HEADER CARBOHYDRATE-BINDING PROTEIN 19-JAN-10 2X32 TITLE STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM SACCHAROPHAGUS TITLE 2 DEGRADANS IMPLICATED IN PLANT CELL WALL BREAKDOWN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YCEI-LIKE DOMAIN, RESIDUES 199-371; COMPND 5 SYNONYM: X158; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: OCTAPRENYL PYROPHOSPHATE BOUND TO THE PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPHAGUS DEGRADANS; SOURCE 3 ORGANISM_TAXID: 203122; SOURCE 4 STRAIN: 2-40; SOURCE 5 ATCC: 43961; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PDEST17 KEYWDS CARBOHYDRATE-BINDING PROTEIN, OXIDOREDUCTION, MARINE BACTERIA, KEYWDS 2 POLYISOPRENOID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR F.VINCENT,D.DAL MOLIN,R.M.WEINER,Y.BOURNE,B.HENRISSAT REVDAT 5 20-DEC-23 2X32 1 REMARK SHEET REVDAT 4 07-MAR-18 2X32 1 SOURCE REVDAT 3 13-JUL-11 2X32 1 VERSN REVDAT 2 21-APR-10 2X32 1 JRNL REMARK REVDAT 1 23-MAR-10 2X32 0 JRNL AUTH F.VINCENT,D.DALMOLIN,R.M.WEINER,Y.BOURNE,B.HENRISSAT JRNL TITL STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM JRNL TITL 2 SACCHAROPHAGUS DEGRADANS IMPLICATED IN PLANT CELL WALL JRNL TITL 3 BREAKDOWN JRNL REF FEBS LETT. V. 584 1577 2010 JRNL REFN ISSN 0014-5793 JRNL PMID 20227408 JRNL DOI 10.1016/J.FEBSLET.2010.03.015 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2584 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3559 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 541 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 14.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.841 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2980 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1867 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4105 ; 1.872 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4631 ; 1.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 6.030 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;41.322 ;24.919 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 476 ;11.984 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.917 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3397 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 583 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1839 ; 1.062 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 741 ; 0.331 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3020 ; 1.786 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1141 ; 2.612 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1055 ; 3.770 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2153 13.2823 26.3458 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: 0.0600 REMARK 3 T33: 0.0483 T12: -0.0008 REMARK 3 T13: 0.0073 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.0309 L22: 1.3965 REMARK 3 L33: 1.6697 L12: 1.0151 REMARK 3 L13: 0.3703 L23: -0.7559 REMARK 3 S TENSOR REMARK 3 S11: -0.0275 S12: 0.1895 S13: 0.1116 REMARK 3 S21: 0.0208 S22: -0.0592 S23: 0.0220 REMARK 3 S31: -0.0846 S32: 0.2473 S33: 0.0867 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6311 6.8326 31.3302 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0558 REMARK 3 T33: 0.0387 T12: 0.0038 REMARK 3 T13: 0.0048 