HEADER HYDROLASE 21-JAN-10 2X36 TITLE STRUCTURE OF THE PROTEOLYTIC DOMAIN OF THE HUMAN MITOCHONDRIAL LON TITLE 2 PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LON PROTEASE HOMOLOG, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: PROTEOLYTIC DOMAIN, RESIDUES 753-959; COMPND 5 SYNONYM: LON PROTEASE-LIKE PROTEIN, LONP, LONHS, SERINE PROTEASE 15, COMPND 6 MITOCHONDRIAL ATP-DEPENDENT PROTEASE LON; COMPND 7 EC: 3.4.21.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA II; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PROEX KEYWDS HYDROLASE, CATALYTIC DYAD, TRANSIT PEPTIDE, MITOCHONDRIA EXPDTA X-RAY DIFFRACTION AUTHOR J.GARCIA,G.ONDROVICOVA,E.BLAGOVA,V.M.LEVDIKOV,J.A.BAUER,E.KUTEJOVA, AUTHOR 2 A.J.WILKINSON,K.S.WILSON REVDAT 4 20-DEC-23 2X36 1 REMARK REVDAT 3 09-MAR-11 2X36 1 JRNL REVDAT 2 03-NOV-10 2X36 1 COMPND SOURCE REMARK SEQRES REVDAT 1 19-MAY-10 2X36 0 JRNL AUTH J.GARCIA-NAFRIA,G.ONDROVICOVA,E.BLAGOVA,V.M.LEVDIKOV, JRNL AUTH 2 J.A.BAUER,C.K.SUZUKI,E.KUTEJOVA,A.J.WILKINSON,K.S.WILSON JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF THE HUMAN MITOCHONDRIAL JRNL TITL 2 LON PROTEASE: PROPOSED RELATION OF OLIGOMER FORMATION AND JRNL TITL 3 ACTIVITY. JRNL REF PROTEIN SCI. V. 19 987 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20222013 JRNL DOI 10.1002/PRO.376 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 77152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 4394 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 371 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8297 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.64000 REMARK 3 B22 (A**2) : 17.57000 REMARK 3 B33 (A**2) : -34.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.034 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.377 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8558 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5702 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11625 ; 2.095 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13966 ; 1.196 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1104 ; 7.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 327 ;37.862 ;23.394 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1401 ;20.004 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;20.568 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1352 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9505 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1690 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5492 ; 4.470 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2250 ; 1.586 