data_2X29 # _entry.id 2X29 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2X29 PDBE EBI-42339 WWPDB D_1290042339 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2010-03-23 _pdbx_database_PDB_obs_spr.pdb_id 2X29 _pdbx_database_PDB_obs_spr.replace_pdb_id 2WAK _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2X29 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-01-12 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Won, E.Y.' 1 'Cho, H.S.' 2 # _citation.id primary _citation.title 'The Structure of the Trimer of Human 4-1Bb Ligand is Unique Among Members of the Tumor Necrosis Factor Superfamily.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 9202 _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20032458 _citation.pdbx_database_id_DOI 10.1074/JBC.M109.084442 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Won, E.Y.' 1 primary 'Cha, K.' 2 primary 'Byun, J.S.' 3 primary 'Kim, D.U.' 4 primary 'Shin, S.' 5 primary 'Ahn, B.' 6 primary 'Kim, Y.H.' 7 primary 'Rice, A.J.' 8 primary 'Walz, T.' 9 primary 'Kwon, B.S.' 10 primary 'Cho, H.S.' 11 # _cell.entry_id 2X29 _cell.length_a 121.846 _cell.length_b 121.846 _cell.length_c 33.575 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X29 _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 9' 17818.932 1 ? YES 'RESIDUES 80-246' ? 2 water nat water 18.015 71 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '4-1BB LIGAND, 4-1BBL' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;DPAGLLDLRQG(MSE)FAQLVAQNVLLIDGPLSWYSDPGLAGVSLTGGLSYKEDTKELVVAKAGVYYVFFQ(MSE)ELRR VVAGEGSGSVSLALHL(MSE)PLRSAAGAAALALTVDLPPASSEARNSAFGFQGRLLHLSAGQRLGVHLHTEARARHAWQ LTQGATVLGLFRVTPEIPA ; _entity_poly.pdbx_seq_one_letter_code_can ;DPAGLLDLRQGMFAQLVAQNVLLIDGPLSWYSDPGLAGVSLTGGLSYKEDTKELVVAKAGVYYVFFQMELRRVVAGEGSG SVSLALHLMPLRSAAGAAALALTVDLPPASSEARNSAFGFQGRLLHLSAGQRLGVHLHTEARARHAWQLTQGATVLGLFR VTPEIPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 PRO n 1 3 ALA n 1 4 GLY n 1 5 LEU n 1 6 LEU n 1 7 ASP n 1 8 LEU n 1 9 ARG n 1 10 GLN n 1 11 GLY n 1 12 MSE n 1 13 PHE n 1 14 ALA n 1 15 GLN n 1 16 LEU n 1 17 VAL n 1 18 ALA n 1 19 GLN n 1 20 ASN n 1 21 VAL n 1 22 LEU n 1 23 LEU n 1 24 ILE n 1 25 ASP n 1 26 GLY n 1 27 PRO n 1 28 LEU n 1 29 SER n 1 30 TRP n 1 31 TYR n 1 32 SER n 1 33 ASP n 1 34 PRO n 1 35 GLY n 1 36 LEU n 1 37 ALA n 1 38 GLY n 1 39 VAL n 1 40 SER n 1 41 LEU n 1 42 THR n 1 43 GLY n 1 44 GLY n 1 45 LEU n 1 46 SER n 1 47 TYR n 1 48 LYS n 1 49 GLU n 1 50 ASP n 1 51 THR n 1 52 LYS n 1 53 GLU n 1 54 LEU n 1 55 VAL n 1 56 VAL n 1 57 ALA n 1 58 LYS n 1 59 ALA n 1 60 GLY n 1 61 VAL n 1 62 TYR n 1 63 TYR n 1 64 VAL n 1 65 PHE n 1 66 PHE n 1 67 GLN n 1 68 MSE n 1 69 GLU n 1 70 LEU n 1 71 ARG n 1 72 ARG n 1 73 VAL n 1 74 VAL n 1 75 ALA n 1 76 GLY n 1 77 GLU n 1 78 GLY n 1 79 SER n 1 80 GLY n 1 81 SER n 1 82 VAL n 1 83 SER n 1 84 LEU n 1 85 ALA n 1 86 LEU n 1 87 HIS n 1 88 LEU n 1 89 MSE n 1 90 PRO n 1 91 LEU n 1 92 ARG n 1 93 SER n 1 94 ALA n 1 95 ALA n 1 96 GLY n 1 97 ALA n 1 98 ALA n 1 99 ALA n 1 100 LEU n 1 101 ALA n 1 102 LEU n 1 103 THR n 1 104 VAL n 1 105 ASP n 1 106 LEU n 1 107 PRO n 1 108 PRO n 1 109 ALA n 1 110 SER n 1 111 SER n 1 112 GLU n 1 113 ALA n 1 114 ARG n 1 115 ASN n 1 116 SER n 1 117 ALA n 1 118 PHE n 1 119 GLY n 1 120 PHE n 1 121 GLN n 1 122 GLY n 1 123 ARG n 1 124 LEU n 1 125 LEU n 1 126 HIS n 1 127 LEU n 1 128 SER n 1 129 ALA n 1 130 GLY n 1 131 