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.7977 L22: 0.8060 REMARK 3 L33: 0.3004 L12: -0.0557 REMARK 3 L13: 0.5923 L23: -0.2018 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0109 S13: 0.0147 REMARK 3 S21: -0.0359 S22: -0.0103 S23: -0.0357 REMARK 3 S31: 0.0366 S32: 0.0102 S33: 0.0447 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7515 14.1210 31.8565 REMARK 3 T TENSOR REMARK 3 T11: 0.0419 T22: 0.0258 REMARK 3 T33: 0.0361 T12: 0.0051 REMARK 3 T13: 0.0049 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.0550 L22: 0.5257 REMARK 3 L33: 1.0091 L12: 0.0853 REMARK 3 L13: 0.5208 L23: -0.2737 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.0059 S13: 0.0728 REMARK 3 S21: 0.0270 S22: 0.0586 S23: 0.0159 REMARK 3 S31: -0.0518 S32: 0.0030 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6372 25.9141 11.9509 REMARK 3 T TENSOR REMARK 3 T11: 0.0319 T22: 0.0278 REMARK 3 T33: 0.0374 T12: 0.0060 REMARK 3 T13: -0.0067 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.3083 L22: 1.3017 REMARK 3 L33: 1.7873 L12: -0.5098 REMARK 3 L13: -0.4216 L23: -0.4108 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.1050 S13: 0.0247 REMARK 3 S21: -0.0815 S22: 0.0022 S23: 0.0479 REMARK 3 S31: 0.0877 S32: 0.1599 S33: -0.0016 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0041 24.5446 9.1185 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0184 REMARK 3 T33: 0.0204 T12: 0.0043 REMARK 3 T13: -0.0071 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.5482 L22: 0.7036 REMARK 3 L33: 0.8488 L12: -0.0645 REMARK 3 L13: -0.4501 L23: 0.1219 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: 0.0247 S13: -0.0705 REMARK 3 S21: -0.0438 S22: 0.0592 S23: 0.0166 REMARK 3 S31: 0.0320 S32: 0.0060 S33: 0.0145 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 133 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2849 16.7871 8.2066 REMARK 3 T TENSOR REMARK 3 T11: 0.0631 T22: 0.0418 REMARK 3 T33: 0.0467 T12: 0.0217 REMARK 3 T13: 0.0057 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 3.5943 L22: 2.0192 REMARK 3 L33: 2.0558 L12: -1.9893 REMARK 3 L13: -2.2338 L23: 1.3227 REMARK 3 S TENSOR REMARK 3 S11: -0.2411 S12: -0.1872 S13: -0.1568 REMARK 3 S21: 0.0377 S22: 0.1973 S23: 0.0116 REMARK 3 S31: 0.2296 S32: 0.2204 S33: 0.0438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2X32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2X34 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.68900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.36600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.36600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.68900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B -2 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2004 O HOH B 2006 1.53 REMARK 500 OE2 GLU A 143 O HOH A 2256 2.07 REMARK 500 O HOH A 2022 O HOH A 2083 2.09 REMARK 500 OG SER A 4 O HOH A 2011 2.13 REMARK 500 OE2 GLU B 143 O HOH B 2226 2.14 REMARK 500 ND2 ASN B 151 O HOH B 2237 2.15 REMARK 500 OE2 GLU B 24 O HOH B 2052 2.17 REMARK 500 O HOH B 2037 O HOH B 2076 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2281 O HOH B 2162 3545 1.12 REMARK 500 O HOH A 2086 O HOH B 2037 3645 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 171 CB GLU A 171 CG -0.115 REMARK 500 ASP B 55 CB ASP B 55 CG 0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 19 -137.45 55.23 REMARK 500 LEU A 65 -70.95 -97.01 REMARK 500 LYS B 19 -139.30 60.20 REMARK 500 LEU B 65 -69.62 -95.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2004 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH A2016 DISTANCE = 8.55 ANGSTROMS REMARK 525 HOH A2026 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A2027 DISTANCE = 8.30 ANGSTROMS REMARK 525 HOH A2032 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH A2034 DISTANCE = 9.10 ANGSTROMS REMARK 525 HOH A2035 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A2076 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B2030 DISTANCE = 6.31 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OTP A 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OTP B 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 1175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 1175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 1176 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X34 RELATED DB: PDB REMARK 900 STRUCTURE OF A POLYISOPRENOID BINDING DOMAIN FROM SACCHAROPHAGUS REMARK 900 DEGRADANS IMPLICATED IN PLANT CELL WALL BREAKDOWN REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL HISTIDINE TAG DBREF 2X32 A -5 0 PDB 2X32 2X32 -5 0 DBREF 2X32 A 1 173 UNP Q21LI5 Q21LI5_SACD2 199 371 DBREF 2X32 B -5 0 PDB 2X32 2X32 -5 0 DBREF 2X32 B 1 173 UNP Q21LI5 Q21LI5_SACD2 199 371 SEQRES 1 A 179 HIS HIS HIS HIS HIS HIS LEU ALA TYR SER LEU ASP ALA SEQRES 2 A 179 THR ALA SER PHE LEU ASN PHE VAL SER SER LYS LYS THR SEQRES 3 A 179 HIS VAL LEU GLU THR HIS ARG PHE ASP VAL LEU SER GLY SEQRES 4 A 179 GLY ILE SER THR ALA GLY GLU ALA GLN LEU VAL ILE ASP SEQRES 5 A 179 LEU ASN SER VAL ASN THR GLY ILE ASP VAL ARG ASN GLY SEQRES 6 A 179 ARG MET ARG ASP TYR LEU PHE GLU THR ALA THR TYR SER SEQRES 7 A 179 VAL ALA THR VAL THR VAL PRO VAL ASP LEU ALA ALA VAL SEQRES 8 A 179 ALA GLY LEU ALA VAL GLY GLU ASP MET LEU VAL ASP VAL SEQRES 9 A 179 SER ALA THR LEU ASP LEU HIS GLY VAL PRO GLY VAL ILE SEQRES 10 A 179 ASP THR GLN LEU ASN VAL GLN ARG LEU SER ALA THR ARG SEQRES 11 A 179 ILE MET VAL GLN ASN GLN SER PRO LEU LEU ILE LYS ALA SEQRES 12 A 179 ALA ASP TYR SER LEU GLU ALA GLY ILE GLU THR LEU ARG SEQRES 13 A 179 ASN LEU ALA SER LEU ASN VAL ILE SER THR THR VAL PRO SEQRES 14 A 179 VAL ASP PHE VAL LEU PHE TYR GLU ALA PRO SEQRES 1 B 179 HIS HIS HIS HIS HIS HIS LEU ALA TYR SER LEU ASP ALA SEQRES 2 B 179 THR ALA SER PHE LEU ASN PHE VAL SER SER LYS LYS THR SEQRES 3 B 179 HIS VAL LEU GLU THR HIS ARG PHE ASP VAL LEU SER GLY SEQRES 4 B 179 GLY ILE SER THR ALA GLY GLU ALA GLN LEU VAL ILE ASP SEQRES 5 B 179 LEU ASN SER VAL ASN THR GLY ILE ASP VAL ARG ASN GLY SEQRES 6 B 179 ARG MET ARG ASP TYR LEU PHE GLU THR ALA THR TYR SER SEQRES 7 B 179 VAL ALA THR VAL THR VAL PRO VAL ASP LEU ALA ALA VAL SEQRES 8 B 179 ALA GLY LEU ALA VAL GLY GLU ASP MET LEU VAL ASP VAL SEQRES 9 B 179 SER ALA THR LEU ASP LEU HIS GLY VAL PRO GLY VAL ILE SEQRES 10 B 179 ASP THR GLN LEU ASN VAL GLN ARG LEU SER ALA THR ARG SEQRES 11 B 179 ILE MET VAL GLN ASN GLN SER PRO LEU LEU ILE LYS ALA SEQRES 12 B 179 ALA ASP TYR SER LEU GLU ALA GLY ILE GLU THR LEU ARG SEQRES 13 B 179 ASN LEU ALA SER LEU ASN VAL ILE SER THR THR VAL PRO SEQRES 14 B 179 VAL ASP PHE VAL LEU PHE TYR GLU ALA PRO HET OTP A1174 49 HET IMD A1175 5 HET OTP B1174 49 HET IMD B1175 5 HET IMD B1176 5 HETNAM OTP (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31- HETNAM 2 OTP OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL HETNAM 3 OTP TRIHYDROGEN DIPHOSPHATE HETNAM IMD IMIDAZOLE HETSYN OTP OCTAPRENYL PYROPHOSPHATE FORMUL 3 OTP 2(C40 H68 O7 P2) FORMUL 4 IMD 3(C3 H5 N2 1+) FORMUL 8 HOH *541(H2 O) HELIX 1 1 ILE A 54 LEU A 65 1 12 HELIX 2 2 ASP A 81 GLY A 87 1 7 HELIX 3 3 ALA A 138 SER A 141 5 4 HELIX 4 4 LEU A 142 ALA A 153 1 12 HELIX 5 5 ALA B 7 SER B 10 5 4 HELIX 6 6 ILE B 54 LEU B 65 1 12 HELIX 7 7 ASP B 81 GLY B 87 1 7 HELIX 8 8 ALA B 138 SER B 141 5 4 HELIX 9 9 LEU B 142 SER B 154 1 13 SHEET 1 AA12 VAL A 50 ASN A 51 0 SHEET 2 AA12 VAL A 22 PHE A 28 1 O ARG A 27 N ASN A 51 SHEET 3 AA12 PHE A 11 LYS A 18 -1 O LEU A 12 N PHE A 28 SHEET 4 AA12 THR A 161 GLU A 171 -1 O PRO A 163 N VAL A 15 SHEET 5 AA12 LEU A 1 LEU A 5 -1 O SER A 4 N GLU A 171 SHEET 6 AA12 LEU A 31 SER A 36 -1 O GLY A 33 N LEU A 5 SHEET 7 AA12 GLU A 40 ASP A 46 -1 O GLU A 40 N SER A 36 SHEET 8 AA12 VAL A 73 PRO A 79 -1 O ALA A 74 N ILE A 45 SHEET 9 AA12 ASP A 93 ASP A 103 -1 O THR A 101 N THR A 77 SHEET 10 AA12 GLY A 109 ARG A 119 -1 O GLY A 109 N LEU A 102 SHEET 11 AA12 ARG A 124 ASN A 129 -1 O MET A 126 N GLN A 118 SHEET 12 AA12 THR A 161 GLU A 171 -1 O PHE A 166 N ASN A 129 SHEET 1 AB 2 VAL A 50 ASN A 51 0 SHEET 2 AB 2 THR A 161 GLU A 171 -1 O PRO A 163 N VAL A 15 SHEET 1 BA12 VAL B 50 ASN B 51 0 SHEET 2 BA12 VAL B 22 PHE B 28 -1 O ARG B 27 N ASN B 51 SHEET 3 BA12 PHE B 11 LYS B 18 1 O LEU B 12 N PHE B 28 SHEET 4 BA12 THR B 161 GLU B 171 1 O PRO B 163 N VAL B 15 SHEET 5 BA12 LEU B 1 LEU B 5 -1 O SER B 4 N GLU B 171 SHEET 6 BA12 LEU B 31 SER B 36 -1 O GLY B 33 N LEU B 5 SHEET 7 BA12 GLU B 40 ASP B 46 -1 O GLU B 40 N SER B 36 SHEET 8 BA12 VAL B 73 PRO B 79 -1 O ALA B 74 N ILE B 45 SHEET 9 BA12 ASP B 93 LEU B 104 -1 O THR B 101 N THR B 77 SHEET 10 BA12 VAL B 107 ARG B 119 -1 O VAL B 107 N LEU B 104 SHEET 11 BA12 ARG B 124 ASN B 129 -1 O MET B 126 N GLN B 118 SHEET 12 BA12 THR B 161 GLU B 171 -1 O PHE B 166 N ASN B 129 SHEET 1 BB 2 VAL B 50 ASN B 51 0 SHEET 2 BB 2 THR B 161 GLU B 171 1 O PRO B 163 N VAL B 15 SITE 1 AC1 15 LYS A 18 ALA A 41 ARG A 57 VAL A 76 SITE 2 AC1 15 VAL A 78 VAL A 80 ILE A 135 ALA A 153 SITE 3 AC1 15 LEU A 155 SER A 159 VAL A 162 PHE A 166 SITE 4 AC1 15 LEU A 168 TYR A 170 HOH A2145 SITE 1 AC2 13 LYS B 18 ALA B 41 ARG B 57 ARG B 60 SITE 2 AC2 13 VAL B 80 ILE B 135 ALA B 153 LEU B 155 SITE 3 AC2 13 VAL B 162 PHE B 166 LEU B 168 TYR B 170 SITE 4 AC2 13 HOH B2239 SITE 1 AC3 8 GLN A 128 ASN A 129 GLN A 130 IMD A1175 SITE 2 AC3 8 GLN B 128 ASN B 129 GLN B 130 IMD B1176 SITE 1 AC4 6 GLN A 128 ASN A 129 ASP A 165 VAL A 167 SITE 2 AC4 6 IMD B1175 IMD B1176 SITE 1 AC5 6 IMD A1175 GLN B 128 ASN B 129 ASP B 165 SITE 2 AC5 6 VAL B 167 IMD B1175 CRYST1 63.378 64.360 84.732 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011802 0.00000 MTRIX1 1 0.961960 -0.081830 0.260660 -3.13641 1 MTRIX2 1 -0.085000 -0.996380 0.000870 37.54768 1 MTRIX3 1 0.259640 -0.023000 -0.965430 34.33506 1