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8847 ; 5.686 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3066 ; 7.911 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2777 ; 9.057 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.321 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.679 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2X36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395, 0.9395 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82419 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 2.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1RRE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANOL PH 6.5, 0.25 M REMARK 280 SODIUM ACETATE, 28% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.87500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 753 REMARK 465 GLU A 754 REMARK 465 ARG A 755 REMARK 465 ASP A 789 REMARK 465 LYS A 790 REMARK 465 ASP A 791 REMARK 465 ALA A 792 REMARK 465 LYS A 793 REMARK 465 GLY A 794 REMARK 465 ASP A 795 REMARK 465 LYS A 796 REMARK 465 ALA A 954 REMARK 465 LEU A 955 REMARK 465 ALA A 956 REMARK 465 VAL A 957 REMARK 465 GLU A 958 REMARK 465 ARG A 959 REMARK 465 VAL B 753 REMARK 465 GLU B 754 REMARK 465 ARG B 755 REMARK 465 ARG B 785 REMARK 465 ARG B 786 REMARK 465 PRO B 787 REMARK 465 GLN B 788 REMARK 465 ASP B 789 REMARK 465 LYS B 790 REMARK 465 ASP B 791 REMARK 465 ALA B 792 REMARK 465 LYS B 793 REMARK 465 GLY B 794 REMARK 465 ASP B 795 REMARK 465 LYS B 796 REMARK 465 ASP B 797 REMARK 465 ASP B 949 REMARK 465 GLU B 950 REMARK 465 GLN B 951 REMARK 465 ALA B 952 REMARK 465 GLU B 953 REMARK 465 ALA B 954 REMARK 465 LEU B 955 REMARK 465 ALA B 956 REMARK 465 VAL B 957 REMARK 465 GLU B 958 REMARK 465 ARG B 959 REMARK 465 VAL C 753 REMARK 465 GLU C 754 REMARK 465 ASP C 789 REMARK 465 LYS C 790 REMARK 465 ASP C 791 REMARK 465 ALA C 792 REMARK 465 LYS C 793 REMARK 465 GLY C 794 REMARK 465 ASP C 795 REMARK 465 ALA C 954 REMARK 465 LEU C 955 REMARK 465 ALA C 956 REMARK 465 VAL C 957 REMARK 465 GLU C 958 REMARK 465 ARG C 959 REMARK 465 VAL D 753 REMARK 465 GLU D 754 REMARK 465 ARG D 755 REMARK 465 MET D 756 REMARK 465 TYR D 757 REMARK 465 ASP D 758 REMARK 465 VAL D 759 REMARK 465 ARG D 786 REMARK 465 PRO D 787 REMARK 465 GLN D 788 REMARK 465 ASP D 789 REMARK 465 LYS D 790 REMARK 465 ASP D 791 REMARK 465 ALA D 792 REMARK 465 LYS D 793 REMARK 465 GLY D 794 REMARK 465 ASP D 795 REMARK 465 LYS D 796 REMARK 465 ASP D 949 REMARK 465 GLU D 950 REMARK 465 GLN D 951 REMARK 465 ALA D 952 REMARK 465 GLU D 953 REMARK 465 ALA D 954 REMARK 465 LEU D 955 REMARK 465 ALA D 956 REMARK 465 VAL D 957 REMARK 465 GLU D 958 REMARK 