data_2X48 # _entry.id 2X48 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2X48 PDBE EBI-42680 WWPDB D_1290042680 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2X48 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-01-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Oke, M.' 1 'Carter, L.' 2 'Johnson, K.A.' 3 'Liu, H.' 4 'Mcmahon, S.' 5 'Naismith, J.H.' 6 'White, M.F.' 7 # _citation.id primary _citation.title 'The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.' _citation.journal_abbrev J.Struct.Funct.Genomics _citation.journal_volume 11 _citation.page_first 167 _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1345-711X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20419351 _citation.pdbx_database_id_DOI 10.1007/S10969-010-9090-Y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Oke, M.' 1 primary 'Carter, L.G.' 2 primary 'Johnson, K.A.' 3 primary 'Liu, H.' 4 primary 'Mcmahon, S.A.' 5 primary 'Yan, X.' 6 primary 'Kerou, M.' 7 primary 'Weikart, N.D.' 8 primary 'Kadi, N.' 9 primary 'Sheikh, M.A.' 10 primary 'Schmelz, S.' 11 primary 'Dorward, M.' 12 primary 'Zawadzki, M.' 13 primary 'Cozens, C.' 14 primary 'Falconer, H.' 15 primary 'Powers, H.' 16 primary 'Overton, I.M.' 17 primary 'Van Niekerk, C.A.J.' 18 primary 'Peng, X.' 19 primary 'Patel, P.' 20 primary 'Garrett, R.A.' 21 primary 'Prangishvili, D.' 22 primary 'Botting, C.H.' 23 primary 'Coote, P.J.' 24 primary 'Dryden, D.T.F.' 25 primary 'Barton, G.J.' 26 primary 'Schwarz-Linek, U.' 27 primary 'Challis, G.L.' 28 primary 'Taylor, G.L.' 29 primary 'White, M.F.' 30 primary 'Naismith, J.H.' 31 # _cell.entry_id 2X48 _cell.length_a 119.110 _cell.length_b 119.110 _cell.length_c 119.110 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X48 _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man CAG38821 6328.236 3 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 water nat water 18.015 22 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'UNCHARACTERIZED PROTEIN 56, ORF55' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MKKEIQVQGVRYYVESEDDLVSVAHELAKMGYTVQQIANALGVSERKVRRYLESC _entity_poly.pdbx_seq_one_letter_code_can MKKEIQVQGVRYYVESEDDLVSVAHELAKMGYTVQQIANALGVSERKVRRYLESC _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 GLU n 1 5 ILE n 1 6 GLN n 1 7 VAL n 1 8 GLN n 1 9 GLY n 1 10 VAL n 1 11 ARG n 1 12 TYR n 1 13 TYR n 1 14 VAL n 1 15 GLU n 1 16 SER n 1 17 GLU n 1 18 ASP n 1 19 ASP n 1 20 LEU n 1 21 VAL n 1 22 SER n 1 23 VAL n 1 24 ALA n 1 25 HIS n 1 26 GLU n 1 27 LEU n 1 28 ALA n 1 29 LYS n 1 30 MET n 1 31 GLY n 1 32 TYR n 1 33 THR n 1 34 VAL n 1 35 GLN n 1 36 GLN n 1 37 ILE n 1 38 ALA n 1 39 ASN n 1 40 ALA n 1 41 LEU n 1 42 GLY n 1 43 VAL n 1 44 SER n 1 45 GLU n 1 46 ARG n 1 47 LYS n 1 48 VAL n 1 49 ARG n 1 50 ARG n 1 51 TYR n 1 52 LEU n 1 53 GLU n 1 54 SER n 1 55 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SULFOLOBUS ISLANDICUS ROD-SHAPED VIRUS 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 157898 _entity_src_gen.pdbx_gene_src_variant XX _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant C43 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PDEST14 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y56_SIRV1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q8QHM9 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2X48 A 1 ? 