HEADER HYDROLASE 28-JAN-10 2X41 TITLE STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN TITLE 2 COMPLEX WITH GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-GLUCOSIDASE 3B; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA NEAPOLITANA; SOURCE 3 ORGANISM_TAXID: 309803; SOURCE 4 STRAIN: DSM 4359; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-22B; SOURCE 10 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE, TIM BARREL FOLD, FIBRONECTIN TYPE III FOLD EXPDTA X-RAY DIFFRACTION AUTHOR T.POZZO,E.N.KARLSSON,D.T.LOGAN REVDAT 7 20-DEC-23 2X41 1 HETSYN REVDAT 6 29-JUL-20 2X41 1 COMPND REMARK HETNAM SITE REVDAT 5 15-MAY-19 2X41 1 REMARK REVDAT 4 17-JAN-18 2X41 1 REMARK REVDAT 3 23-MAR-10 2X41 1 JRNL REVDAT 2 16-FEB-10 2X41 1 JRNL REMARK REVDAT 1 09-FEB-10 2X41 0 JRNL AUTH T.POZZO,J.LINARES PASTEN,E.N.KARLSSON,D.T.LOGAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF BETA-GLUCOSIDASE 3B JRNL TITL 2 FROM THERMOTOGA NEAPOLITANA: A THERMOSTABLE 3-DOMAIN JRNL TITL 3 REPRESENTATIVE OF GLYCOSIDE HYDROLASE FAMILY 3 JRNL REF J.MOL.BIOL. V. 397 724 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20138890 JRNL DOI 10.1016/J.JMB.2010.01.072 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.TURNER,A.PRAMHED,E.KANDERS,M.HEDSTROM,E.N.KARLSSON, REMARK 1 AUTH 2 D.T.LOGAN REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY DIFFRACTION ANALYSIS OF THERMOTOGA NEAPOLITANA REMARK 1 TITL 3 BETA-GLUCOSIDASE B. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 802 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17768360 REMARK 1 DOI 10.1107/S1744309107040341 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 53081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.7211 - 5.4548 0.95 2699 143 0.1626 0.1869 REMARK 3 2 5.4548 - 4.3356 0.96 2647 141 0.1371 0.1702 REMARK 3 3 4.3356 - 3.7893 0.97 2633 136 0.1424 0.1621 REMARK 3 4 3.7893 - 3.4437 0.97 2641 139 0.1646 0.2008 REMARK 3 5 3.4437 - 3.1973 0.99 2673 142 0.1805 0.2063 REMARK 3 6 3.1973 - 3.0090 0.99 2657 140 0.1939 0.2550 REMARK 3 7 3.0090 - 2.8585 0.99 2662 140 0.1963 0.2546 REMARK 3 8 2.8585 - 2.7342 0.99 2670 141 0.1963 0.2462 REMARK 3 9 2.7342 - 2.6290 0.99 2668 141 0.1994 0.2499 REMARK 3 10 2.6290 - 2.5384 0.99 2652 140 0.1966 0.2649 REMARK 3 11 2.5384 - 2.4591 1.00 2666 140 0.2039 0.2472 REMARK 3 12 2.4591 - 2.3888 1.00 2637 138 0.2038 0.2995 REMARK 3 13 2.3888 - 2.3260 0.99 2613 158 0.2135 0.2678 REMARK 3 14 2.3260 - 2.2693 0.99 2660 139 0.2422 0.2935 REMARK 3 15 2.2693 - 2.2177 1.00 2660 137 0.2555 0.2614 REMARK 3 16 2.2177 - 2.1705 0.99 2640 142 0.2419 0.3128 REMARK 3 17 2.1705 - 2.1271 1.00 2596 151 0.2318 0.2869 REMARK 3 18 2.1271 - 2.0870 1.00 2662 142 0.2581 0.2909 REMARK 3 19 2.0870 - 2.0497 0.99 2652 143 0.2856 0.3173 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 43.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38230 REMARK 3 B22 (A**2) : 4.77350 REMARK 3 B33 (A**2) : -3.39110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5810 REMARK 3 ANGLE : 0.776 7857 REMARK 3 CHIRALITY : 0.055 851 REMARK 3 PLANARITY : 0.003 1027 REMARK 3 DIHEDRAL : 16.810 2173 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:320) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2920 24.8435 -22.0490 REMARK 3 T TENSOR REMARK 3 T11: 0.4625 T22: 0.2331 REMARK 3 T33: 0.1908 T12: -0.1121 REMARK 3 T13: 0.0087 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.0115 L22: 1.4712 REMARK 3 L33: 0.9574 L12: 0.4564 REMARK 3 L13: -0.0765 L23: -0.0597 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: 0.0622 S13: 0.1003 REMARK 3 S21: -0.4664 S22: 0.1041 S23: -0.0297 REMARK 3 S31: -0.3386 S32: 0.1435 S33: -0.0589 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 321:536) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5943 12.8906 -25.5721 REMARK 3 T TENSOR REMARK 3 T11: 0.3710 T22: 0.2587 REMARK 3 T33: 0.4928 T12: 0.0321 REMARK 3 T13: -0.3063 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.3696 L22: 1.7260 REMARK 3 L33: 2.1909 L12: -0.1713 REMARK 3 L13: 0.3101 L23: 0.4417 REMARK 3 S TENSOR REMARK 3 S11: -0.0799 S12: -0.0558 S13: 0.1230 REMARK 3 S21: -0.4999 S22: -0.0119 S23: 0.6663 REMARK 3 S31: -0.3119 S32: -0.3386 S33: 0.1209 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 537:599) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2682 5.8766 -8.6881 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2164 REMARK 3 T33: 0.2763 T12: -0.0086 REMARK 3 T13: -0.0507 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.3915 L22: 0.8173 REMARK 3 L33: 0.5617 L12: -0.1032 REMARK 3 L13: -0.0197 L23: -0.5908 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.0674 S13: -0.0382 REMARK 3 S21: -0.0367 S22: 0.0231 S23: 0.2895 REMARK 3 S31: 0.0356 S32: -0.0799 S33: -0.0344 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 600:721) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2489 -8.2825 -20.4809 REMARK 3 T TENSOR REMARK 3 T11: 0.3398 T22: 0.2309 REMARK 3 T33: 0.1790 T12: 0.0027 REMARK 3 T13: 0.0005 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 0.4159 L22: 1.8254 REMARK 3 L33: 0.5966 L12: -0.5074 REMARK 3 L13: 0.0226 L23: -0.5136 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.0970 S13: -0.2120 REMARK 3 S21: -0.3912 S22: 0.0229 S23: -0.0005 REMARK 3 S31: 0.3212 S32: 0.2384 S33: -0.0520 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53087 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 26.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC, PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2X40 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3-5 MG/ML PROTEIN, 16-18 % PEG 3350, REMARK 280 0.2 M NABR, 90 MM BIS-TRIS PROPANE PH 7.4, 20C, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.14500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.14500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.14500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.23000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.14500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.56500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.23000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 418 REMARK 465 SER A 419 REMARK 465 TRP A 420 REMARK 465 GLY A 421 REMARK 465 THR A 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 29 -133.87 55.16 REMARK 500 MET A 120 30.50 -146.39 REMARK 500 LYS A 226 -63.07 -107.49 REMARK 500 ARG A 230 -62.06 -92.42 REMARK 500 ASN A 341 89.78 -153.66 REMARK 500 ARG A 416 -156.29 -112.14 REMARK 500 ASN A 431 42.16 -103.11 REMARK 500 ASP A 468 -100.06 -123.39 REMARK 500 TRP A 519 -140.19 50.26 REMARK 500 ASN A 566 63.48 -155.07 REMARK 500 ASP A 575 -131.65 60.31 REMARK 500 GLU A 615 -30.71 -130.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X42 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH ALPHA- D-GLUCOSE REMARK 900 RELATED ID: 2X40 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 2WT6 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 2WT3 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLUCOSE : A THERMOSTABLE 3-DOMAIN REPRESENTATIVE OF REMARK 900 GLYCOSIDE HYDROLASE FAMILY 3 REMARK 900 RELATED ID: 2WT5 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH ALPHA- D-GLUCOSE DBREF 2X41 A 1 721 UNP Q0GC07 Q0GC07_THENN 1 721 SEQRES 1 A 721 MET GLU LYS VAL ASN GLU ILE LEU SER GLN LEU THR LEU SEQRES 2 A 721 GLU GLU LYS VAL LYS LEU VAL VAL GLY VAL GLY LEU PRO SEQRES 3 A 721 GLY LEU PHE GLY ASN PRO HIS SER ARG VAL ALA GLY ALA SEQRES 4 A 721 ALA GLY GLU THR HIS PRO VAL PRO ARG VAL GLY LEU PRO SEQRES 5 A 721 ALA PHE VAL LEU ALA ASP GLY PRO ALA GLY LEU ARG ILE SEQRES 6 A 721 ASN PRO THR ARG GLU ASN ASP GLU ASN THR TYR TYR THR SEQRES 7 A 721 THR ALA PHE PRO VAL GLU ILE MET LEU ALA SER THR TRP SEQRES 8 A 721 ASN ARG GLU LEU LEU GLU GLU VAL GLY LYS ALA MET GLY SEQRES 9 A 721 GLU GLU VAL ARG GLU TYR GLY VAL ASP VAL LEU LEU ALA SEQRES 10 A 721 PRO ALA MET ASN ILE HIS ARG ASN PRO LEU CYS GLY ARG SEQRES 11 A 721 ASN PHE GLU TYR TYR SER GLU ASP PRO VAL LEU SER GLY SEQRES 12 A 721 GLU MET ALA SER SER PHE VAL LYS GLY VAL GLN SER GLN SEQRES 13 A 721 GLY VAL GLY ALA CYS ILE LYS HIS PHE VAL ALA ASN ASN SEQRES 14 A 721 GLN GLU THR ASN ARG MET VAL VAL ASP THR ILE VAL SER SEQRES 15 A 721 GLU ARG ALA LEU ARG GLU ILE TYR LEU ARG GLY PHE GLU SEQRES 16 A 721 ILE ALA VAL LYS LYS SER LYS PRO TRP SER VAL MET SER SEQRES 17 A 721 ALA TYR ASN LYS LEU ASN GLY LYS TYR CYS SER GLN ASN SEQRES 18 A 721 GLU TRP LEU LEU LYS LYS VAL LEU ARG GLU GLU TRP GLY SEQRES 19 A 721 PHE GLU GLY PHE VAL MET SER ASP TRP TYR ALA GLY ASP SEQRES 20 A 721 ASN PRO VAL GLU GLN LEU LYS ALA GLY ASN ASP LEU ILE SEQRES 21 A 721 MET PRO GLY LYS ALA TYR GLN VAL ASN THR GLU ARG ARG SEQRES 22 A 721 ASP GLU ILE GLU GLU ILE MET GLU ALA LEU LYS GLU GLY SEQRES 23 A 721 LYS LEU SER GLU GLU VAL LEU ASP GLU CYS VAL ARG ASN SEQRES 24 A 721 ILE LEU LYS VAL LEU VAL ASN ALA PRO SER PHE LYS ASN SEQRES 25 A 721 TYR ARG TYR SER ASN LYS PRO ASP LEU GLU LYS HIS ALA SEQRES 26 A 721 LYS VAL ALA TYR GLU ALA GLY ALA GLU GLY VAL VAL LEU SEQRES 27 A 721 LEU ARG ASN GLU GLU ALA LEU PRO LEU SER GLU ASN SER SEQRES 28 A 721 LYS ILE ALA LEU PHE GLY THR GLY GLN ILE GLU THR ILE SEQRES 29 A 721 LYS GLY GLY THR GLY SER GLY ASP THR HIS PRO ARG TYR SEQRES 30 A 721 ALA ILE SER ILE LEU GLU GLY ILE LYS GLU ARG GLY LEU SEQRES 31 A 721 ASN PHE ASP GLU GLU LEU ALA LYS THR TYR GLU ASP TYR SEQRES 32 A 721 ILE LYS LYS MET ARG GLU THR GLU GLU TYR LYS PRO ARG SEQRES 33 A 721 ARG ASP SER TRP GLY THR ILE ILE LYS PRO LYS LEU PRO SEQRES 34 A 721 GLU ASN PHE LEU SER GLU LYS GLU ILE HIS LYS LEU ALA SEQRES 35 A 721 LYS LYS ASN ASP VAL ALA VAL ILE VAL ILE SER ARG ILE SEQRES 36 A 721 SER GLY GLU GLY TYR ASP ARG LYS PRO VAL LYS GLY ASP SEQRES 37 A 721 PHE TYR LEU SER ASP ASP GLU THR ASP LEU ILE LYS THR SEQRES 38 A 721 VAL SER ARG GLU PHE HIS GLU GLN GLY LYS LYS VAL ILE SEQRES 39 A 721 VAL LEU LEU ASN ILE GLY SER PRO VAL GLU VAL VAL SER SEQRES 40 A 721 TRP ARG ASP LEU VAL ASP GLY ILE LEU LEU VAL TRP GLN SEQRES 41 A 721 ALA GLY GLN GLU THR GLY ARG ILE VAL ALA ASP VAL LEU SEQRES 42 A 721 THR GLY ARG ILE ASN PRO SER GLY LYS LEU PRO THR THR SEQRES 43 A 721 PHE PRO ARG ASP TYR SER ASP VAL PRO SER TRP THR PHE SEQRES 44 A 721 PRO GLY GLU PRO LYS ASP ASN PRO GLN LYS VAL VAL TYR SEQRES 45 A 721 GLU GLU ASP ILE TYR VAL GLY TYR ARG TYR TYR ASP THR SEQRES 46 A 721 PHE GLY VAL GLU PRO ALA TYR GLU PHE GLY TYR GLY LEU SEQRES 47 A 721 SER TYR THR THR PHE GLU TYR SER ASP LEU ASN VAL SER SEQRES 48 A 721 PHE ASP GLY GLU THR LEU ARG VAL GLN TYR ARG ILE GLU SEQRES 49 A 721 ASN THR GLY GLY ARG ALA GLY LYS GLU VAL SER GLN VAL SEQRES 50 A 721 TYR ILE LYS ALA PRO LYS GLY LYS ILE ASP LYS PRO PHE SEQRES 51 A 721 GLN GLU LEU LYS ALA PHE HIS LYS THR ARG LEU LEU ASN SEQRES 52 A 721 PRO GLY GLU SER GLU GLU VAL VAL LEU GLU ILE PRO VAL SEQRES 53 A 721 ARG ASP LEU ALA SER PHE ASN GLY GLU GLU TRP VAL VAL SEQRES 54 A 721 GLU ALA GLY GLU TYR GLU VAL ARG VAL GLY ALA SER SER SEQRES 55 A 721 ARG ASN ILE LYS LEU LYS GLY THR PHE SER VAL GLY GLU SEQRES 56 A 721 GLU ARG ARG PHE LYS PRO HET BR A1722 1 HET BR A1723 1 HET BR A1724 1 HET BR A1725 1 HET BGC A1726 12 HETNAM BR BROMIDE ION HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 BR 4(BR 1-) FORMUL 6 BGC C6 H12 O6 FORMUL 7 HOH *353(H2 O) HELIX 1 1 GLU A 2 LEU A 11 1 10 HELIX 2 2 THR A 12 VAL A 20 1 9 HELIX 3 3 PRO A 47 GLY A 50 5 4 HELIX 4 4 VAL A 83 THR A 90 1 8 HELIX 5 5 ASN A 92 TYR A 110 1 19 HELIX 6 6 ARG A 130 TYR A 134 5 5 HELIX 7 7 ASP A 138 SER A 155 1 18 HELIX 8 8 SER A 182 ILE A 189 1 8 HELIX 9 9 ILE A 189 LYS A 202 1 14 HELIX 10 10 ASN A 221 LYS A 226 1 6 HELIX 11 11 LYS A 227 TRP A 233 1 7 HELIX 12 12 ASN A 248 GLY A 256 1 9 HELIX 13 13 LYS A 264 VAL A 268 5 5 HELIX 14 14 ASP A 274 GLU A 285 1 12 HELIX 15 15 SER A 289 VAL A 305 1 17 HELIX 16 16 ASN A 306 ASN A 312 5 7 HELIX 17 17 ASP A 320 VAL A 336 1 17 HELIX 18 18 GLY A 357 ILE A 361 5 5 HELIX 19 19 SER A 380 ARG A 388 1 9 HELIX 20 20 ASP A 393 THR A 410 1 18 HELIX 21 21 SER A 434 ASN A 445 1 12 HELIX 22 22 SER A 472 GLN A 489 1 18 HELIX 23 23 TRP A 508 VAL A 512 5 5 HELIX 24 24 ALA A 521 GLN A 523 5 3 HELIX 25 25 GLU A 524 THR A 534 1 11 HELIX 26 26 ASP A 550 VAL A 554 5 5 HELIX 27 27 GLY A 579 GLY A 587 1 9 HELIX 28 28 ARG A 677 ALA A 680 5 4 SHEET 1 AA 3 GLY A 41 GLU A 42 0 SHEET 2 AA 3 VAL A 55 ALA A 57 -1 O LEU A 56 N GLY A 41 SHEET 3 AA 3 VAL A 114 LEU A 115 1 O VAL A 114 N ALA A 57 SHEET 1 AB 3 CYS A 161 PHE A 165 0 SHEET 2 AB 3 SER A 205 SER A 208 1 O SER A 205 N ILE A 162 SHEET 3 AB 3 PHE A 238 SER A 241 1 O PHE A 238 N VAL A 206 SHEET 1 AC 4 LYS A 216 TYR A 217 0 SHEET 2 AC 4 LYS A 212 LEU A 213 -1 O LEU A 213 N LYS A 216 SHEET 3 AC 4 ASP A 178 ILE A 180 1 N THR A 179 O LYS A 212 SHEET 4 AC 4 LYS A 569 VAL A 571 1 O VAL A 570 N ILE A 180 SHEET 1 AD 5 VAL A 337 ASN A 341 0 SHEET 2 AD 5 GLY A 514 LEU A 517 -1 O ILE A 515 N LEU A 339 SHEET 3 AD 5 VAL A 493 ASN A 498 1 O VAL A 495 N LEU A 516 SHEET 4 AD 5 VAL A 447 SER A 453 1 O ALA A 448 N ILE A 494 SHEET 5 AD 5 ILE A 353 PHE A 356 1 O ALA A 354 N VAL A 449 SHEET 1 AE 2 PHE A 547 PRO A 548 0 SHEET 2 AE 2 PRO A 590 TYR A 592 -1 N ALA A 591 O PHE A 547 SHEET 1 AF 3 PHE A 603 PHE A 612 0 SHEET 2 AF 3 THR A 616 ASN A 625 -1 O ARG A 618 N SER A 611 SHEET 3 AF 3 SER A 667 PRO A 675 -1 O GLU A 668 N ILE A 623 SHEET 1 AG 4 GLU A 652 LYS A 658 0 SHEET 2 AG 4 VAL A 634 LYS A 640 -1 O SER A 635 N HIS A 657 SHEET 3 AG 4 GLY A 692 SER A 701 -1 O GLU A 695 N LYS A 640 SHEET 4 AG 4 ASN A 704 VAL A 713 -1 O ASN A 704 N ALA A 700 SHEET 1 AH 3 SER A 681 PHE A 682 0 SHEET 2 AH 3 TRP A 687 VAL A 689 -1 O VAL A 688 N SER A 681 SHEET 3 AH 3 ARG A 717 PHE A 719 -1 O ARG A 717 N VAL A 689 CISPEP 1 ASP A 58 GLY A 59 0 -0.13 CISPEP 2 ALA A 117 PRO A 118 0 2.87 CISPEP 3 LYS A 163 HIS A 164 0 -6.14 CISPEP 4 PHE A 165 VAL A 166 0 2.82 CISPEP 5 MET A 261 PRO A 262 0 -4.48 CISPEP 6 LEU A 345 PRO A 346 0 -1.50 CISPEP 7 PHE A 559 PRO A 560 0 3.80 CISPEP 8 GLU A 562 PRO A 563 0 -5.36 CRYST1 75.130 128.460 176.290 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005672 0.00000