GLN n 1 132 ARG n 1 133 LEU n 1 134 GLY n 1 135 VAL n 1 136 HIS n 1 137 LEU n 1 138 HIS n 1 139 THR n 1 140 GLU n 1 141 ALA n 1 142 ARG n 1 143 ALA n 1 144 ARG n 1 145 HIS n 1 146 ALA n 1 147 TRP n 1 148 GLN n 1 149 LEU n 1 150 THR n 1 151 GLN n 1 152 GLY n 1 153 ALA n 1 154 THR n 1 155 VAL n 1 156 LEU n 1 157 GLY n 1 158 LEU n 1 159 PHE n 1 160 ARG n 1 161 VAL n 1 162 THR n 1 163 PRO n 1 164 GLU n 1 165 ILE n 1 166 PRO n 1 167 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-6P-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TNFL9_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P41273 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2X29 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 167 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P41273 _struct_ref_seq.db_align_beg 80 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 246 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 80 _struct_ref_seq.pdbx_auth_seq_align_end 246 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2X29 MSE A 68 ? UNP P41273 LEU 147 'engineered mutation' 147 1 1 2X29 MSE A 89 ? UNP P41273 GLN 168 'engineered mutation' 168 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2X29 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.03 _exptl_crystal.density_percent_sol 69.53 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M SODIUM CHLORIDE, 0.1M BIS-TRIS PH6.5, 1.5M AMMONIUM SULFATE' # _diffrn.id 1 _diffrn.ambient_temp 97 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2007-05-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A _diffrn_source.pdbx_wavelength 0.9797 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2X29 _reflns.observed_criterion_sigma_I 32.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.30 _reflns.number_obs 13136 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 100 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 50.00 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.08 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 32.00 _reflns_shell.pdbx_redundancy 18.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2X29 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12250 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.88 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.85 _refine.ls_R_factor_obs 0.21976 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21896 _refine.ls_R_factor_R_free 0.23456 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 637 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.914 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.B_iso_mean 24.787 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.212 _refine.pdbx_overall_ESU_R_Free 0.175 _refine.overall_SU_ML 0.117 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.639 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1176 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 1247 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 39.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.027 0.022 ? 1200 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.905 1.974 ? 1629 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.317 5.000 ? 153 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.442 22.708 ? 48 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.244 15.000 ? 