HEADER PHOTOSYNTHESIS 09-JAN-10 2X1Z TITLE STRUCTURE OF PERIDININ-CHLOROPHYLL-PROTEIN RECONSTITUTED WITH CHL-D COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIDININ-CHLOROPHYLL A-BINDING PROTEIN, CHLOROPLASTIC; COMPND 3 CHAIN: M; COMPND 4 FRAGMENT: RESIDUES 57-207; COMPND 5 SYNONYM: PCP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMPHIDINIUM CARTERAE; SOURCE 3 ORGANISM_TAXID: 2961; SOURCE 4 STRAIN: CS-21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PND707 KEYWDS LIGHT-HARVESTING POLYPEPTIDE, LIGHT HARVESTING PROTEIN, ALPHA KEYWDS 2 HELICAL, PHOTOSYNTHESIS, TRANSIT PEPTIDE, CHROMOPHORE, CHLOROPLAST, KEYWDS 3 CAROTENOIDS EXPDTA X-RAY DIFFRACTION AUTHOR T.SCHULTE,R.G.HILLER,E.HOFMANN REVDAT 5 20-DEC-23 2X1Z 1 REMARK LINK REVDAT 4 06-FEB-19 2X1Z 1 REMARK REVDAT 3 30-JAN-19 2X1Z 1 REMARK REVDAT 2 09-MAR-10 2X1Z 1 JRNL REVDAT 1 09-FEB-10 2X1Z 0 JRNL AUTH T.SCHULTE,R.G.HILLER,E.HOFMANN JRNL TITL X-RAY STRUCTURES OF THE PERIDININ-CHLOROPHYLL-PROTEIN JRNL TITL 2 RECONSTITUTED WITH DIFFERENT CHLOROPHYLLS. JRNL REF FEBS LETT. V. 584 973 2010 JRNL REFN ISSN 0014-5793 JRNL PMID 20102711 JRNL DOI 10.1016/J.FEBSLET.2010.01.041 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1393 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1600 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1120 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 334 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1582 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2197 ; 3.544 ; 2.214 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 4.770 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;34.108 ;26.522 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 218 ;13.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 7.227 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 233 ; 0.263 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1168 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 811 ; 1.173 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1302 ; 1.991 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 771 ; 3.414 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 882 ; 5.190 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2X1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00789 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 43.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3IIS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CDCL2, 0,1M SODIUM ACETATE PH REMARK 280 4.6, 20-24% PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.29000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.99500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.29000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.99500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.62000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.29000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.99500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.62000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.29000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.99500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -278.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD CD M 1173 O HOH M 2148 1.74 REMARK 500 O HOH M 2179 O HOH M 2180 1.77 REMARK 500 O HOH M 2032 O HOH M 2033 1.77 REMARK 500 O HOH M 2021 O HOH M 2028 1.88 REMARK 500 ND2 ASN M 102 O HOH M 2147 2.13 REMARK 500 O HOH M 2093 O HOH M 2151 2.14 REMARK 500 OE1 GLU M 64 O HOH M 2112 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH M 2070 O HOH M 2153 3455 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA M 83 CA ALA M 83 CB 0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH M2004 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M1171 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU M 2 OE1 REMARK 620 2 ASP M 5 OD2 96.9 REMARK 620 3 HOH M2011 O 82.6 170.3 REMARK 620 4 HOH M2021 O 157.5 74.4 109.4 REMARK 620 5 HOH M2028 O 107.5 97.3 92.0 54.7 REMARK 620 6 HOH M2046 O 129.7 87.3 85.6 71.5 121.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M1171 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU M 2 OE2 REMARK 620 2 GLU M 2 OE1 67.9 REMARK 620 3 HOH M2011 O 127.7 110.2 REMARK 620 4 HOH M2013 O 79.9 133.7 64.9 REMARK 620 5 HOH M2046 O 104.7 154.9 93.4 63.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M1172 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP M 5 OD1 REMARK 620 2 ASP M 5 OD2 53.0 REMARK 620 3 ASP M 22 OD2 144.2 91.5 REMARK 620 4 CL M1161 CL 101.2 154.2 114.1 REMARK 620 5 HOH M2007 O 82.3 81.3 88.1 96.3 REMARK 620 6 HOH M2047 O 93.6 83.5 86.1 100.2 163.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M1175 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU M 39 OE1 REMARK 620 2 CL M1162 CL 89.4 REMARK 620 3 HOH M2080 O 103.3 115.8 REMARK 620 4 HOH M2160 O 105.7 112.2 123.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M1176 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU M 39 OE2 REMARK 620 2 HOH M2085 O 140.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA M1163 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP M 55 OD1 REMARK 620 2 ASP M 55 OD2 50.4 REMARK 620 3 CL M1166 CL 84.1 95.5 REMARK 620 4 HOH M2102 O 92.1 103.2 152.3 REMARK 620 5 HOH M2103 O 148.5 98.6 94.9 102.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA M1164 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS M 68 NZ REMARK 620 2 ASP M 84 OD2 110.5 REMARK 620 3 ASP M 84 OD1 66.1 44.5 REMARK 620 4 HOH M2127 O 128.0 82.1 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M1173 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP M 106 OD2 REMARK 620 2 ASP M 106 OD1 54.4 REMARK 620 3 HOH M2093 O 88.4 91.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M1174 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP M 109 OD2 REMARK 620 2 ASP M 109 OD1 51.5 REMARK 620 3 ASP M 116 OD2 82.9 91.0 REMARK 620 4 ASP M 116 OD1 133.6 105.4 55.1 REMARK 620 5 HOH M2156 O 115.0 89.9 157.1 102.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD M1174 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP M 109 OD2 REMARK 620 2 ASP M 116 OD2 90.8 REMARK 620 3 HOH M2154 O 83.4 94.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CL7 M1151 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH M2116 O REMARK 620 2 CL7 M1151 NA 102.0 REMARK 620 3 CL7 M1151 NB 95.1 90.2 REMARK 620 4 CL7 M1151 ND 98.3 91.6 165.9 REMARK 620 5 CL7 M1151 NC 91.9 166.1 89.4 85.