HEADER CELL ADHESION 15-JAN-10 2X2S TITLE CRYSTAL STRUCTURE OF SCLEROTINIA SCLEROTIORUM AGGLUTININ SSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AGGLUTININ SSA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCLEROTINIA SCLEROTIORUM; SOURCE 3 ORGANISM_TAXID: 5180 KEYWDS FUNGAL LECTIN, BETA-TREFOIL DOMAIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR G.SULZENBACHER,V.ROIG-ZAMBONI,W.J.PEUMANS,P.ROUGE,E.J.M.VAN DAMME, AUTHOR 2 Y.BOURNE REVDAT 4 01-MAY-24 2X2S 1 REMARK REVDAT 3 21-JUL-10 2X2S 1 JRNL REVDAT 2 07-JUL-10 2X2S 1 JRNL REVDAT 1 26-MAY-10 2X2S 0 JRNL AUTH G.SULZENBACHER,V.ROIG-ZAMBONI,W.J.PEUMANS,P.ROUGE, JRNL AUTH 2 E.J.M.VAN DAMME,Y.BOURNE JRNL TITL CRYSTAL STRUCTURE OF THE GALNAC/GAL-SPECIFIC AGGLUTININ FROM JRNL TITL 2 THE PHYTOPATHOGENIC ASCOMYCETE SCLEROTINIA SCLEROTIORUM JRNL TITL 3 REVEALS NOVEL ADAPTATION OF A BETA-TREFOIL DOMAIN JRNL REF J.MOL.BIOL. V. 400 715 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20566411 JRNL DOI 10.1016/J.JMB.2010.05.038 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 110.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 96905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4061 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5289 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4651 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.535 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5191 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3427 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7144 ; 1.506 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8494 ; 0.897 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 708 ; 7.534 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;36.185 ;25.430 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 846 ;13.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 794 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5928 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 996 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3254 ; 1.611 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1309 ; 0.542 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5305 ; 2.535 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1937 ; 2.013 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1796 ; 3.147 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 43.8260 9.4390 8.4680 REMARK 3 T TENSOR REMARK 3 T11: 0.0495 T22: 0.0116 REMARK 3 T33: 0.0224 T12: 0.0085 REMARK 3 T13: -0.0022 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.2710 L22: 1.4069 REMARK 3 L33: 0.6182 L12: -0.1794 REMARK 3 L13: -0.0357 L23: 0.5037 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: -0.0002 S13: -0.0247 REMARK 3 S21: 0.0214 S22: -0.0123 S23: 0.0230 REMARK 3 S31: 0.0191 S32: -0.0471 S33: -0.0332 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7610 32.0000 25.