187 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.788 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.167 0.200 ? 188 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 901 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.272 1.500 ? 768 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.334 2.000 ? 1216 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.318 3.000 ? 432 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.652 4.500 ? 413 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.301 _refine_ls_shell.d_res_low 2.361 _refine_ls_shell.number_reflns_R_work 902 _refine_ls_shell.R_factor_R_work 0.210 _refine_ls_shell.percent_reflns_obs 99.89 _refine_ls_shell.R_factor_R_free 0.216 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2X29 _struct.title 'Crystal structure of human4-1BB ligand ectodomain' _struct.pdbx_descriptor 'TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 9' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2X29 _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'SIGNAL-ANCHOR, CYTOKINE, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 140 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id HIS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 145 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 219 _struct_conf.end_auth_comp_id HIS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 224 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 11 C ? ? ? 1_555 A MSE 12 N ? ? A GLY 90 A MSE 91 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 12 C ? ? ? 1_555 A PHE 13 N ? ? A MSE 91 A PHE 92 1_555 ? ? ? ? ? ? ? 1.305 ? covale3 covale ? ? A GLN 67 C ? ? ? 1_555 A MSE 68 N ? ? A GLN 146 A MSE 147 1_555 ? ? ? ? ? ? ? 1.315 ? covale4 covale ? ? A MSE 68 C ? ? ? 1_555 A GLU 69 N ? ? A MSE 147 A GLU 148 1_555 ? ? ? ? ? ? ? 1.325 ? covale5 covale ? ? A LEU 88 C ? ? ? 1_555 A MSE 89 N ? ? A LEU 167 A MSE 168 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 89 C ? ? ? 1_555 A PRO 90 N ? ? A MSE 168 A PRO 169 1_555 ? ? ? ? ? ? ? 1.347 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MSE _struct_mon_prot_cis.label_seq_id 89 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MSE _struct_mon_prot_cis.auth_seq_id 168 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 90 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 169 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.87 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 4 ? AC ? 5 ? AD ? 5 ? AE ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? anti-parallel AB 3 4 ? parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AC 4 5 ? parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AD 3 4 ? anti-parallel AD 4 5 ? anti-parallel AE 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 4 ? LEU A 6 ? GLY A 83 LEU A 85 AA 2 LEU A 54 ? VAL A 56 ? LEU A 133 VAL A 135 AA 3 GLN A 131 ? HIS A 138 ? GLN A 210 HIS A 217 AA 4 GLY A 80 ? MSE A 89 ? GLY A 159 MSE A 168 AA 5 LEU A 100 ? LEU A 106 ? LEU A 179 LEU A 185 AB 1 GLY A 4 ? LEU A 6 ? GLY A 83 LEU A 85 AB 2 LEU A 54 ? VAL A 56 ? LEU A 133 VAL A 135 AB 3 GLN A 131 ? HIS A 138 ? GLN A 210 HIS A 217 AB 4 GLY A 26 ? PRO A 27 ? GLY A 105 PRO A 106 AC 1 TRP A 30 ? TYR A 31 ? TRP A 109 TYR A 110 AC 2 PHE A 13 ? ALA A 18 ? PHE A 92 ALA A 97 AC 3 VAL A 155 ? ARG A 160 ? VAL A 234 ARG A 239 AC 4 GLY A 60 ? ARG A 72 ? GLY A 139 ARG A 151 AC 5 TRP A 147 ? LEU A 149 ? TRP A 226 LEU A 228 AD 