465 ARG D 959 REMARK 465 VAL E 753 REMARK 465 GLU E 754 REMARK 465 ARG E 755 REMARK 465 MET E 756 REMARK 465 TYR E 757 REMARK 465 PRO E 787 REMARK 465 GLN E 788 REMARK 465 ASP E 789 REMARK 465 LYS E 790 REMARK 465 ASP E 791 REMARK 465 ALA E 792 REMARK 465 LYS E 793 REMARK 465 GLY E 794 REMARK 465 ASP E 795 REMARK 465 LYS E 796 REMARK 465 ASP E 949 REMARK 465 GLU E 950 REMARK 465 GLN E 951 REMARK 465 ALA E 952 REMARK 465 GLU E 953 REMARK 465 ALA E 954 REMARK 465 LEU E 955 REMARK 465 ALA E 956 REMARK 465 VAL E 957 REMARK 465 GLU E 958 REMARK 465 ARG E 959 REMARK 465 VAL F 753 REMARK 465 GLU F 754 REMARK 465 ARG F 755 REMARK 465 MET F 756 REMARK 465 TYR F 757 REMARK 465 ASP F 758 REMARK 465 ARG F 786 REMARK 465 PRO F 787 REMARK 465 GLN F 788 REMARK 465 ASP F 789 REMARK 465 LYS F 790 REMARK 465 ASP F 791 REMARK 465 ALA F 792 REMARK 465 LYS F 793 REMARK 465 GLY F 794 REMARK 465 ASP F 795 REMARK 465 LYS F 796 REMARK 465 ASP F 949 REMARK 465 GLU F 950 REMARK 465 GLN F 951 REMARK 465 ALA F 952 REMARK 465 GLU F 953 REMARK 465 ALA F 954 REMARK 465 LEU F 955 REMARK 465 ALA F 956 REMARK 465 VAL F 957 REMARK 465 GLU F 958 REMARK 465 ARG F 959 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C 797 CB CG OD1 OD2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY B 804 REMARK 475 GLN B 805 REMARK 475 LEU B 806 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET F 773 SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 803 GLY B 804 -139.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH C 2031 DBREF 2X36 A 753 959 UNP P36776 LONM_HUMAN 753 959 DBREF 2X36 B 753 959 UNP P36776 LONM_HUMAN 753 959 DBREF 2X36 C 753 959 UNP P36776 LONM_HUMAN 753 959 DBREF 2X36 D 753 959 UNP P36776 LONM_HUMAN 753 959 DBREF 2X36 E 753 959 UNP P36776 LONM_HUMAN 753 959 DBREF 2X36 F 753 959 UNP P36776 LONM_HUMAN 753 959 SEQRES 1 A 207 VAL GLU ARG MET TYR ASP VAL THR PRO PRO GLY VAL VAL SEQRES 2 A 207 MET GLY LEU ALA TRP THR ALA MET GLY GLY SER THR LEU SEQRES 3 A 207 PHE VAL GLU THR SER LEU ARG ARG PRO GLN ASP LYS ASP SEQRES 4 A 207 ALA LYS GLY ASP LYS ASP GLY SER LEU GLU VAL THR GLY SEQRES 5 A 207 GLN LEU GLY GLU VAL MET LYS GLU SER ALA ARG ILE ALA SEQRES 6 A 207 TYR THR PHE ALA ARG ALA PHE LEU MET GLN HIS ALA PRO SEQRES 7 A 207 ALA ASN ASP TYR LEU VAL THR SER HIS ILE HIS LEU HIS SEQRES 8 A 207 VAL PRO GLU GLY ALA THR PRO LYS ASP GLY PRO SER ALA SEQRES 9 A 207 GLY CYS THR ILE VAL THR ALA LEU LEU SER LEU ALA MET SEQRES 10 A 207 GLY ARG PRO VAL ARG GLN ASN LEU ALA MET THR GLY GLU SEQRES 11 A 207 VAL SER LEU THR GLY LYS ILE LEU PRO VAL GLY GLY ILE SEQRES 12 A 207 LYS GLU LYS THR ILE ALA ALA LYS ARG