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL7 M 1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PID M 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PID M 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PID M 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PID M 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGD M 1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 1172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 1173 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 1175 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD M 1176 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL M 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL M 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL M 1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL M 1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA M 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA M 1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG M 1165 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X21 RELATED DB: PDB REMARK 900 STRUCTURE OF PERIDININ-CHLOROPHYLL-PROTEIN RECONSTITUTED WITH BCHL-A REMARK 900 RELATED ID: 1PPR RELATED DB: PDB REMARK 900 PERIDININ-CHLOROPHYLL-PROTEIN OF AMPHIDINIUM CARTERAE REMARK 900 RELATED ID: 2X20 RELATED DB: PDB REMARK 900 STRUCTURE OF PERIDININ-CHLOROPHYLL-PROTEIN RECONSTITUTED WITH CHL-B DBREF 2X1Z M 0 150 UNP P80484 PCP1_AMPCA 57 207 SEQADV 2X1Z SER M 87 UNP P80484 ASN 144 CONFLICT SEQADV 2X1Z ASN M 128 UNP P80484 SER 185 CONFLICT SEQRES 1 M 151 ALA ASP GLU ILE GLY ASP ALA ALA LYS LYS LEU GLY ASP SEQRES 2 M 151 ALA SER TYR ALA PHE ALA LYS GLU VAL ASP TRP ASN ASN SEQRES 3 M 151 GLY ILE PHE LEU GLN ALA PRO GLY LYS LEU GLN PRO LEU SEQRES 4 M 151 GLU ALA LEU LYS ALA ILE ASP LYS MET ILE VAL MET GLY SEQRES 5 M 151 ALA ALA ALA ASP PRO LYS LEU LEU LYS ALA ALA ALA GLU SEQRES 6 M 151 ALA HIS HIS LYS ALA ILE GLY SER VAL SER GLY PRO ASN SEQRES 7 M 151 GLY VAL THR SER ARG ALA ASP TRP ASP SER VAL ASN ALA SEQRES 8 M 151 ALA LEU GLY ARG VAL ILE ALA SER VAL PRO GLU ASN MET SEQRES 9 M 151 VAL MET ASP VAL TYR ASP SER VAL SER LYS ILE THR ASP SEQRES 10 M 151 PRO LYS VAL PRO ALA TYR MET LYS SER LEU VAL ASN GLY SEQRES 11 M 151 ALA ASP ALA GLU LYS ALA TYR GLU GLY PHE LEU ALA PHE SEQRES 12 M 151 LYS ASP VAL VAL LYS LYS SER GLN HET PID M 611 49 HET PID M 612 51 HET PID M 613 46 HET PID M 614 46 HET CL7 M1151 65 HET DGD M1152 66 HET CL M1161 1 HET CL M1162 1 HET NA M1163 1 HET NA M1164 1 HET PEG M1165 7 HET CL M1166 1 HET CL M1167 1 HET CD M1171 2 HET CD M1172 1 HET CD M1173 1 HET CD M1174 2 HET CD M1175 1 HET CD M1176 1 HETNAM PID PERIDININ HETNAM CL7 CHLOROPHYLL D HETNAM DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CD CADMIUM ION FORMUL 2 PID 4(C39 H50 O7) FORMUL 6 CL7 C54 H70 MG N4 O6 FORMUL 7 DGD C51 H96 O15 FORMUL 8 CL 4(CL 1-) FORMUL 10 NA 2(NA 1+) FORMUL 12 PEG C4 H10 O3 FORMUL 15 CD 6(CD 2+) FORMUL 21 HOH *214(H2 O) HELIX 1 1 ASP M 1 VAL M 21 1 21 HELIX 2 2 ASN M 25 GLN M 30 5 6 HELIX 3 3 GLN M 36 ALA M 54 1 19 HELIX 4 4 ASP M 55 SER M 72 1 18 HELIX 5 5 SER M 81 SER M 98 1 18 HELIX 6 6 PRO M 100 LYS M 113 1 14 HELIX 7 7 LYS M 118 LEU M 126 1 9 HELIX 8 8 ASN M 128 SER M 149 1 22 LINK OE1 GLU M 2 CD A CD M1171 1555 1555 2.49 LINK OE2 GLU M 2 CD B CD M1171 1555 1555 2.03 LINK OE1 GLU M 2 CD B CD M1171 1555 1555 2.00 LINK OD2 ASP M 5 CD A CD M1171 1555 1555 2.36 LINK OD1 ASP M 5 CD CD M1172 1555 1555 2.43 LINK OD2 ASP M 5 CD CD M1172 1555 1555 2.51 LINK OD2 ASP M 22 CD CD M1172 8545 1555 2.24 LINK OE1 GLU M 39 CD CD M1175 1555 1555 2.29 LINK OE2 GLU M 39 CD CD M1176 1555 1555 2.13 LINK OD1 ASP M 55 NA NA M1163 1555 1555 2.60 LINK OD2 ASP M 55 NA NA M1163 1555 1555 2.34 LINK NZ LYS M 68 NA NA M1164 1555 1555 1.92 LINK OD2 ASP M 84 NA NA M1164 1555 1555 2.37 LINK OD1 ASP M 84 NA NA M1164 1555 1555 3.15 LINK OD2 ASP M 106 CD CD M1173 1555 1555 2.34 LINK OD1 ASP M 106 CD CD M1173 1555 1555 2.39 LINK OD2 ASP M 109 CD B CD M1174 3455 1555 2.57 LINK OD1 ASP M 109 CD B CD M1174 3455 1555 2.42 LINK OD2 ASP M 109 CD A CD M1174 3455 1555 2.25 LINK OD2 ASP M 116 CD B CD M1174 1555 1555 2.36 LINK OD1 ASP M 116 CD B CD M1174 1555 1555 2.42 LINK OD2 ASP M 116 CD A CD M1174 1555 1555 2.34 LINK MG CL7 M1151 O HOH M2116 1555 1555 2.24 LINK CL CL M1161 CD CD M1172 1555 1555 2.46 LINK CL CL M1162 CD CD M1175 1555 1555 2.42 LINK NA NA M1163 CL CL M1166 1555 1555 1.80 LINK NA NA M1163 O HOH M2102 1555 1555 1.94 LINK NA NA M1163 O HOH M2103 1555 1555 2.33 LINK NA NA M1164 O HOH M2127 1555 1555 2.66 LINK CD A CD M1171 O HOH M2011 1555 1555 2.56 LINK CD B CD M1171 O HOH M2011 1555 1555 2.07 LINK CD B CD M1171 O HOH M2013 1555 1555 2.20 LINK CD A CD M1171 O HOH M2021 1555 1555 1.83 LINK CD A CD M1171 O HOH M2028 1555 1555 2.21 LINK CD B CD M1171 O HOH M2046 1555 8545 2.58 LINK CD A CD M1171 O HOH M2046 1555 8545 2.44 LINK CD CD M1172 O HOH M2007 1555 1555 2.37 LINK CD CD M1172 O HOH M2047 1555 8545 2.44 LINK CD CD M1173 O HOH M2093 1555 1555 2.45 LINK CD A CD M1174 O HOH M2154 1555 3455 2.44 LINK CD B CD M1174 O HOH M2156 1555 3455 2.24 LINK CD CD M1175 O HOH M2080 1555 1555 1.93 LINK CD CD M1175 O HOH M2160 1555 3455 2.25 LINK CD CD M1176 O HOH M2085 1555 3455 2.23 SITE 1 AC1 14 PHE M 17 ILE M 48 ALA M 62 ALA M 63 SITE 2 AC1 14 HIS M 66 LEU M 92 ALA M 132 PHE M 139 SITE 3 AC1 14 PID M 611 PID M 612 PID M 613 PID M 614 SITE 4 AC1 14 DGD M1152 HOH M2116 SITE 1 AC2 19 PHE M 17 TRP M 23 PHE M 28 LEU M 29 SITE 2 AC2 19 LEU M 35 PRO M 37 ALA M 40 PRO M 120 SITE 3 AC2 19 ALA M 121 MET M 123 LYS M 124 ALA M 132 SITE 4 AC2 19 TYR M 136 CL7 M1151 DGD M1152 HOH M2202 SITE 5 AC2 19 HOH M2203 HOH M2204 HOH M2205 SITE 1 AC3 12 ILE M 27 PHE M 28 GLN M 30 ALA M 31 SITE 2 AC3 12 ILE M 44 MET M 47 VAL M 119 TYR M 122 SITE 3 AC3 12 MET M 123 PID M 613 CL7 M1151 DGD M1152 SITE 1 AC4 14 MET M 47 LEU M 59 VAL M 104 VAL M 107 SITE 2 AC4 14 TYR M 108 LYS M 118 ALA M 121 LEU M 140 SITE 3 AC4 14 PID M 612 PID M 614 CL7 M1151 DGD M1152 SITE 4 AC4 14 HOH M2184 HOH M2213 SITE 1 AC5 21 TRP M 23 LEU M 41 ALA M 69 ILE M 70 SITE 2 AC5 21 GLY M 78 VAL M 79 THR M 80 TRP M 85 SITE 3 AC5 21 VAL M 88 ASN M 89 LEU M 92 GLU M 101 SITE 4 AC5 21 PHE M 139 LYS M 143 VAL M 146 PID M 613 SITE 5 AC5 21 CL7 M1151 HOH M2053 HOH M2206 HOH M2207 SITE 6 AC5 21 HOH M2208 SITE 1 AC6 20 MET M 47 TYR M 108 VAL M 111 SER M 112 SITE 2 AC6 20 PRO M 120 GLU M 133 TYR M 136 GLU M 137 SITE 3 AC6 20 LEU M 140 PID M 611 PID M 612 PID M 613 SITE 4 AC6 20 CL7 M1151 HOH M2166 HOH M2184 HOH M2203 SITE 5 AC6 20 HOH M2209 HOH M2211 HOH M2212 HOH M2213 SITE 1 AC7 7 GLU M 2 ASP M 5 HOH M2011 HOH M2013 SITE 2 AC7 7 HOH M2021 HOH M2028 HOH M2046 SITE 1 AC8 5 ASP M 5 ASP M 22 CL M1161 HOH M2007 SITE 2 AC8 5 HOH M2047 SITE 1 AC9 4 ASN M 102 ASP M 106 HOH M2093 HOH M2148 SITE 1 BC1 6 MET M 105 ASP M 109 ASP M 116 CL M1167 SITE 2 BC1 6 HOH M2154 HOH M2156 SITE 1 BC2 4 GLU M 39 CL M1162 HOH M2080 HOH M2160 SITE 1 BC3 3 GLU M 39 HOH M2080 HOH M2085 SITE 1 BC4 4 ALA M 0 ASP M 22 ASN M 25 CD M1172 SITE 1 BC5 5 GLN M 36 PRO M 37 LEU M 38 GLU M 39 SITE 2 BC5 5 CD M1175 SITE 1 BC6 3 ASP M 55 NA M1163 HOH M2103 SITE 1 BC7 3 MET M 105 ASP M 116 CD M1174 SITE 1 BC8 4 ASP M 55 CL M1166 HOH M2102 HOH M2103 SITE 1 BC9 3 LYS M 68 ASP M 84 HOH M2127 SITE 1 CC1 5 ALA M 0 ASP M 1 GLU M 20 ARG M 94 SITE 2 CC1 5 HOH M2214 CRYST1 68.580 81.990 75.240 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014582 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013291 0.00000