55 ? Q8QHM9 1 ? 55 ? 1 55 2 1 2X48 B 1 ? 55 ? Q8QHM9 1 ? 55 ? 1 55 3 1 2X48 C 1 ? 55 ? Q8QHM9 1 ? 55 ? 1 55 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2X48 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.75 _exptl_crystal.density_percent_sol 67 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PH 8' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2007-09-01 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DIAMOND (111), GE(220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2X48 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 84.22 _reflns.d_resolution_high 2.60 _reflns.number_obs 8384 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 36.00 _reflns.B_iso_Wilson_estimate 0 _reflns.pdbx_redundancy 15.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.67 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.49 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.00 _reflns_shell.pdbx_redundancy 13.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2X48 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8384 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 84.22 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 99.80 _refine.ls_R_factor_obs 0.22528 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22316 _refine.ls_R_factor_R_free 0.26657 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 419 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.B_iso_mean 3.091 _refine.aniso_B[1][1] 0 _refine.aniso_B[2][2] 0 _refine.aniso_B[3][3] 0 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][3] 0 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.396 _refine.pdbx_overall_ESU_R_Free 0.282 _refine.overall_SU_ML 0.247 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 25.848 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1305 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 1332 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 84.22 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1339 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 924 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.997 1.971 ? 1797 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.792 3.000 ? 2253 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.428 5.000 ? 165 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.288 24.091 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.083 15.000 ? 270 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.605 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.057 0.200 ? 201 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1464 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 264 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.224 1.500 ? 807 'X-RAY DIFFRACTION' ? r_mcbond_other 0.043 1.500 ? 333 'X-RAY DIFFRACTION' ? r_mcangle_it 0.449 2.000 ? 1299 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.837 3.000 ? 532 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.543 4.500 ? 495 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 2 A 70 0.41 5.00 'loose positional' 1 1 'X-RAY DIFFRACTION' ? ? ? 1 B 70 0.22 5.00 'loose positional' 1 2 'X-RAY DIFFRACTION' ? ? ? 3 C 70 0.44 5.00 'loose positional' 1 3 'X-RAY DIFFRACTION' ? ? ? 2 A 138 0.43 5.00 'loose positional' 2 4 'X-RAY DIFFRACTION' ? ? ? 1 B 138 0.34 5.00 'loose positional' 2 5 'X-RAY DIFFRACTION' ? ? ? 3 C 138 0.48 5.00 'loose positional' 2 6 'X-RAY DIFFRACTION' ? ? ? 2 A 206 0.28 5.00 'loose positional' 3 7 'X-RAY DIFFRACTION' ? ? ? 1 B 206 0.31 5.00 'loose positional' 3 8 'X-RAY DIFFRACTION' ? ? ? 3 C 206 0.39 5.00 'loose positional' 3 9 'X-RAY DIFFRACTION' ? ? ? 3 A 210 0.87 5.00 'loose positional' 4 10 'X-RAY DIFFRACTION' ? ? ? 1 B 210 0.88 5.00 'loose positional' 4 11 'X-RAY DIFFRACTION' ? ? ? 2 C 210 1.04 5.00 'loose positional' 4 12 'X-RAY DIFFRACTION' ? ? ? 2 A 70 1.41 10.00 'loose thermal' 1 13 'X-RAY DIFFRACTION' ? ? ? 1 B 70 0.75 10.00 'loose thermal' 1 14 'X-RAY DIFFRACTION' ? ? ? 3 C 70 0.73 10.00 'loose thermal' 1 15 'X-RAY DIFFRACTION' ? ? ? 2 A 138 0.63 10.00 'loose thermal' 2 16 'X-RAY DIFFRACTION' ? ? ? 1 B 138 0.37 10.00 'loose thermal' 2 17 'X-RAY DIFFRACTION' ? ? ? 3 C 138 0.90 10.00 'loose thermal' 2 18 'X-RAY DIFFRACTION' ? ? ? 2 A 206 1.11 10.00 'loose thermal' 3 19 'X-RAY DIFFRACTION' ? ? ? 1 B 206 0.82 10.00 'loose thermal' 3 20 'X-RAY DIFFRACTION' ? ? ? 3 C 206 1.44 10.00 'loose thermal' 3 21 'X-RAY DIFFRACTION' ? ? ? 3 A 210 1.37 10.00 'loose thermal' 4 22 'X-RAY DIFFRACTION' ? ? ? 1 B 210 0.77 10.00 'loose thermal' 4 23 'X-RAY DIFFRACTION' ? ? ? 2 C 210 0.90 10.00 'loose thermal' 4 24 'X-RAY DIFFRACTION' ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.599 _refine_ls_shell.d_res_low 2.667 _refine_ls_shell.number_reflns_R_work 597 _refine_ls_shell.R_factor_R_work 0.294 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.366 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 B 1 2 A 1 3 C 1 1 B 2 2 A 2 3 C 2 1 B 3 2 A 3 3 C 3 1 B 4 2 C 4 3 A 4 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 B 5 B 10 1 6 ? ? ? ? ? ? ? ? 1 ? 2 A 5 A 10 1 6 ? ? ? ? ? ? ? ? 1 ? 3 C 5 C 10 1 6 ? ? ? ? ? ? ? ? 1 ? 1 B 11 B 19 1 6 ? ? ? ? ? ? ? ? 2 ? 2 A 11 A 19 1 6 ? ? ? ? ? ? ? ? 2 ? 3 C 11 C 19 1 6 ? ? ? ? ? ? ? ? 2 ? 1 B 20 B 35 1 6 ? ? ? ? ? ? ? ? 3 ? 2 A 20 A 35 1 6 ? ? ? ? ? ? ? ? 3 ? 3 C 20 C 35 1 6 ? ? ? ? ? ? ? ? 3 ? 1 B 36 B 50 1 6 ? ? ? ? ? ? ? ? 4 ? 2 C 36 C 50 1 6 ? ? ? ? ? ? ? ? 4 ? 3 A 36 A 50 1 6 ? ? ? ? ? ? ? ? 4 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? 4 ? # _struct.entry_id 2X48 _struct.title 'ORF 55 from Sulfolobus islandicus rudivirus 1' _struct.pdbx_descriptor CAG38821 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2X48 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'ARCHEAL VIRUS, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 16 ? MET A 30 ? SER A 16 MET A 30 1 ? 15 HELX_P HELX_P2 2 THR A 33 ? GLY A 42 ? THR A 33 GLY A 42 1 ? 10 HELX_P HELX_P3 3 SER A 44 ? GLU A 53 ? SER A 44 GLU A 53 1 ? 10 HELX_P HELX_P4 4 SER B 16 ? MET B 30 ? SER B 16 MET B 30 1 ? 15 HELX_P HELX_P5 5 THR B 33 ? GLY B 42 ? THR B 33 GLY B 42 1 ? 10 HELX_P HELX_P6 6 SER B 44 ? GLU B 53 ? SER B 44 GLU B 53 1 ? 10 HELX_P HELX_P7 7 SER C 16 ? MET C 30 ? SER C 16 MET C 30 1 ? 15 HELX_P HELX_P8 8 THR C 33 ? GLY C 42 ? THR C 33 GLY C 42 1 ? 10 HELX_P HELX_P9 9 SER C 44 ? SER C 54 ? SER C 44 SER C 54 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 3 ? VAL A 7 ? LYS A 3 VAL A 7 AA 2 VAL A 10 ? VAL A 14 ? VAL A 10 VAL A 14 AA 3 LYS B 3 ? VAL B 7 ? LYS B 3 VAL B 7 AA 4 VAL B 10 ? VAL B 14 ? VAL B 10 VAL B 14 AA 5 LYS C 3 ? VAL C 7 ? LYS C 3 VAL C 7 AA 6 VAL C 10 ? VAL C 14 ? VAL C 10 VAL C 14 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 7 ? N VAL A 7 O VAL A 10 ? O VAL A 10 AA 2 3 N ARG A 11 ? N ARG A 11 O GLU B 4 ? O GLU B 4 AA 3 4 N VAL B 7 ? N VAL B 7 O VAL B 10 ? O VAL B 10 AA 4 5 N ARG B 11 ? N ARG B 11 O GLU C 4 ? O GLU C 4 AA 5 6 N VAL C 7 ? N VAL C 7 O VAL C 10 ? O VAL C 10 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE PO4 A 1055' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG A 11 ? ARG A 11 . ? 1_555 ? 2 AC1 4 ARG B 11 ? ARG B 11 . ? 1_555 ? 3 AC1 4 ARG C 11 ? ARG C 11 . ? 1_555 ? 4 AC1 4 ARG C 11 ? ARG C 11 . ? 2_555 ? # _database_PDB_matrix.entry_id 2X48 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2X48 _atom_sites.fract_transf_matrix[1][1] 0.008396 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008396 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008396 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 CYS 55 55 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 GLU 4 4 4 GLU GLU B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 GLN 6 6 6 GLN GLN B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 GLN 8 8 8 GLN GLN B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 ARG 11 11 11 ARG ARG B . n B 1 12 TYR 12 12 12 TYR TYR B . n B 1 13 TYR 13 13 13 TYR TYR B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 GLU 15 15 15 GLU GLU B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 GLU 17 17 17 GLU GLU B . n B 1 18 ASP 18 18 18 ASP ASP B . n B 1 19 ASP 19 19 19 ASP ASP B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 VAL 23 23 23 VAL VAL B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 HIS 25 25 25 HIS HIS B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 MET 30 30 30 MET MET B . n B 1 31 GLY 31 31 31 GLY GLY B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 GLN 35 35 35 GLN GLN B . n B 1 36 GLN 36 36 36 GLN GLN B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 ASN 39 39 39 ASN ASN B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 LEU 41 41 41 LEU LEU B . n B 1 42 GLY 42 42 42 GLY GLY B . n B 1 43 VAL 43 43 43 VAL VAL B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 LYS 47 47 47 LYS LYS B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 ARG 49 49 49 ARG ARG B . n B 1 50 ARG 50 50 50 ARG ARG B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 GLU 53 53 53 GLU GLU B . n B 1 54 SER 54 54 54 SER SER B . n B 1 55 CYS 55 55 ? ? ? B . n C 1 1 MET 1 1 1 MET MET C . n C 1 2 LYS 2 2 2 LYS LYS C . n C 1 3 LYS 3 3 3 LYS LYS C . n C 1 4 GLU 4 4 4 GLU GLU C . n C 1 5 ILE 5 5 5 ILE ILE C . n C 1 6 GLN 6 6 6 GLN GLN C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 GLN 8 8 8 GLN GLN C . n C 1 9 GLY 9 9 9 GLY GLY C . n C 1 10 VAL 10 10 10 VAL VAL C . n C 1 11 ARG 11 11 11 ARG ARG C . n C 1 12 TYR 12 12 12 TYR TYR C . n C 1 13 TYR 13 13 13 TYR TYR C . n C 1 14 VAL 14 14 14 VAL VAL C . n C 1 15 GLU 15 15 15 GLU GLU C . n C 1 16 SER 16 16 16 SER SER C . n C 1 17 GLU 17 17 17 GLU GLU C . n C 1 18 ASP 18 18 18 ASP ASP C . n C 1 19 ASP 19 19 19 ASP ASP C . n C 1 20 LEU 20 20 20 LEU LEU C . n C 1 21 VAL 21 21 21 VAL VAL C . n C 1 22 SER 22 22 22 SER SER C . n C 1 23 VAL 23 23 23 VAL VAL C . n C 1 24 ALA 24 24 24 ALA ALA C . n C 1 25 HIS 25 25 25 HIS HIS C . n C 1 26 GLU 26 26 26 GLU GLU C . n C 1 27 LEU 27 27 27 LEU LEU C . n C 1 28 ALA 28 28 28 ALA ALA C . n C 1 29 LYS 29 29 29 LYS LYS C . n C 1 30 MET 30 30 30 MET MET C . n C 1 31 GLY 31 31 31 GLY GLY C . n C 1 32 TYR 32 32 32 TYR TYR C . n C 1 33 THR 33 33 33 THR THR C . n C 1 34 VAL 34 34 34 VAL VAL C . n C 1 35 GLN 35 35 35 GLN GLN C . n C 1 36 GLN 36 36 36 GLN GLN C . n C 1 37 ILE 37 37 37 ILE ILE C . n C 1 38 ALA 38 38 38 ALA ALA C . n C 1 39 ASN 39 39 39 ASN ASN C . n C 1 40 ALA 40 40 40 ALA ALA C . n C 1 41 LEU 41 41 41 LEU LEU C . n C 1 42 GLY 42 42 42 GLY GLY C . n C 1 43 VAL 43 43 43 VAL VAL C . n C 1 44 SER 44 44 44 SER SER C . n C 1 45 GLU 45 45 45 GLU GLU C . n C 1 46 ARG 46 46 46 ARG ARG C . n C 1 47 LYS 47 47 47 LYS LYS C . n C 1 48 VAL 48 48 48 VAL VAL C . n C 1 49 ARG 49 49 49 ARG ARG C . n C 1 50 ARG 50 50 50 ARG ARG C . n C 1 51 TYR 51 51 51 TYR TYR C . n C 1 52 LEU 52 52 52 LEU LEU C . n C 1 53 GLU 53 53 53 GLU GLU C . n C 1 54 SER 54 54 54 SER SER C . n C 1 55 CYS 55 55 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 1 1055 1055 PO4 PO4 A . E 3 HOH 1 2001 2001 HOH HOH A . E 3 HOH 2 2002 2002 HOH HOH A . E 3 HOH 3 2003 2003 HOH HOH A . E 3 HOH 4 2004 2004 HOH HOH A . E 3 HOH 5 2005 2005 HOH HOH A . E 3 HOH 6 2006 2006 HOH HOH A . E 3 HOH 7 2007 2007 HOH HOH A . E 3 HOH 8 2008 2008 HOH HOH A . E 3 HOH 9 2009 2009 HOH HOH A . E 3 HOH 10 2010 2010 HOH HOH A . E 3 HOH 11 2011 2011 HOH HOH A . F 3 HOH 1 2001 2001 HOH HOH B . F 3 HOH 2 2002 2002 HOH HOH B . F 3 HOH 3 2003 2003 HOH HOH B . F 3 HOH 4 2004 2004 HOH HOH B . G 3 HOH 1 2001 2001 HOH HOH C . G 3 HOH 2 2002 2002 HOH HOH C . G 3 HOH 3 2003 2003 HOH HOH C . G 3 HOH 4 2004 2004 HOH HOH C . G 3 HOH 5 2005 2005 HOH HOH C . G 3 HOH 6 2006 2006 HOH HOH C . G 3 HOH 7 2007 2007 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA monomeric 1 3 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E 2 1 B,F 3 1 C,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-21 2 'Structure model' 1 1 2011-05-07 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Source and taxonomy' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 2 4 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 3 4 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 4 4 'Structure model' '_entity_src_gen.pdbx_host_org_variant' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -7.8050 -8.1530 47.1020 0.6637 0.1826 0.5826 -0.0387 0.0431 -0.0374 48.3089 32.2342 42.8888 -21.1803 28.6413 -27.2972 -0.1621 0.4497 1.4666 0.2081 -0.2020 -0.4303 -0.8597 0.1389 0.3641 'X-RAY DIFFRACTION' 2 ? refined -8.4440 -10.6410 41.5400 0.7542 0.4151 0.6680 0.0216 -0.0089 -0.0135 37.0398 3.1288 29.1832 1.0212 18.9866 -8.6560 -0.7877 0.8090 1.9874 -0.3920 0.0885 0.1615 -0.7831 0.0412 0.6993 'X-RAY DIFFRACTION' 3 ? refined -10.3850 -20.2720 49.1920 0.3729 