ALA GLY VAL THR SEQRES 13 A 207 CYS ILE VAL LEU PRO ALA GLU ASN LYS LYS ASP PHE TYR SEQRES 14 A 207 ASP LEU ALA ALA PHE ILE THR GLU GLY LEU GLU VAL HIS SEQRES 15 A 207 PHE VAL GLU HIS TYR ARG GLU ILE PHE ASP ILE ALA PHE SEQRES 16 A 207 PRO ASP GLU GLN ALA GLU ALA LEU ALA VAL GLU ARG SEQRES 1 B 207 VAL GLU ARG MET TYR ASP VAL THR PRO PRO GLY VAL VAL SEQRES 2 B 207 MET GLY LEU ALA TRP THR ALA MET GLY GLY SER THR LEU SEQRES 3 B 207 PHE VAL GLU THR SER LEU ARG ARG PRO GLN ASP LYS ASP SEQRES 4 B 207 ALA LYS GLY ASP LYS ASP GLY SER LEU GLU VAL THR GLY SEQRES 5 B 207 GLN LEU GLY GLU VAL MET LYS GLU SER ALA ARG ILE ALA SEQRES 6 B 207 TYR THR PHE ALA ARG ALA PHE LEU MET GLN HIS ALA PRO SEQRES 7 B 207 ALA ASN ASP TYR LEU VAL THR SER HIS ILE HIS LEU HIS SEQRES 8 B 207 VAL PRO GLU GLY ALA THR PRO LYS ASP GLY PRO SER ALA SEQRES 9 B 207 GLY CYS THR ILE VAL THR ALA LEU LEU SER LEU ALA MET SEQRES 10 B 207 GLY ARG PRO VAL ARG GLN ASN LEU ALA MET THR GLY GLU SEQRES 11 B 207 VAL SER LEU THR GLY LYS ILE LEU PRO VAL GLY GLY ILE SEQRES 12 B 207 LYS GLU LYS THR ILE ALA ALA LYS ARG ALA GLY VAL THR SEQRES 13 B 207 CYS ILE VAL LEU PRO ALA GLU ASN LYS LYS ASP PHE TYR SEQRES 14 B 207 ASP LEU ALA ALA PHE ILE THR GLU GLY LEU GLU VAL HIS SEQRES 15 B 207 PHE VAL GLU HIS TYR ARG GLU ILE PHE ASP ILE ALA PHE SEQRES 16 B 207 PRO ASP GLU GLN ALA GLU ALA LEU ALA VAL GLU ARG SEQRES 1 C 207 VAL GLU ARG MET TYR ASP VAL THR PRO PRO GLY VAL VAL SEQRES 2 C 207 MET GLY LEU ALA TRP THR ALA MET GLY GLY SER THR LEU SEQRES 3 C 207 PHE VAL GLU THR SER LEU ARG ARG PRO GLN ASP LYS ASP SEQRES 4 C 207 ALA LYS GLY ASP LYS ASP GLY SER LEU GLU VAL THR GLY SEQRES 5 C 207 GLN LEU GLY GLU VAL MET LYS GLU SER ALA ARG ILE ALA SEQRES 6 C 207 TYR THR PHE ALA ARG ALA PHE LEU MET GLN HIS ALA PRO SEQRES 7 C 207 ALA ASN ASP TYR LEU VAL THR SER HIS ILE HIS LEU HIS SEQRES 8 C 207 VAL PRO GLU GLY ALA THR PRO LYS ASP GLY PRO SER ALA SEQRES 9 C 207 GLY CYS THR ILE VAL THR ALA LEU LEU SER LEU ALA MET SEQRES 10 C 207 GLY ARG PRO VAL ARG GLN ASN LEU ALA MET THR GLY GLU SEQRES 11 C 207 VAL SER LEU THR GLY LYS ILE LEU PRO VAL GLY GLY ILE SEQRES 12 C 207 LYS GLU LYS THR ILE ALA ALA LYS ARG ALA GLY VAL THR SEQRES 13 C 207 CYS ILE VAL LEU PRO ALA GLU ASN LYS LYS ASP PHE TYR SEQRES 14 C 207 ASP LEU ALA ALA PHE ILE THR GLU GLY LEU GLU VAL HIS SEQRES 15 C 207 PHE VAL GLU HIS TYR ARG GLU ILE PHE ASP ILE ALA PHE SEQRES 16 C 207 PRO ASP GLU GLN ALA GLU ALA LEU ALA VAL GLU ARG SEQRES 1 D 207 VAL GLU ARG MET TYR ASP VAL THR PRO PRO GLY VAL VAL SEQRES 2 D 207 MET GLY LEU ALA TRP THR ALA MET GLY GLY SER THR LEU SEQRES 3 D 207 PHE VAL GLU THR SER LEU ARG ARG PRO GLN ASP LYS ASP SEQRES 4 D 207 ALA LYS GLY ASP LYS ASP GLY SER LEU GLU VAL THR GLY SEQRES 5 D 207 GLN LEU GLY GLU VAL MET LYS GLU SER ALA ARG ILE ALA SEQRES 6 D 207 TYR THR PHE ALA ARG ALA PHE LEU MET GLN HIS ALA PRO SEQRES 7 D 207 ALA ASN ASP TYR LEU VAL THR SER HIS ILE HIS LEU HIS SEQRES 8 D 207 VAL PRO GLU GLY ALA THR PRO LYS ASP GLY PRO SER ALA SEQRES 9 D 207 GLY CYS THR ILE VAL THR ALA LEU LEU SER LEU ALA MET SEQRES 10 D 207 GLY ARG PRO VAL ARG GLN ASN LEU ALA MET THR GLY GLU SEQRES 11 D 207 VAL SER LEU THR GLY LYS ILE LEU PRO VAL GLY GLY ILE SEQRES 12 D 207 LYS GLU LYS THR ILE ALA ALA LYS ARG ALA GLY VAL THR SEQRES 13 D 207 CYS ILE VAL LEU PRO ALA GLU ASN LYS LYS ASP PHE TYR SEQRES 14 D 207 ASP LEU ALA ALA PHE ILE THR GLU GLY LEU GLU VAL HIS SEQRES 15 D 207 PHE VAL GLU HIS TYR ARG GLU ILE PHE ASP ILE ALA PHE SEQRES 16 D 207 PRO ASP GLU GLN ALA GLU ALA LEU ALA VAL GLU ARG SEQRES 1 E 207 VAL GLU ARG MET TYR ASP VAL THR PRO PRO GLY VAL VAL SEQRES 2 E 207 MET GLY LEU ALA TRP THR ALA MET GLY GLY SER THR LEU SEQRES 3 E 207 PHE VAL GLU THR SER LEU ARG ARG PRO GLN ASP LYS ASP SEQRES 4 E 207 ALA LYS GLY ASP LYS ASP GLY SER LEU GLU VAL THR GLY SEQRES 5 E 207 GLN LEU GLY GLU VAL MET LYS GLU SER ALA ARG ILE ALA SEQRES 6 E 207 TYR THR PHE ALA ARG ALA PHE LEU MET GLN HIS ALA PRO SEQRES 7 E 207 ALA ASN ASP TYR LEU VAL THR SER HIS ILE HIS LEU HIS SEQRES 8 E 207 VAL PRO GLU GLY ALA THR PRO LYS ASP GLY PRO SER ALA SEQRES 9 E 207 GLY CYS THR ILE VAL THR ALA LEU LEU SER LEU ALA MET SEQRES 10 E 207 GLY ARG PRO VAL ARG GLN ASN LEU ALA MET THR GLY GLU SEQRES 11 E 207 VAL SER LEU THR GLY LYS ILE LEU PRO VAL GLY GLY ILE SEQRES 12 E 207 LYS GLU LYS THR ILE ALA ALA LYS ARG ALA GLY VAL THR SEQRES 13 E 207 CYS ILE VAL LEU PRO ALA GLU ASN LYS LYS ASP PHE TYR SEQRES 14 E 207 ASP LEU ALA ALA PHE ILE THR GLU GLY LEU GLU VAL HIS SEQRES 15 E 207 PHE VAL GLU HIS TYR ARG GLU ILE PHE ASP ILE ALA PHE SEQRES 16 E 207 PRO ASP GLU GLN ALA GLU ALA LEU ALA VAL GLU ARG SEQRES 1 F 207 VAL GLU ARG MET TYR ASP VAL THR PRO PRO GLY VAL VAL SEQRES 2 F 207 MET GLY LEU ALA TRP THR ALA MET GLY GLY SER THR LEU SEQRES 3 F 207 PHE VAL GLU THR SER LEU ARG ARG PRO GLN ASP LYS ASP SEQRES 4 F 207 ALA LYS GLY ASP LYS ASP GLY SER LEU GLU VAL THR GLY SEQRES 5 F 207 GLN LEU GLY GLU VAL MET LYS GLU SER ALA ARG ILE ALA SEQRES 6 F 207 TYR THR PHE ALA ARG ALA PHE LEU MET GLN HIS ALA PRO SEQRES 7 F 207 ALA ASN ASP TYR LEU VAL THR SER HIS ILE HIS LEU HIS SEQRES 8 F 207 VAL PRO GLU GLY ALA THR PRO LYS ASP GLY PRO SER ALA SEQRES 9 F 207 GLY CYS THR ILE VAL THR ALA LEU LEU SER LEU ALA MET SEQRES 10 F 207 GLY ARG PRO VAL ARG GLN ASN LEU ALA MET THR GLY GLU SEQRES 11 F 207 VAL SER LEU THR GLY LYS ILE LEU PRO VAL GLY GLY ILE SEQRES 12 F 207 LYS GLU LYS THR ILE ALA ALA LYS ARG ALA GLY VAL THR SEQRES 13 F 207 CYS ILE VAL LEU PRO ALA GLU ASN LYS LYS ASP PHE TYR SEQRES 14 F 207 ASP LEU ALA ALA PHE ILE THR GLU GLY LEU GLU VAL HIS SEQRES 15 F 207 PHE VAL GLU HIS TYR ARG GLU ILE PHE ASP ILE ALA PHE SEQRES 16 F 207 PRO ASP GLU GLN ALA GLU ALA LEU ALA VAL GLU ARG FORMUL 7 HOH *328(H2 O) HELIX 1 1 GLY A 807 ALA A 829 1 23 HELIX 2 2 ASP A 833 SER A 838 1 6 HELIX 3 3 ASP A 852 SER A 855 5 4 HELIX 4 4 ALA A 856 GLY A 870 1 15 HELIX 5 5 GLY A 894 ALA A 905 1 12 HELIX 6 6 ASN A 916 ASP A 922 1 7 HELIX 7 7 ALA A 924 GLU A 929 1 6 HELIX 8 8 HIS A 938 PHE A 947 1 10 HELIX 9 9 GLY B 807 ALA B 829 1 23 HELIX 10 10 ASP B 833 SER B 838 1 6 HELIX 11 11 ASP B 852 SER B 855 5 4 HELIX 12 12 ALA B 856 MET B 869 1 14 HELIX 13 13 GLY B 894 ALA B 905 1 12 HELIX 14 14 ASN B 916 ASP B 922 1 7 HELIX 15 15 ALA B 924 GLU B 929 1 6 HELIX 16 16 HIS B 938 PHE B 947 1 10 HELIX 17 17 GLY C 807 ALA C 829 1 23 HELIX 18 18 ASP C 833 SER C 838 1 6 HELIX 19 19 ASP C 852 SER C 855 5 4 HELIX 20 20 ALA C 856 MET C 869 1 14 HELIX 21 21 GLY C 894 ALA C 905 1 12 HELIX 22 22 ASN C 916 ASP C 922 1 7 HELIX 23 23 ALA C 924 GLU C 929 1 6 HELIX 24 24 HIS C 938 PHE C 947 1 10 HELIX 25 25 GLY D 807 ALA D 829 1 23 HELIX 26 26 ASP D 833 SER D 838 1 6 HELIX 27 27 ASP D 852 SER D 855 5 4 HELIX 28 28 ALA D 856 GLY D 870 1 15 HELIX 29 29 GLY D 894 GLY D 906 1 13 HELIX 30 30 ASN D 916 ASP D 922 1 7 HELIX 31 31 ALA D 924 GLU D 929 1 6 HELIX 32 32 HIS D 938 PHE D 947 1 10 HELIX 33 33 GLY E 807 ALA E 829 1 23 HELIX 34 34 ASP E 833 SER E 838 1 6 HELIX 35 35 ASP E 852 SER E 855 5 4 HELIX 36 36 ALA E 856 GLY E 870 1 15 HELIX 37 37 GLY E 894 ALA E 905 1 12 HELIX 38 38 ASN E 916 ASP E 922 1 7 HELIX 39 39 ALA E 924 GLU E 929 1 6 HELIX 40 40 HIS E 938 PHE E 947 1 10 HELIX 41 41 GLY F 807 ALA F 829 1 23 HELIX 42 42 ASP F 833 SER F 838 1 6 HELIX 43 43 THR F 849 SER F 855 5 7 HELIX 44 44 ALA F 856 MET F 869 1 14 HELIX 45 45 GLY F 894 ALA F 905 1 12 HELIX 46 46 ASN F 916 ASP F 922 1 7 HELIX 47 47 ALA F 924 GLU F 929 1 6 HELIX 48 48 HIS F 938 PHE F 947 1 10 SHEET 1 AA 4 VAL A 764 TRP A 770 0 SHEET 2 AA 4 GLY A 775 LEU A 784 -1 O SER A 776 N ALA A 769 SHEET 3 AA 4 HIS A 839 HIS A 843 -1 O HIS A 841 N SER A 783 SHEET 4 AA 4 SER A 799 THR A 803 1 O SER A 799 N ILE A 840 SHEET 1 AB 3 LEU A 877 MET A 879 0 SHEET 2 AB 3 CYS A 909 PRO A 913 1 O CYS A 909 N ALA A 878 SHEET 3 AB 3 GLU A 932 VAL A 936 1 O GLU A 932 N ILE A 910 SHEET 1 AC 2 GLU A 882 VAL A 883 0 SHEET 2 AC 2 ILE A 889 LEU A 890 -1 O LEU