAP COMPLEX REMARK 900 RELATED ID: 1GNP RELATED DB: PDB REMARK 900 RELATED ID: 1HE8 RELATED DB: PDB REMARK 900 RAS G12V - PI 3-KINASE GAMMA COMPLEX REMARK 900 RELATED ID: 1GNQ RELATED DB: PDB REMARK 900 RELATED ID: 1P2T RELATED DB: PDB REMARK 900 H-RAS 166 IN AQUEOUS MOTHER LIQOUR, RT REMARK 900 RELATED ID: 1NVV RELATED DB: PDB REMARK 900 STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OFTHE RAS- REMARK 900 SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS REMARK 900 RELATED ID: 1XJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GDP-BOUND FORM OF THE RASG60AMUTANT REMARK 900 RELATED ID: 2UZI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HRAS(G12V) - ANTI-RAS FV COMPLEX REMARK 900 RELATED ID: 1GNR RELATED DB: PDB REMARK 900 RELATED ID: 1PLK RELATED DB: PDB REMARK 900 RELATED ID: 1LF0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RASA59G IN THE GTP- BOUND FORM DBREF 2X1V A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 2X1V PHE A 163 UNP P01112 ILE 163 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU PHE ARG GLN HIS HET GDP A1165 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 HOH *116(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 ASN A 86 ASP A 92 1 7 HELIX 3 3 ASP A 92 ASP A 105 1 14 HELIX 4 4 GLU A 126 GLY A 138 1 13 HELIX 5 5 GLY A 151 GLU A 162 1 12 SHEET 1 AA 4 VAL A 7 GLY A 10 0 SHEET 2 AA 4 PHE A 78 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 3 AA 4 MET A 111 ASN A 116 1 O VAL A 112 N CYS A 80 SHEET 4 AA 4 TYR A 141 GLU A 143 1 O ILE A 142 N GLY A 115 SHEET 1 AB 2 SER A 39 ILE A 46 0 SHEET 2 AB 2 GLU A 49 LEU A 56 -1 O GLU A 49 N ILE A 46 CISPEP 1 TYR A 4 LYS A 5 0 -15.26 SITE 1 AC1 19 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 19 SER A 17 ALA A 18 PHE A 28 ASN A 116 SITE 3 AC1 19 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 4 AC1 19 ALA A 146 LYS A 147 HOH A2111 HOH A2112 SITE 5 AC1 19 HOH A2113 HOH A2115 HOH A2116 CRYST1 73.140 73.140 62.880 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013672 0.007894 0.000000 0.00000 SCALE2 0.000000 0.015788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015903 0.00000