1 TRP A 30 ? TYR A 31 ? TRP A 109 TYR A 110 AD 2 PHE A 13 ? ALA A 18 ? PHE A 92 ALA A 97 AD 3 VAL A 155 ? ARG A 160 ? VAL A 234 ARG A 239 AD 4 GLY A 60 ? ARG A 72 ? GLY A 139 ARG A 151 AD 5 SER A 116 ? LEU A 127 ? SER A 195 LEU A 206 AE 1 TRP A 147 ? LEU A 149 ? TRP A 226 LEU A 228 AE 2 GLY A 60 ? ARG A 72 ? GLY A 139 ARG A 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 6 ? N LEU A 85 O VAL A 55 ? O VAL A 134 AA 2 3 N VAL A 56 ? N VAL A 135 O GLN A 131 ? O GLN A 210 AA 3 4 N HIS A 138 ? N HIS A 217 O SER A 83 ? O SER A 162 AA 4 5 N LEU A 86 ? N LEU A 165 O LEU A 100 ? O LEU A 179 AB 1 2 N LEU A 6 ? N LEU A 85 O VAL A 55 ? O VAL A 134 AB 2 3 N VAL A 56 ? N VAL A 135 O GLN A 131 ? O GLN A 210 AB 3 4 N LEU A 137 ? N LEU A 216 O GLY A 26 ? O GLY A 105 AC 1 2 N TYR A 31 ? N TYR A 110 O VAL A 17 ? O VAL A 96 AC 2 3 N LEU A 16 ? N LEU A 95 O LEU A 156 ? O LEU A 235 AC 3 4 N PHE A 159 ? N PHE A 238 O TYR A 63 ? O TYR A 142 AC 4 5 N ARG A 71 ? N ARG A 150 O GLN A 148 ? O GLN A 227 AD 1 2 N TYR A 31 ? N TYR A 110 O VAL A 17 ? O VAL A 96 AD 2 3 N LEU A 16 ? N LEU A 95 O LEU A 156 ? O LEU A 235 AD 3 4 N PHE A 159 ? N PHE A 238 O TYR A 63 ? O TYR A 142 AD 4 5 N LEU A 70 ? N LEU A 149 O ALA A 117 ? O ALA A 196 AE 1 2 N GLN A 148 ? N GLN A 227 O ARG A 71 ? O ARG A 150 # _database_PDB_matrix.entry_id 2X29 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2X29 _atom_sites.fract_transf_matrix[1][1] 0.008207 _atom_sites.fract_transf_matrix[1][2] 0.004738 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009477 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029784 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 80 80 ASP ASP A . n A 1 2 PRO 2 81 81 PRO PRO A . n A 1 3 ALA 3 82 82 ALA ALA A . n A 1 4 GLY 4 83 83 GLY GLY A . n A 1 5 LEU 5 84 84 LEU LEU A . n A 1 6 LEU 6 85 85 LEU LEU A . n A 1 7 ASP 7 86 86 ASP ASP A . n A 1 8 LEU 8 87 87 LEU LEU A . n A 1 9 ARG 9 88 88 ARG ARG A . n A 1 10 GLN 10 89 89 GLN GLN A . n A 1 11 GLY 11 90 90 GLY GLY A . n A 1 12 MSE 12 91 91 MSE MSE A . n A 1 13 PHE 13 92 92 PHE PHE A . n A 1 14 ALA 14 93 93 ALA ALA A . n A 1 15 GLN 15 94 94 GLN GLN A . n A 1 16 LEU 16 95 95 LEU LEU A . n A 1 17 VAL 17 96 96 VAL VAL A . n A 1 18 ALA 18 97 97 ALA ALA A . n A 1 19 GLN 19 98 98 GLN GLN A . n A 1 20 ASN 20 99 99 ASN ASN A . n A 1 21 VAL 21 100 100 VAL VAL A . n A 1 22 LEU 22 101 101 LEU LEU A . n A 1 23 LEU 23 102 102 LEU LEU A . n A 1 24 ILE 24 103 103 ILE ILE A . n A 1 25 ASP 25 104 104 ASP ASP A . n A 1 26 GLY 26 105 105 GLY GLY A . n A 1 27 PRO 27 106 106 PRO PRO A . n A 1 28 LEU 28 107 107 LEU LEU A . n A 1 29 SER 29 108 108 SER SER A . n A 1 30 TRP 30 109 109 TRP TRP A . n A 1 31 TYR 31 110 110 TYR TYR A . n A 1 32 SER 32 111 111 SER SER A . n A 1 33 ASP 33 112 112 ASP ASP A . n A 1 34 PRO 34 113 113 PRO PRO A . n A 1 35 GLY 35 114 114 GLY GLY A . n A 1 36 LEU 36 115 115 LEU LEU A . n A 1 37 ALA 37 116 116 ALA ALA A . n A 1 38 GLY 38 117 117 GLY GLY A . n A 1 39 VAL 39 118 118 VAL VAL A . n A 1 40 SER 40 119 119 SER SER A . n A 1 41 LEU 41 120 120 LEU LEU A . n A 1 42 THR 42 121 121 THR THR A . n A 1 43 GLY 43 122 122 GLY GLY A . n A 1 44 GLY 44 123 123 GLY GLY A . n A 1 45 LEU 45 124 124 LEU LEU A . n A 1 46 SER 46 125 125 SER SER A . n A 1 47 TYR 47 126 126 TYR TYR A . n A 1 48 LYS 48 127 127 LYS LYS A . n A 1 49 GLU 49 128 128 GLU GLU A . n A 1 50 ASP 50 129 129 ASP ASP A . n A 1 51 THR 51 130 130 THR THR A . n A 1 52 LYS 52 131 131 LYS LYS A . n A 1 53 GLU 53 132 132 GLU GLU A . n A 1 54 LEU 54 133 133 LEU LEU A . n A 1 55 VAL 55 134 134 VAL VAL A . n A 1 56 VAL 56 135 135 VAL VAL A . n A 1 57 ALA 57 136 136 ALA ALA A . n A 1 58 LYS 58 137 137 LYS LYS A . n A 1 59 ALA 59 138 138 ALA ALA A . n A 1 60 GLY 60 139 139 GLY GLY A . n A 1 61 VAL 61 140 140 VAL VAL A . n A 1 62 TYR 62 141 141 TYR TYR A . n A 1 63 TYR 63 142 142 TYR TYR A . n A 1 64 VAL 64 143 143 VAL VAL A . n A 1 65 PHE 65 144 144 PHE PHE A . n A 1 66 PHE 66 145 145 PHE PHE A . n A 1 67 GLN 67 146 146 GLN GLN A . n A 1 68 MSE 68 147 147 MSE MSE A . n A 1 69 GLU 69 148 148 GLU GLU A . n A 1 70 LEU 70 149 149 LEU LEU A . n A 1 71 ARG 71 150 150 ARG ARG A . n A 1 72 ARG 72 151 151 ARG ARG A . n A 1 73 VAL 73 152 152 VAL VAL A . n A 1 74 VAL 74 153 153 VAL VAL A . n A 1 75 ALA 75 154 154 ALA ALA A . n A 1 76 GLY 76 155 155 GLY GLY A . n A 1 77 GLU 77 156 156 GLU GLU A . n A 1 78 GLY 78 157 157 GLY GLY A . n A 1 79 SER 79 158 158 SER SER A . n A 1 80 GLY 80 159 159 GLY GLY A . n A 1 81 SER 81 160 160 SER SER A . n A 1 82 VAL 82 161 161 VAL VAL A . n A 1 83 SER 83 162 162 SER SER A . n A 1 84 LEU 84 163 163 LEU LEU A . n A 1 85 ALA 85 164 164 ALA ALA A . n A 1 86 LEU 86 165 165 LEU LEU A . n A 1 87 HIS 87 166 166 HIS HIS A . n A 1 88 LEU 88 167 167 LEU LEU A . n A 1 89 MSE 89 168 168 MSE MSE A . n A 1 90 PRO 90 169 169 PRO PRO A . n A 1 91 LEU 91 170 ? ? ? A . n A 1 92 ARG 92 171 ? ? ? A . n A 1 93 SER 93 172 ? ? ? A . n A 1 94 ALA 94 173 ? ? ? A . n A 1 95 ALA 95 174 ? ? ? A . n A 1 96 GLY 96 175 ? ? ? A . n A 1 97 ALA 97 176 176 ALA ALA A . n A 1 98 ALA 98 177 177 ALA ALA A . n A 1 99 ALA 99 178 178 ALA ALA A . n A 1 100 LEU 100 179 179 LEU LEU A . n A 1 101 ALA 101 180 180 ALA ALA A . n A 1 102 LEU 102 181 181 LEU LEU A . n A 1 103 THR 103 182 182 THR THR A . n A 1 104 VAL 104 183 183 VAL VAL A . n A 1 105 ASP 105 184 184 ASP ASP A . n A 1 106 LEU 106 185 185 LEU LEU A . n A 1 107 PRO 107 186 186 PRO PRO A . n A 1 108 PRO 108 187 187 PRO PRO A . n A 1 109 ALA 109 188 ? ? ? A . n A 1 110 SER 110 189 ? ? ? A . n A 1 111 SER 111 190 ? ? ? A . n A 1 112 GLU 112 191 ? ? ? A . n A 1 113 ALA 113 192 ? ? ? A . n A 1 114 ARG 114 193 193 ARG ARG A . n A 1 115 ASN 115 194 194 ASN ASN A . n A 1 116 SER 116 195 195 SER SER A . n A 1 117 ALA 117 196 196 ALA ALA A . n A 1 118 PHE 118 197 197 PHE PHE A . n A 1 119 GLY 119 198 198 GLY GLY A . n A 1 120 PHE 120 199 199 PHE PHE A . n A 1 121 GLN 121 200 200 GLN GLN A . n A 1 122 GLY 122 201 201 GLY GLY A . n A 1 123 ARG 123 202 202 ARG ARG A . n A 1 124 LEU 124 203 203 LEU LEU A . n A 1 125 LEU 125 204 204 LEU LEU A . n A 1 126 HIS 126 205 205 HIS HIS A . n A 1 127 LEU 127 206 206 LEU LEU A . n A 1 128 SER 128 207 207 SER SER A . n A 1 129 ALA 129 208 208 ALA ALA A . n A 1 130 GLY 130 209 209 GLY GLY A . n A 1 131 GLN 131 210 210 GLN GLN A . n A 1 132 ARG 132 211 211 ARG ARG A . n A 1 133 LEU 133 212 212 LEU LEU A . n A 1 134 GLY 134 213 213 GLY GLY A . n A 1 135 VAL 135 214 214 VAL VAL A . n A 1 136 HIS 136 215 215 HIS HIS A . n A 1 137 LEU 137 216 216 LEU LEU A . n A 1 138 HIS 138 217 217 HIS HIS A . n A 1 139 THR 139 218 218 THR THR A . n A 1 140 GLU 140 219 219 GLU GLU A . n A 1 141 ALA 141 220 220 ALA ALA A . n A 1 142 ARG 142 221 221 ARG ARG A . n A 1 143 ALA 143 222 222 ALA ALA A . n A 1 144 