A 890 N GLU A 882 SHEET 1 BA 7 SER B 799 THR B 803 0 SHEET 2 BA 7 HIS B 839 HIS B 843 1 O ILE B 840 N GLU B 801 SHEET 3 BA 7 GLY B 775 SER B 783 -1 O GLU B 781 N HIS B 843 SHEET 4 BA 7 VAL B 764 TRP B 770 -1 O VAL B 765 N VAL B 780 SHEET 5 BA 7 LEU B 877 MET B 879 1 O LEU B 877 N MET B 766 SHEET 6 BA 7 CYS B 909 PRO B 913 1 O CYS B 909 N ALA B 878 SHEET 7 BA 7 GLU B 932 VAL B 936 1 O GLU B 932 N ILE B 910 SHEET 1 BB 2 GLU B 882 VAL B 883 0 SHEET 2 BB 2 ILE B 889 LEU B 890 -1 O LEU B 890 N GLU B 882 SHEET 1 CA 7 SER C 799 THR C 803 0 SHEET 2 CA 7 HIS C 839 HIS C 843 1 O ILE C 840 N GLU C 801 SHEET 3 CA 7 GLY C 774 LEU C 784 -1 O GLU C 781 N HIS C 843 SHEET 4 CA 7 VAL C 765 THR C 771 -1 O VAL C 765 N VAL C 780 SHEET 5 CA 7 LEU C 877 MET C 879 1 O LEU C 877 N MET C 766 SHEET 6 CA 7 CYS C 909 PRO C 913 1 O CYS C 909 N ALA C 878 SHEET 7 CA 7 GLU C 932 VAL C 936 1 O GLU C 932 N ILE C 910 SHEET 1 CB 2 GLU C 882 VAL C 883 0 SHEET 2 CB 2 ILE C 889 LEU C 890 -1 O LEU C 890 N GLU C 882 SHEET 1 DA 7 SER D 799 THR D 803 0 SHEET 2 DA 7 HIS D 839 HIS D 843 1 O ILE D 840 N GLU D 801 SHEET 3 DA 7 GLY D 775 LEU D 784 -1 O GLU D 781 N HIS D 843 SHEET 4 DA 7 VAL D 764 TRP D 770 -1 O VAL D 765 N VAL D 780 SHEET 5 DA 7 ALA D 878 MET D 879 1 O MET D 879 N LEU D 768 SHEET 6 DA 7 CYS D 909 PRO D 913 1 O CYS D 909 N ALA D 878 SHEET 7 DA 7 GLU D 932 VAL D 936 1 O GLU D 932 N ILE D 910 SHEET 1 DB 2 GLU D 882 VAL D 883 0 SHEET 2 DB 2 ILE D 889 LEU D 890 -1 O LEU D 890 N GLU D 882 SHEET 1 EA 4 VAL E 764 THR E 771 0 SHEET 2 EA 4 GLY E 774 LEU E 784 -1 O GLY E 774 N THR E 771 SHEET 3 EA 4 HIS E 839 HIS E 843 -1 O HIS E 841 N SER E 783 SHEET 4 EA 4 SER E 799 THR E 803 1 O SER E 799 N ILE E 840 SHEET 1 EB 3 ALA E 878 MET E 879 0 SHEET 2 EB 3 CYS E 909 PRO E 913 1 O CYS E 909 N ALA E 878 SHEET 3 EB 3 GLU E 932 VAL E 936 1 O GLU E 932 N ILE E 910 SHEET 1 EC 2 GLU E 882 VAL E 883 0 SHEET 2 EC 2 ILE E 889 LEU E 890 -1 O LEU E 890 N GLU E 882 SHEET 1 FA 4 VAL F 764 THR F 771 0 SHEET 2 FA 4 GLY F 774 LEU F 784 -1 O GLY F 774 N THR F 771 SHEET 3 FA 4 HIS F 839 HIS F 843 -1 O HIS F 841 N SER F 783 SHEET 4 FA 4 SER F 799 THR F 803 1 O SER F 799 N ILE F 840 SHEET 1 FB 3 LEU F 877 MET F 879 0 SHEET 2 FB 3 CYS F 909 PRO F 913 1 O CYS F 909 N ALA F 878 SHEET 3 FB 3 GLU F 932 VAL F 936 1 O GLU F 932 N ILE F 910 SHEET 1 FC 2 GLU F 882 VAL F 883 0 SHEET 2 FC 2 ILE F 889 LEU F 890 -1 O LEU F 890 N GLU F 882 CRYST1 69.800 83.750 105.490 90.00 90.05 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014327 0.000000 0.000013 0.00000 SCALE2 0.000000 0.011940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009480 0.00000