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: 0.0244 REMARK 3 T33: 0.0194 T12: 0.0141 REMARK 3 T13: 0.0091 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4387 L22: 1.1887 REMARK 3 L33: 0.7725 L12: -0.2830 REMARK 3 L13: 0.0017 L23: 0.4335 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: -0.0250 S13: -0.0005 REMARK 3 S21: 0.0656 S22: 0.0496 S23: -0.0126 REMARK 3 S31: 0.0645 S32: -0.0417 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 153 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1180 15.3270 -25.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.0149 T22: 0.0403 REMARK 3 T33: 0.0126 T12: 0.0058 REMARK 3 T13: 0.0004 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.5035 L22: 1.1119 REMARK 3 L33: 0.7606 L12: -0.3829 REMARK 3 L13: -0.1720 L23: 0.1794 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.0271 S13: 0.0199 REMARK 3 S21: 0.0066 S22: 0.0303 S23: 0.0199 REMARK 3 S31: -0.0067 S32: -0.1573 S33: -0.0018 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 153 REMARK 3 ORIGIN FOR THE GROUP (A): 74.9310 4.9470 0.4270 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.0090 REMARK 3 T33: 0.0024 T12: -0.0183 REMARK 3 T13: -0.0112 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.4351 L22: 1.0712 REMARK 3 L33: 0.9045 L12: -0.1223 REMARK 3 L13: -0.0183 L23: -0.2228 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.0065 S13: -0.0152 REMARK 3 S21: -0.1150 S22: -0.0280 S23: 0.0369 REMARK 3 S31: -0.1129 S32: 0.0824 S33: -0.0103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. B-FACTORS, CONTAINING RESIDUAL AND TLS COMPONENT HAVE REMARK 3 BEEN DEPOSITED REMARK 4 REMARK 4 2X2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 68.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODEL GENERATED BY PHYRE SERVER REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M SODIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.88400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.76800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.32600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.21000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.44200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 105 REMARK 465 GLN A 106 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 THR C 104 REMARK 465 HIS C 105 REMARK 465 GLN C 106 REMARK 465 TYR C 107 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2091 O HOH A 2097 2.00 REMARK 500 O HOH A 2073 O HOH B 2115 2.01 REMARK 500 O HOH D 2050 O HOH D 2109 2.10 REMARK 500 O HOH B 2178 O HOH B 2179 2.12 REMARK 500 O3 GOL C 600 O HOH C 2177 2.13 REMARK 500 O HOH B 2048 O HOH B 2113 2.15 REMARK 500 OE1 GLU B 25 O HOH B 2030 2.17 REMARK 500 O HOH C 2050 O HOH C 2107 2.17 REMARK 500 O HOH A 2004 O HOH B 2075 2.18 REMARK 500 O HOH C 2157 O HOH C 2161 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 151 OE2 GLU B 108 5554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 108 -46.60 -132.35 REMARK 500 GLU A 108 -46.83 -132.02 REMARK 500 GLU B 25 -8.23 76.67 REMARK 500 GLU B 25 -14.78 82.29 REMARK 500 TYR B 107 37.24 -141.88 REMARK 500 GLU C 25 -8.25 80.24 REMARK 500 GLU C 25 -8.28 80.22 REMARK 500 GLU D 25 -14.06 85.17 REMARK 500 TYR D 107 38.75 -140.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: PROVIDED BY DEPOSITOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: PROVIDED BY DEPOSITOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X2T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SCLEROTINIA SCLEROTIORUM AGGLUTININ SSA IN REMARK 900 COMPLEX WITH GAL-BETA1,3 -GALNAC DBREF 2X2S A 1 153 UNP A7XUK7 A7XUK7_SCLSC 1 153 DBREF 2X2S B 1 153 UNP A7XUK7 A7XUK7_SCLSC 1 153 DBREF 2X2S C 1 153 UNP A7XUK7 A7XUK7_SCLSC 1 153 DBREF 2X2S D 1 153 UNP A7XUK7 A7XUK7_SCLSC 1 153 SEQRES 1 A 153 MET GLY PHE LYS GLY VAL GLY THR TYR GLU ILE VAL PRO SEQRES 2 A 153 TYR GLN ALA PRO SER LEU ASN LEU ASN ALA TRP GLU GLY SEQRES 3 A 153 LYS LEU GLU PRO GLY ALA VAL VAL ARG THR TYR THR ARG SEQRES 4 A 153 GLY ASP LYS PRO SER ASP ASN ALA LYS TRP GLN VAL ALA SEQRES 5 A 153 LEU VAL ALA GLY SER GLY ASP SER ALA GLU TYR LEU ILE SEQRES 6 A 153 ILE ASN VAL HIS SER GLY TYR PHE LEU THR ALA THR LYS SEQRES 7 A 153 GLU ASN HIS ILE VAL SER THR PRO GLN ILE SER PRO THR SEQRES 8 A 153 ASP PRO SER ALA ARG TRP THR ILE LYS PRO ALA THR THR SEQRES 9 A 153 HIS GLN TYR GLU VAL PHE THR ILE ASN ASN LYS VAL SER SEQRES 10 A 153 GLU LEU GLY GLN LEU THR VAL LYS ASP TYR SER THR HIS SEQRES 11 A 153 SER GLY ALA ASP VAL LEU SER ALA SER ALA LYS THR ALA SEQRES 12 A 153 ASP ASN GLN LYS TRP TYR PHE ASP ALA LYS SEQRES 1 B 153 MET GLY PHE LYS GLY VAL GLY THR TYR GLU ILE VAL PRO SEQRES 2 B 153 TYR GLN ALA PRO SER LEU ASN LEU ASN ALA TRP GLU GLY SEQRES 3 B 153 LYS LEU GLU PRO GLY ALA VAL VAL ARG THR TYR THR ARG SEQRES 4 B 153 GLY ASP LYS PRO SER ASP ASN ALA LYS TRP GLN VAL ALA SEQRES 5 B 153 LEU VAL ALA GLY SER GLY ASP SER ALA GLU TYR LEU ILE SEQRES 6 B 153 ILE ASN VAL HIS SER GLY TYR PHE LEU THR ALA THR LYS SEQRES 7 B 153 GLU ASN HIS ILE VAL SER THR PRO GLN ILE SER PRO THR SEQRES 8 B 153 ASP PRO SER ALA ARG TRP THR ILE LYS PRO ALA THR THR SEQRES 9 B 153 HIS GLN TYR GLU VAL PHE THR ILE ASN ASN LYS VAL SER SEQRES 10 B 153 GLU LEU GLY GLN LEU THR VAL LYS ASP TYR SER THR HIS SEQRES 11 B 153 SER GLY ALA ASP VAL LEU SER ALA SER ALA LYS THR ALA SEQRES 12 B 153 ASP ASN GLN LYS TRP TYR PHE ASP ALA LYS SEQRES 1 C 153 MET GLY PHE LYS GLY VAL GLY THR TYR GLU ILE VAL PRO SEQRES 2 C 153 TYR GLN ALA PRO SER LEU ASN LEU ASN ALA TRP GLU GLY SEQRES 3 C 153 LYS LEU GLU PRO GLY ALA VAL VAL ARG THR TYR THR ARG SEQRES 4 C 153 GLY ASP LYS PRO SER ASP ASN ALA LYS TRP GLN VAL ALA SEQRES 5 C 153 LEU VAL ALA GLY SER GLY ASP SER ALA GLU TYR LEU ILE SEQRES 6 C 153 ILE ASN VAL HIS SER GLY TYR PHE LEU THR ALA THR LYS SEQRES 7 C 153 GLU ASN HIS ILE VAL SER THR PRO GLN ILE SER PRO THR SEQRES 8 C 153 ASP PRO SER ALA ARG TRP THR ILE LYS PRO ALA THR THR SEQRES 9 C 153 HIS GLN TYR GLU VAL PHE THR ILE ASN ASN LYS VAL SER SEQRES 10 C 153 GLU LEU GLY GLN LEU THR VAL LYS ASP TYR SER THR HIS SEQRES 11 C 153 SER GLY ALA ASP VAL LEU SER ALA SER ALA LYS THR ALA SEQRES 12 C 153 ASP ASN GLN LYS TRP TYR PHE ASP ALA LYS SEQRES 1 D 153 MET GLY PHE LYS GLY VAL GLY THR TYR GLU ILE VAL PRO SEQRES 2 D 153 TYR GLN ALA PRO SER LEU ASN LEU ASN ALA TRP GLU GLY SEQRES 3 D 153 LYS LEU GLU PRO GLY ALA VAL VAL ARG THR TYR THR ARG SEQRES 4 D 153 GLY ASP LYS PRO SER ASP ASN ALA LYS TRP GLN VAL ALA SEQRES 5 D 153 LEU VAL ALA GLY SER GLY ASP SER ALA GLU TYR LEU ILE SEQRES 6 D 153 ILE ASN VAL HIS SER GLY TYR PHE LEU THR ALA THR LYS SEQRES 7 D 153 GLU ASN HIS ILE VAL SER THR PRO GLN ILE SER PRO THR SEQRES 8 D 153 ASP PRO SER ALA ARG TRP THR ILE LYS PRO ALA THR THR SEQRES 9 D 153 HIS GLN TYR GLU VAL PHE THR ILE ASN ASN LYS VAL SER SEQRES 10 D 153 GLU LEU GLY GLN LEU THR VAL LYS ASP TYR SER THR HIS SEQRES 11 D 153 SER GLY ALA ASP VAL LEU SER ALA SER ALA LYS THR ALA SEQRES 12 D 153 ASP ASN GLN LYS TRP TYR PHE ASP ALA LYS HET GOL B 200 6 HET GOL C 600 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *710(H2 O) HELIX 1 1 SER A 44 ALA A 47 5 4 HELIX 2 2 ASP A 92 ALA A 95 5 4 HELIX 3 3 VAL A 116 GLY A 120 5 5 HELIX 4 4 ALA A 143 LYS A 147 5 5 HELIX 5 5 SER B 44 ALA B 47 5 4 HELIX 6 6 ASP B 92 ALA B 95 5 4 HELIX 7 7 VAL B 116 GLY B 120 5 5 HELIX 8 8 ALA B 143 LYS B 147 5 5 HELIX 9 9 SER C 44 ALA C 47 5 4 HELIX 10 10 ASP C 92 ALA C 95 5 4 HELIX 11 11 VAL C 116 GLY C 120 5 5 HELIX 12 12 ALA C 143 LYS C 147 5 5 HELIX 13 13 SER D 44 ALA D 47 5 4 HELIX 14 14 ASP D 92 ALA D 95 5 4 HELIX 15 15 VAL D 116 GLY D 120 5 5 HELIX 16 16 ALA D 143 LYS D 147 5 5 SHEET 1 AA 4 GLU A 62 ASN A 67 0 SHEET 2 AA 4 TRP A 49 ALA A 55 -1 O GLN A 50 N ILE A 66 SHEET 3 AA 4 GLY A 7 PRO A 13 -1 O GLY A 7 N VAL A 51 SHEET 4 AA 4 TRP A 148 LYS A 153 -1 O TYR A 149 N VAL A 12 SHEET 1 AB 4 LEU A 19 ALA A 23 0 SHEET 2 AB 4 ALA A 32 THR A 38 -1 O ARG A 35 N ASN A 22 SHEET 3 AB 4 HIS A 81 THR A 85 -1 O VAL A 83 N VAL A 34 SHEET 4 AB 4 PHE A 73 THR A 77 -1 N THR A 75 O SER A 84 SHEET 1 AC 4 TRP A 97 PRO A 101 0 SHEET 2 AC 4 PHE A 110 ASN A 114 -1 O THR A 111 N LYS A 100 SHEET 3 AC 4 GLN A 121 VAL A 124 -1 N LEU A 122 O ILE A 112 SHEET 4 AC 4 VAL A 135 ALA A 138 -1 O LEU A 136 N THR A 123 SHEET 1 BA 4 GLU B 62 ASN B 67 0 SHEET 2 BA 4 TRP B 49 ALA B 55 -1 O GLN B 50 N ILE B 66 SHEET 3 BA 4 GLY B 7 PRO B 13 -1 O GLY B 7 N VAL B 51 SHEET 4 BA 4 TRP B 148 LYS B 153 -1 O TYR B 149 N VAL B 12 SHEET 1 BB 4 LEU B 19 ALA B 23 0 SHEET 2 BB 4 ALA B 32 THR B 38 -1 O ARG B 35 N ASN B 22 SHEET 3 BB 4 HIS B 81 THR B 85 -1 O VAL B 83 N VAL B 34 SHEET 4 BB 4 PHE B 73 THR B 77 -1 N THR B 75 O SER B 84 SHEET 1 BC 4 TRP B 97 PRO B 101 0 SHEET 2 BC 4 PHE B 110 ASN B 114 -1 O THR B 111 N LYS B 100 SHEET 3 BC 4 GLN B 121 VAL B 124 -1 N LEU B 122 O ILE B 112 SHEET 4 BC 4 VAL B 135 ALA B 138 -1 O LEU B 136 N THR B 123 SHEET 1 CA 4 GLU C 62 ASN C 67 0 SHEET 2 CA 4 TRP C 49 ALA C 55 -1 O GLN C 50 N ILE C 66 SHEET 3 CA 4 GLY C 7 PRO C 13 -1 O GLY C 7 N VAL C 51 SHEET 4 CA 4 TRP C 148 LYS C 153 -1 O TYR C 149 N VAL C 12 SHEET 1 CB 4 LEU C 19 ALA C 23 0 SHEET 2 CB 4 ALA C 32 THR C 38 -1 O ARG C 35 N ASN C 22 SHEET 3 CB 4 HIS C 81 THR C 85 -1 O VAL C 83 N VAL C 34 SHEET 4 CB 4 PHE C 73 THR C 77 -1 N THR C 75 O SER C 84 SHEET 1 CC 4 TRP C 97 PRO C 101 0 SHEET 2 CC 4 PHE C 110 ASN C 114 -1 O THR C 111 N LYS C 100 SHEET 3 CC 4 GLN C 121 VAL C 124 -1 N LEU C 122 O ILE C 112 SHEET 4 CC 4 VAL C 135 ALA C 138 -1 O LEU C 136 N THR C 123 SHEET 1 DA 4 GLU D 62 ASN D 67 0 SHEET 2 DA 4 TRP D 49 ALA D 55 -1 O GLN D 50 N ILE D 66 SHEET 3 DA 4 GLY D 7 PRO D 13 -1 O GLY D 7 N VAL D 51 SHEET 4 DA 4 TRP D 148 LYS D 153 -1 O TYR D 149 N VAL D 12 SHEET 1 DB 4 LEU D 19 ALA D 23 0 SHEET 2 DB 4 ALA D 32 THR D 38 -1 O ARG D 35 N ASN D 22 SHEET 3 DB 4 HIS D 81 THR D 85 -1 O VAL D 83 N VAL D 34 SHEET 4 DB 4 PHE D 73 THR D 77 -1 N THR D 75 O SER D 84 SHEET 1 DC 4 TRP D 97 PRO D 101 0 SHEET 2 DC 4 PHE D 110 ASN D 114 -1 O THR D 111 N LYS D 100 SHEET 3 DC 4 GLN D 121 VAL D 124 -1 N LEU D 122 O ILE D 112 SHEET 4 DC 4 VAL D 135 ALA D 138 -1 O LEU D 136 N THR D 123 SITE 1 AC1 6 ASN B 22 TRP B 24 GLU B 25 TYR B 37 SITE 2 AC1 6 ASN B 46 HOH B2190 SITE 1 AC2 8 ASN C 22 ALA C 23 TRP C 24 GLU C 25 SITE 2 AC2 8 TYR C 37 ASN C 46 HOH C2020 HOH C2177 CRYST1 127.318 127.318 86.652 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007854 0.004535 0.000000 0.00000 SCALE2 0.000000 0.009069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011540 0.00000 MTRIX1 1 0.553130 0.574560 -0.603270 17.69346 1 MTRIX2 1 0.595000 -0.779290 -0.196660 14.12032 1 MTRIX3 1 -0.583120 -0.250170 -0.772910 60.88956 1 MTRIX1 2 0.847570 0.530660 0.003920 0.30995 1 MTRIX2 2 0.530600 -0.847550 0.010670 0.31765 1 MTRIX3 2 0.008990 -0.006970 -0.999940 -17.53764 1 MTRIX1 3 -0.770960 0.189070 0.608170 100.13724 1 MTRIX2 3 -0.081820 -0.976410 0.199830 19.96608 1 MTRIX3 3 0.631600 0.104300 0.768240 -39.42391 1