0.3451 0.4854 -0.0713 -0.0166 -0.0530 5.3300 10.4947 14.7296 -2.3214 0.1639 -5.4560 0.0131 0.3112 -0.2616 -0.3163 0.0427 -0.0404 0.0427 0.3222 -0.0558 'X-RAY DIFFRACTION' 4 ? refined -19.4430 -19.1040 47.7770 0.3947 0.7929 0.9172 0.0271 -0.0765 -0.0808 13.5687 16.0594 10.5916 5.5038 1.2147 -8.6600 -0.2655 1.0842 0.1869 -0.5383 0.7563 2.0195 0.0296 -1.4027 -0.4908 'X-RAY DIFFRACTION' 5 ? refined 2.7830 -10.4310 46.9480 0.7113 0.5444 0.7000 0.0893 -0.0169 0.1175 14.9396 19.0748 13.0793 1.7917 -4.9275 -0.0505 -0.0116 0.0737 0.7222 -0.0844 0.4094 0.5142 -0.4439 -1.7497 -0.3977 'X-RAY DIFFRACTION' 6 ? refined 4.9660 -12.5900 41.6510 0.4746 0.6271 0.6870 -0.1062 -0.0327 0.0734 6.8770 26.8717 41.2083 0.4532 8.9251 3.9925 -0.3678 0.6844 0.7608 -0.4265 0.1170 0.9687 -0.2631 -1.1748 0.2508 'X-RAY DIFFRACTION' 7 ? refined 12.0850 -19.0640 49.4830 0.4166 0.3150 0.5381 0.0116 0.0263 0.0227 2.2384 10.9505 25.6710 -2.2387 5.9381 -9.1469 0.1735 0.2936 0.0860 -0.2656 0.0195 -0.1588 -0.0124 0.5750 -0.1930 'X-RAY DIFFRACTION' 8 ? refined 5.9340 -25.8710 48.2050 0.5831 0.4489 0.7800 -0.1870 -0.1328 0.1339 14.6345 11.5103 20.5204 -3.1655 1.7744 -0.2133 0.3549 0.4967 -1.7210 -0.6651 0.1670 0.8437 1.6074 -1.5910 -0.5219 'X-RAY DIFFRACTION' 9 ? refined 10.6890 -2.3930 47.2780 0.3838 0.5202 0.7427 -0.0354 0.0983 0.1195 21.8438 36.4106 15.0450 10.1575 13.3966 14.2865 -0.0347 -0.8923 -0.5253 -0.8956 -0.3697 1.0304 -0.4399 -0.6977 0.4043 'X-RAY DIFFRACTION' 10 ? refined 13.2150 -2.0250 41.6620 0.5074 0.3395 0.7071 -0.0280 0.0605 0.0533 18.7939 23.1652 30.0689 -5.2930 -7.5396 14.7527 -0.7117 0.7800 -0.7811 -0.7340 -0.0730 1.3068 0.6816 -0.1193 0.7847 'X-RAY DIFFRACTION' 11 ? refined 22.4640 0.8630 49.2310 0.2296 0.6563 0.7529 -0.0332 0.1122 0.0624 6.9967 9.8466 16.2767 -0.8682 7.3335 5.3548 -0.2772 -0.5062 -0.0484 -0.3891 -0.0592 -0.4589 -0.8357 0.1100 0.3364 'X-RAY DIFFRACTION' 12 ? refined 25.2680 -7.6850 47.5810 0.5932 0.6564 0.9260 0.0331 0.0661 0.0816 24.8071 3.7942 8.3223 -1.8298 0.9210 2.8920 0.0775 0.5178 -0.4955 -0.2191 0.2919 -0.6924 1.0046 0.3591 -0.3694 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 10 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 11 ? ? A 19 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 20 ? ? A 35 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 36 ? ? A 54 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 1 ? ? B 10 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 11 ? ? B 19 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 20 ? ? B 35 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 36 ? ? B 54 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 C 1 ? ? C 10 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 C 11 ? ? C 19 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 C 20 ? ? C 35 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 C 36 ? ? C 54 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 8 ? ? 52.28 -125.34 2 1 GLN B 8 ? ? 56.47 -133.37 3 1 LYS C 2 ? ? 74.47 93.74 4 1 GLN C 8 ? ? 49.93 -109.52 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A CYS 55 ? A CYS 55 2 1 Y 1 B CYS 55 ? B CYS 55 3 1 Y 1 C CYS 55 ? C CYS 55 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #