HEADER LIGASE 24-JAN-10 2X3F TITLE CRYSTAL STRUCTURE OF THE METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS TITLE 2 SAR2676, A PANTOTHENATE SYNTHETASE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTHOTHENATE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PANTOATE--BETA-ALANINE LIGASE, PANTOATE-ACTIVATING ENZYME, COMPND 5 PS; COMPND 6 EC: 6.3.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 282458; SOURCE 4 STRAIN: MRSA252; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS LIGASE, ATP-BINDING, NUCLEOTIDE-BINDING, PANTOTHENATE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,M.F.WHITE,J.H.NAISMITH REVDAT 2 20-DEC-23 2X3F 1 REMARK REVDAT 1 21-JUL-10 2X3F 0 JRNL AUTH M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,X.YAN, JRNL AUTH 2 M.KEROU,N.D.WEIKART,N.KADI,M.A.SHEIKH,S.SCHMELZ,M.DORWARD, JRNL AUTH 3 M.ZAWADZKI,C.COZENS,H.FALCONER,H.POWERS,I.M.OVERTON, JRNL AUTH 4 C.A.J.VAN NIEKERK,X.PENG,P.PATEL,R.A.GARRETT,D.PRANGISHVILI, JRNL AUTH 5 C.H.BOTTING,P.J.COOTE,D.T.F.DRYDEN,G.J.BARTON, JRNL AUTH 6 U.SCHWARZ-LINEK,G.L.CHALLIS,G.L.TAYLOR,M.F.WHITE, JRNL AUTH 7 J.H.NAISMITH JRNL TITL THE SCOTTISH STRUCTURAL PROTEOMICS FACILITY: TARGETS, JRNL TITL 2 METHODS AND OUTPUTS. JRNL REF J.STRUCT.FUNCT.GENOM. V. 11 167 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20419351 JRNL DOI 10.1007/S10969-010-9090-Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.SEETHARAMAPPA,M.OKE,H.LIU,S.A.MCMAHON,K.A.JOHNSON, REMARK 1 AUTH 2 L.CARTER,M.DORWARD,M.ZAWADZKI,I.M.OVERTON,C.A.J.VAN NIEKIRK, REMARK 1 AUTH 3 S.GRAHAM,C.H.BOTTING,G.L.TAYLOR,M.F.WHITE,G.J.BARTON, REMARK 1 AUTH 4 P.J.COOTE,J.H.NAISMITH REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND DATA COLLECTION OF REMARK 1 TITL 2 METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS SAR2676, A REMARK 1 TITL 3 PANTOTHENATE SYNTHETASE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 488 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17554169 REMARK 1 DOI 10.1107/S1744309107020362 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0090 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 39073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2066 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4572 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3024 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6213 ; 1.237 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7444 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 5.715 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;39.878 ;24.925 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 813 ;13.278 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.098 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4997 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 857 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2807 ; 0.514 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1146 ; 0.127 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4568 ; 0.943 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1765 ; 1.686 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1639 ; 2.864 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 40.5450 52.3060 47.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.0058 REMARK 3 T33: 0.0315 T12: -0.0062 REMARK 3 T13: -0.0166 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.1677 L22: 2.0472 REMARK 3 L33: 1.9796 L12: -0.3886 REMARK 3 L13: 0.0812 L23: 0.0409 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.0289 S13: 0.2283 REMARK 3 S21: 0.0291 S22: 0.0125 S23: -0.0533 REMARK 3 S31: -0.1765 S32: 0.0496 S33: 0.0647 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 45.7230 44.1010 48.5290 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.0364 REMARK 3 T33: 0.1028 T12: 0.0131 REMARK 3 T13: 0.0658 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.4028 L22: 0.6958 REMARK 3 L33: 1.2209 L12: 0.6247 REMARK 3 L13: 0.2464 L23: 0.4242 REMARK 3 S TENSOR REMARK 3 S11: -0.1063 S12: 0.0244 S13: -0.1066 REMARK 3 S21: -0.1181 S22: 0.0593 S23: -0.2092 REMARK 3 S31: 0.1018 S32: 0.1890 S33: 0.0470 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1420 41.5690 39.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: 0.0295 REMARK 3 T33: 0.0167 T12: -0.0075 REMARK 3 T13: 0.0059 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.4789 L22: 0.4969 REMARK 3 L33: 2.7369 L12: 0.3315 REMARK 3 L13: -0.5989 L23: 0.1022 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: 0.0857 S13: -0.0372 REMARK 3 S21: -0.1046 S22: 0.0317 S23: -0.0409 REMARK 3 S31: 0.0724 S32: -0.0709 S33: 0.0516 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1283 A 1283 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5600 45.1170 36.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.1401 REMARK 3 T33: 0.1384 T12: -0.0409 REMARK 3 T13: -0.0127 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 7.1047 L22: 1.8365 REMARK 3 L33: 11.1822 L12: -3.5322 REMARK 3 L13: -6.7521 L23: 3.9720 REMARK 3 S TENSOR REMARK 3 S11: 0.2579 S12: 0.1686 S13: -0.0249 REMARK 3 S21: -0.1113 S22: -0.0583 S23: -0.0225 REMARK 3 S31: -0.1418 S32: -0.0078 S33: -0.1997 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8440 33.2650 23.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.0285 REMARK 3 T33: 0.0470 T12: -0.0146 REMARK 3 T13: -0.0019 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.1096 L22: 1.8918 REMARK 3 L33: 2.8376 L12: 0.6365 REMARK 3 L13: -0.0869 L23: 0.4069 REMARK 3 S TENSOR REMARK 3 S11: 0.0098 S12: 0.2016 S13: -0.1697 REMARK 3 S21: -0.2120 S22: -0.0441 S23: 0.0454 REMARK 3 S31: 0.1009 S32: -0.0811 S33: 0.0344 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1590 50.3190 66.5860 REMARK 3 T TENSOR REMARK 3 T11: 0.0303 T22: 0.0178 REMARK 3 T33: 0.0426 T12: 0.0219 REMARK 3 T13: -0.0031 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.9708 L22: 2.2054 REMARK 3 L33: 1.5235 L12: 0.5016 REMARK 3 L13: -0.0439 L23: 0.0719 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: -0.0187 S13: 0.2511 REMARK 3 S21: 0.0692 S22: 0.0609 S23: 0.0242 REMARK 3 S31: -0.1865 S32: -0.1131 S33: -0.0307 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4120 43.0080 63.9320 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.1282 REMARK 3 T33: 0.0678 T12: -0.0560 REMARK 3 T13: 0.0308 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.7966 L22: 2.1040 REMARK 3 L33: 0.8889 L12: -1.4309 REMARK 3 L13: -0.9188 L23: 0.1717 REMARK 3 S TENSOR REMARK 3 S11: -0.1610 S12: 0.0812 S13: -0.1305 REMARK 3 S21: 0.2062 S22: 0.0974 S23: 0.2686 REMARK 3 S31: 0.2257 S32: -0.2715 S33: 0.0636 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 112 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7830 37.9820 72.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.0474 REMARK 3 T33: 0.0612 T12: -0.0159 REMARK 3 T13: 0.0043 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.5440 L22: 0.4510 REMARK 3 L33: 3.6823 L12: -0.2365 REMARK 3 L13: -0.8263 L23: -0.5191 REMARK 3 S TENSOR REMARK 3 S11: -0.0712 S12: -0.0310 S13: -0.1131 REMARK 3 S21: 0.0533 S22: 0.0244 S23: 0.1071 REMARK 3 S31: 0.1154 S32: -0.0745 S33: 0.0469 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1283 B 1283 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0980 40.6260 76.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.0862 REMARK 3 T33: 0.0779 T12: 0.0151 REMARK 3 T13: -0.0070 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 8.7389 L22: 3.4649 REMARK 3 L33: 3.5683 L12: 0.4897 REMARK 3 L13: -5.2639 L23: 0.8726 REMARK 3 S TENSOR REMARK 3 S11: -0.1015 S12: -0.1407 S13: 0.0132 REMARK 3 S21: 0.1551 S22: 0.0954 S23: 0.0668 REMARK 3 S31: 0.1155 S32: 0.1240 S33: 0.0062 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 197 B 282 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0820 26.4380 85.6400 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0202 REMARK 3 T33: 0.0391 T12: 0.0061 REMARK 3 T13: -0.0214 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.4344 L22: 3.2675 REMARK 3 L33: 2.6112 L12: -0.6740 REMARK 3 L13: -1.1857 L23: 0.3647 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -0.0544 S13: -0.1549 REMARK 3 S21: -0.0019 S22: -0.0926 S23: 0.1060 REMARK 3 S31: 0.1186 S32: 0.0685 S33: 0.0991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS REMARK 3 THE STRUCTURE IS ONLY ORDERED FROM RESIDUE 2 TO 282 REMARK 4 REMARK 4 2X3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL ZERODUR MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39073 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 28.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1V8F REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.1M NA MES PH6.5, 0.2M REMARK 280 ZN ACETATE WITH 11.5MGML-1 AMP-CPP. THE CRYSTALS WERE REMARK 280 CRYOPROTECTED WITH OIL. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.59700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.78650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.78650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.59700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLU A 283 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 70 REMARK 465 GLU B 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 66 19.80 59.97 REMARK 500 GLN A 75 63.55 -166.03 REMARK 500 LEU A 117 -123.22 56.99 REMARK 500 ASP A 151 70.17 -101.07 REMARK 500 GLN B 75 60.42 -164.01 REMARK 500 LEU B 117 -129.99 56.57 REMARK 500 ASP B 151 78.54 -105.72 REMARK 500 SER B 186 145.82 -171.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC A 1283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC B 1283 DBREF 2X3F A -1 0 PDB 2X3F 2X3F -1 0 DBREF 2X3F A 1 283 UNP Q6GDK5 PANC_STAAR 1 283 DBREF 2X3F B -1 0 PDB 2X3F 2X3F -1 0 DBREF 2X3F B 1 283 UNP Q6GDK5 PANC_STAAR 1 283 SEQADV 2X3F GLY A -1 UNP Q6GDK5 EXPRESSION TAG SEQADV 2X3F ALA A 0 UNP Q6GDK5 EXPRESSION TAG SEQADV 2X3F GLY B -1 UNP Q6GDK5 EXPRESSION TAG SEQADV 2X3F ALA B 0 UNP Q6GDK5 EXPRESSION TAG SEQRES 1 A 285 GLY ALA MET THR LYS LEU ILE THR THR VAL LYS GLU MET SEQRES 2 A 285 GLN HIS ILE VAL LYS ALA ALA LYS ARG SER GLY THR THR SEQRES 3 A 285 ILE GLY PHE ILE PRO THR MET GLY ALA LEU HIS ASP GLY SEQRES 4 A 285 HIS LEU THR MET VAL ARG GLU SER VAL SER THR ASN ASP SEQRES 5 A 285 ILE THR VAL VAL SER VAL PHE VAL ASN PRO LEU GLN PHE SEQRES 6 A 285 GLY PRO ASN GLU ASP PHE ASP ALA TYR PRO ARG GLN ILE SEQRES 7 A 285 ASP LYS ASP LEU GLU LEU VAL SER GLU VAL GLY ALA ASP SEQRES 8 A 285 ILE VAL PHE HIS PRO ALA VAL GLU ASP MET TYR PRO GLY SEQRES 9 A 285 GLU LEU GLY ILE ASP VAL LYS VAL GLY PRO LEU ALA ASP SEQRES 10 A 285 VAL LEU GLU GLY ALA LYS ARG PRO GLY HIS PHE ASP GLY SEQRES 11 A 285 VAL VAL THR VAL VAL ASN LYS LEU PHE ASN ILE VAL MET SEQRES 12 A 285 PRO ASP TYR ALA TYR PHE GLY LYS LYS ASP ALA GLN GLN SEQRES 13 A 285 LEU ALA ILE VAL GLU GLN MET VAL LYS ASP PHE ASN HIS SEQRES 14 A 285 ALA VAL GLU ILE ILE GLY ILE ASP ILE VAL ARG GLU ALA SEQRES 15 A 285 ASP GLY LEU ALA LYS SER SER ARG ASN VAL TYR LEU THR SEQRES 16 A 285 GLU GLN GLU ARG GLN GLU ALA VAL HIS LEU SER LYS SER SEQRES 17 A 285 LEU LEU LEU ALA GLN ALA LEU TYR GLN ASP GLY GLU ARG SEQRES 18 A 285 GLN SER LYS VAL ILE ILE ASP LYS VAL THR GLN TYR LEU SEQRES 19 A 285 GLU SER HIS ILE SER GLY ARG ILE GLU GLU VAL ALA VAL SEQRES 20 A 285 TYR SER TYR PRO GLN LEU VAL GLU GLN HIS GLU ILE THR SEQRES 21 A 285 GLY ARG ILE PHE ILE SER LEU ALA VAL LYS PHE SER LYS SEQRES 22 A 285 ALA ARG LEU ILE ASP ASN ILE ILE ILE GLY ALA GLU SEQRES 1 B 285 GLY ALA MET THR LYS LEU ILE THR THR VAL LYS GLU MET SEQRES 2 B 285 GLN HIS ILE VAL LYS ALA ALA LYS ARG SER GLY THR THR SEQRES 3 B 285 ILE GLY PHE ILE PRO THR MET GLY ALA LEU HIS ASP GLY SEQRES 4 B 285 HIS LEU THR MET VAL ARG GLU SER VAL SER THR ASN ASP SEQRES 5 B 285 ILE THR VAL VAL SER VAL PHE VAL ASN PRO LEU GLN PHE SEQRES 6 B 285 GLY PRO ASN GLU ASP PHE ASP ALA TYR PRO ARG GLN ILE SEQRES 7 B 285 ASP LYS ASP LEU GLU LEU VAL SER GLU VAL GLY ALA ASP SEQRES 8 B 285 ILE VAL PHE HIS PRO ALA VAL GLU ASP MET TYR PRO GLY SEQRES 9 B 285 GLU LEU GLY ILE ASP VAL LYS VAL GLY PRO LEU ALA ASP SEQRES 10 B 285 VAL LEU GLU GLY ALA LYS ARG PRO GLY HIS PHE ASP GLY SEQRES 11 B 285 VAL VAL THR VAL VAL ASN LYS LEU PHE ASN ILE VAL MET SEQRES 12 B 285 PRO ASP TYR ALA TYR PHE GLY LYS LYS ASP ALA GLN GLN SEQRES 13 B 285 LEU ALA ILE VAL GLU GLN MET VAL LYS ASP PHE ASN HIS SEQRES 14 B 285 ALA VAL GLU ILE ILE GLY ILE ASP ILE VAL ARG GLU ALA SEQRES 15 B 285 ASP GLY LEU ALA LYS SER SER ARG ASN VAL TYR LEU THR SEQRES 16 B 285 GLU GLN GLU ARG GLN GLU ALA VAL HIS LEU SER LYS SER SEQRES 17 B 285 LEU LEU LEU ALA GLN ALA LEU TYR GLN ASP GLY GLU ARG SEQRES 18 B 285 GLN SER LYS VAL ILE ILE ASP LYS VAL THR GLN TYR LEU SEQRES 19 B 285 GLU SER HIS ILE SER GLY ARG ILE GLU GLU VAL ALA VAL SEQRES 20 B 285 TYR SER TYR PRO GLN LEU VAL GLU GLN HIS GLU ILE THR SEQRES 21 B 285 GLY ARG ILE PHE ILE SER LEU ALA VAL LYS PHE SER LYS SEQRES 22 B 285 ALA ARG LEU ILE ASP ASN ILE ILE ILE GLY ALA GLU HET APC A1283 31 HET SO4 A1284 5 HET APC B1283 31 HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM SO4 SULFATE ION HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 3 APC 2(C11 H18 N5 O12 P3) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *222(H2 O) HELIX 1 1 THR A 7 GLY A 22 1 16 HELIX 2 2 HIS A 35 ASN A 49 1 15 HELIX 3 3 ASN A 59 PHE A 63 5 5 HELIX 4 4 GLN A 75 VAL A 86 1 12 HELIX 5 5 ALA A 95 TYR A 100 1 6 HELIX 6 6 PRO A 112 ASP A 115 5 4 HELIX 7 7 LEU A 117 ARG A 122 1 6 HELIX 8 8 GLY A 124 MET A 141 1 18 HELIX 9 9 ASP A 151 ASN A 166 1 16 HELIX 10 10 SER A 186 LEU A 192 5 7 HELIX 11 11 THR A 193 VAL A 201 1 9 HELIX 12 12 VAL A 201 ASP A 216 1 16 HELIX 13 13 GLN A 220 SER A 234 1 15 HELIX 14 14 THR B 7 GLY B 22 1 16 HELIX 15 15 HIS B 35 ASN B 49 1 15 HELIX 16 16 ASN B 59 PHE B 63 5 5 HELIX 17 17 GLN B 75 VAL B 86 1 12 HELIX 18 18 ALA B 95 TYR B 100 1 6 HELIX 19 19 PRO B 112 ASP B 115 5 4 HELIX 20 20 VAL B 116 ARG B 122 1 7 HELIX 21 21 GLY B 124 MET B 141 1 18 HELIX 22 22 ASP B 151 ASN B 166 1 16 HELIX 23 23 SER B 186 LEU B 192 5 7 HELIX 24 24 THR B 193 ALA B 200 1 8 HELIX 25 25 VAL B 201 ASP B 216 1 16 HELIX 26 26 GLN B 220 SER B 234 1 15 SHEET 1 AA 6 LYS A 3 ILE A 5 0 SHEET 2 AA 6 ILE A 90 PHE A 92 1 O VAL A 91 N ILE A 5 SHEET 3 AA 6 ILE A 51 VAL A 56 1 O VAL A 54 N PHE A 92 SHEET 4 AA 6 ILE A 25 THR A 30 1 O GLY A 26 N VAL A 53 SHEET 5 AA 6 TYR A 144 GLY A 148 1 O TYR A 144 N PHE A 27 SHEET 6 AA 6 GLU A 170 ILE A 174 1 O GLU A 170 N ALA A 145 SHEET 1 AB 2 ILE A 106 VAL A 110 0 SHEET 2 AB 2 ILE B 106 VAL B 110 -1 O ASP B 107 N LYS A 109 SHEET 1 AC 3 ARG A 239 SER A 247 0 SHEET 2 AC 3 ILE A 261 LYS A 268 -1 O PHE A 262 N TYR A 246 SHEET 3 AC 3 ARG A 273 ILE A 280 -1 O LEU A 274 N VAL A 267 SHEET 1 BA 6 LYS B 3 ILE B 5 0 SHEET 2 BA 6 ILE B 90 PHE B 92 1 O VAL B 91 N ILE B 5 SHEET 3 BA 6 ILE B 51 VAL B 56 1 O VAL B 54 N PHE B 92 SHEET 4 BA 6 ILE B 25 THR B 30 1 O GLY B 26 N VAL B 53 SHEET 5 BA 6 TYR B 144 GLY B 148 1 O TYR B 144 N PHE B 27 SHEET 6 BA 6 GLU B 170 ILE B 174 1 O GLU B 170 N ALA B 145 SHEET 1 BB 3 ARG B 239 SER B 247 0 SHEET 2 BB 3 ILE B 261 LYS B 268 -1 O PHE B 262 N TYR B 246 SHEET 3 BB 3 ARG B 273 ILE B 280 -1 O LEU B 274 N VAL B 267 CISPEP 1 TYR A 248 PRO A 249 0 6.29 CISPEP 2 TYR B 248 PRO B 249 0 5.90 SITE 1 AC1 20 PRO A 29 THR A 30 MET A 31 HIS A 35 SITE 2 AC1 20 HIS A 38 MET A 41 TYR A 72 PHE A 147 SITE 3 AC1 20 GLY A 148 LYS A 150 ASP A 151 ASP A 175 SITE 4 AC1 20 ILE A 176 VAL A 177 LYS A 185 SER A 186 SITE 5 AC1 20 SER A 187 ARG A 188 SO4 A1284 HOH A2010 SITE 1 AC2 8 MET A 31 GLN A 62 ARG A 122 HIS A 125 SITE 2 AC2 8 ARG A 188 APC A1283 HOH A2048 HOH A2110 SITE 1 AC3 19 PRO B 29 MET B 31 HIS B 35 HIS B 38 SITE 2 AC3 19 MET B 41 TYR B 72 PHE B 147 GLY B 148 SITE 3 AC3 19 LYS B 150 ASP B 151 ASP B 175 ILE B 176 SITE 4 AC3 19 VAL B 177 LYS B 185 SER B 186 SER B 187 SITE 5 AC3 19 ARG B 188 HOH B2014 HOH B2087 CRYST1 45.194 86.560 141.573 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007063 0.00000