ARG 144 223 223 ARG ARG A . n A 1 145 HIS 145 224 224 HIS HIS A . n A 1 146 ALA 146 225 225 ALA ALA A . n A 1 147 TRP 147 226 226 TRP TRP A . n A 1 148 GLN 148 227 227 GLN GLN A . n A 1 149 LEU 149 228 228 LEU LEU A . n A 1 150 THR 150 229 229 THR THR A . n A 1 151 GLN 151 230 230 GLN GLN A . n A 1 152 GLY 152 231 231 GLY GLY A . n A 1 153 ALA 153 232 232 ALA ALA A . n A 1 154 THR 154 233 233 THR THR A . n A 1 155 VAL 155 234 234 VAL VAL A . n A 1 156 LEU 156 235 235 LEU LEU A . n A 1 157 GLY 157 236 236 GLY GLY A . n A 1 158 LEU 158 237 237 LEU LEU A . n A 1 159 PHE 159 238 238 PHE PHE A . n A 1 160 ARG 160 239 239 ARG ARG A . n A 1 161 VAL 161 240 240 VAL VAL A . n A 1 162 THR 162 241 241 THR THR A . n A 1 163 PRO 163 242 242 PRO PRO A . n A 1 164 GLU 164 243 243 GLU GLU A . n A 1 165 ILE 165 244 244 ILE ILE A . n A 1 166 PRO 166 245 245 PRO PRO A . n A 1 167 ALA 167 246 246 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . B 2 HOH 45 2045 2045 HOH HOH A . B 2 HOH 46 2046 2046 HOH HOH A . B 2 HOH 47 2047 2047 HOH HOH A . B 2 HOH 48 2048 2048 HOH HOH A . B 2 HOH 49 2049 2049 HOH HOH A . B 2 HOH 50 2050 2050 HOH HOH A . B 2 HOH 51 2051 2051 HOH HOH A . B 2 HOH 52 2052 2052 HOH HOH A . B 2 HOH 53 2053 2053 HOH HOH A . B 2 HOH 54 2054 2054 HOH HOH A . B 2 HOH 55 2055 2055 HOH HOH A . B 2 HOH 56 2056 2056 HOH HOH A . B 2 HOH 57 2057 2057 HOH HOH A . B 2 HOH 58 2058 2058 HOH HOH A . B 2 HOH 59 2059 2059 HOH HOH A . B 2 HOH 60 2060 2060 HOH HOH A . B 2 HOH 61 2061 2061 HOH HOH A . B 2 HOH 62 2062 2062 HOH HOH A . B 2 HOH 63 2063 2063 HOH HOH A . B 2 HOH 64 2064 2064 HOH HOH A . B 2 HOH 65 2065 2065 HOH HOH A . B 2 HOH 66 2066 2066 HOH HOH A . B 2 HOH 67 2067 2067 HOH HOH A . B 2 HOH 68 2068 2068 HOH HOH A . B 2 HOH 69 2069 2069 HOH HOH A . B 2 HOH 70 2070 2070 HOH HOH A . B 2 HOH 71 2071 2071 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 12 A MSE 91 ? MET SELENOMETHIONINE 2 A MSE 68 A MSE 147 ? MET SELENOMETHIONINE 3 A MSE 89 A MSE 168 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2930 ? 1 MORE -26.41 ? 1 'SSA (A^2)' 21700 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -60.9230000000 -0.8660254038 -0.5000000000 0.0000000000 105.5217313495 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 60.9230000000 0.8660254038 -0.5000000000 0.0000000000 105.5217313495 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-23 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 2X29 _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, LEU 147 TO MET ENGINEERED RESIDUE IN CHAIN A, GLN 168 TO MET ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 211 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 211 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 211 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 115.73 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -4.57 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 121 ? ? -128.95 -166.83 2 1 ALA A 177 ? ? -32.77 125.21 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 170 ? A LEU 91 2 1 Y 1 A ARG 171 ? A ARG 92 3 1 Y 1 A SER 172 ? A SER 93 4 1 Y 1 A ALA 173 ? A ALA 94 5 1 Y 1 A ALA 174 ? A ALA 95 6 1 Y 1 A GLY 175 ? A GLY 96 7 1 Y 1 A ALA 188 ? A ALA 109 8 1 Y 1 A SER 189 ? A SER 110 9 1 Y 1 A SER 190 ? A SER 111 10 1 Y 1 A GLU 191 ? A GLU 112 11 1 Y 1 A ALA 192 ? A ALA 113 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #