HEADER PROTEIN TRANSPORT 28-JAN-10 2X4A TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF INVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: INVASION PROTEIN INVA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 357-685; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2; SOURCE 6 ATCC: 700720; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS PROTEIN TRANSPORT, TRANSPORT, PATHOGENESIS EXPDTA X-RAY DIFFRACTION AUTHOR L.J.WORRALL,M.VUCKOVIC,N.C.J.STRYNADKA REVDAT 4 20-DEC-23 2X4A 1 REMARK REVDAT 3 13-JUL-11 2X4A 1 VERSN REVDAT 2 26-MAY-10 2X4A 1 JRNL REVDAT 1 05-MAY-10 2X4A 0 JRNL AUTH L.J.WORRALL,M.VUCKOVIC,N.C.J.STRYNADKA JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE SALMONELLA JRNL TITL 2 TYPE III SECRETION SYSTEM EXPORT APPARATUS PROTEIN INVA. JRNL REF PROTEIN SCI. V. 19 1091 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20306492 JRNL DOI 10.1002/PRO.382 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 14827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 779 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 960 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.4890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.453 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.575 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2712 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1871 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3665 ; 1.812 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4556 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;35.050 ;23.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;18.362 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.766 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2949 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 546 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1637 ; 0.775 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 664 ; 0.165 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2655 ; 1.458 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1075 ; 2.371 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1009 ; 3.735 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 359 A 393 REMARK 3 ORIGIN FOR THE GROUP (A): 50.2950 -13.4890 -2.5640 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.1489 REMARK 3 T33: 0.1693 T12: 0.0203 REMARK 3 T13: 0.0065 T23: 0.0982 REMARK 3 L TENSOR REMARK 3 L11: 5.9406 L22: 1.5549 REMARK 3 L33: 0.9142 L12: 1.6195 REMARK 3 L13: 1.5961 L23: 1.0128 REMARK 3 S TENSOR REMARK 3 S11: 0.1081 S12: 0.4450 S13: 0.3820 REMARK 3 S21: -0.1428 S22: -0.0926 S23: -0.2573 REMARK 3 S31: -0.2093 S32: 0.0490 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 394 A 496 REMARK 3 ORIGIN FOR THE GROUP (A): 55.2400 -19.6910 8.8080 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.1411 REMARK 3 T33: 0.0854 T12: 0.0034 REMARK 3 T13: 0.0124 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.8618 L22: 3.3935 REMARK 3 L33: 1.6414 L12: -2.3297 REMARK 3 L13: 0.9316 L23: -1.4000 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: -0.0236 S13: 0.0334 REMARK 3 S21: 0.1313 S22: -0.0051 S23: -0.0818 REMARK 3 S31: -0.0614 S32: 0.0960 S33: 0.0486 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 497 A 571 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1040 -15.5140 5.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.1233 T22: 0.1533 REMARK 3 T33: 0.1292 T12: -0.0185 REMARK 3 T13: -0.0066 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 5.7109 L22: 2.4107 REMARK 3 L33: 4.0496 L12: 0.4995 REMARK 3 L13: 3.3560 L23: -0.1101 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: 0.1611 S13: 0.2954 REMARK 3 S21: -0.1769 S22: 0.0090 S23: 0.3940 REMARK 3 S31: -0.1886 S32: -0.3788 S33: 0.0975 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 572 A 631 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9110 -21.8620 25.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.1331 REMARK 3 T33: 0.1322 T12: -0.0067 REMARK 3 T13: -0.0127 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 3.1572 L22: 3.6710 REMARK 3 L33: 4.9355 L12: 0.5718 REMARK 3 L13: 1.6347 L23: 0.0447 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: -0.0887 S13: 0.0692 REMARK 3 S21: -0.2599 S22: -0.0342 S23: 0.4035 REMARK 3 S31: -0.1511 S32: -0.3815 S33: 0.1085 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 632 A 685 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5160 -24.3960 21.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.0969 REMARK 3 T33: 0.0283 T12: -0.0003 REMARK 3 T13: 0.0170 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 5.6283 L22: 2.9993 REMARK 3 L33: 4.9039 L12: -0.3489 REMARK 3 L13: -0.2473 L23: -1.5123 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: 0.0929 S13: -0.2418 REMARK 3 S21: 0.0347 S22: -0.0773 S23: -0.1088 REMARK 3 S31: 0.2155 S32: 0.1210 S33: 0.0450 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2X4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : CU FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 68.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2X49 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LISO4, 0.1 M CAPS PH 10.5, 1.2 M REMARK 280 NAH2PO4/0.8M K2HPO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.14000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.57000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.57000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 353 REMARK 465 SER A 354 REMARK 465 HIS A 355 REMARK 465 MET A 356 REMARK 465 THR A 357 REMARK 465 GLU A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 359 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 544 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 652 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 434 49.56 -101.57 REMARK 500 SER A 453 31.58 -94.81 REMARK 500 ASN A 545 78.83 -116.49 REMARK 500 ASN A 584 -138.21 51.49 REMARK 500 SER A 609 -66.78 -150.19 REMARK 500 SER A 611 -158.25 -79.18 REMARK 500 SER A 678 59.96 -112.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXS A 1686 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1687 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1688 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X49 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF INVA DBREF 2X4A A 357 685 UNP P0A1I3 INVA_SALTY 357 685 SEQADV 2X4A GLY A 353 UNP P0A1I3 EXPRESSION TAG SEQADV 2X4A SER A 354 UNP P0A1I3 EXPRESSION TAG SEQADV 2X4A HIS A 355 UNP P0A1I3 EXPRESSION TAG SEQADV 2X4A MET A 356 UNP P0A1I3 EXPRESSION TAG SEQRES 1 A 333 GLY SER HIS MET THR GLU THR VAL PRO LEU ILE LEU LEU SEQRES 2 A 333 VAL PRO LYS SER ARG ARG GLU ASP LEU GLU LYS ALA GLN SEQRES 3 A 333 LEU ALA GLU ARG LEU ARG SER GLN PHE PHE ILE ASP TYR SEQRES 4 A 333 GLY VAL ARG LEU PRO GLU VAL LEU LEU ARG ASP GLY GLU SEQRES 5 A 333 GLY LEU ASP ASP ASN SER ILE VAL LEU LEU ILE ASN GLU SEQRES 6 A 333 ILE ARG VAL GLU GLN PHE THR VAL TYR PHE ASP LEU MET SEQRES 7 A 333 ARG VAL VAL ASN TYR SER ASP GLU VAL VAL SER PHE GLY SEQRES 8 A 333 ILE ASN PRO THR ILE HIS GLN GLN GLY SER SER GLN TYR SEQRES 9 A 333 PHE TRP VAL THR HIS GLU GLU GLY GLU LYS LEU ARG GLU SEQRES 10 A 333 LEU GLY TYR VAL LEU ARG ASN ALA LEU ASP GLU LEU TYR SEQRES 11 A 333 HIS CYS LEU ALA VAL THR LEU ALA ARG ASN VAL ASN GLU SEQRES 12 A 333 TYR PHE GLY ILE GLN GLU THR LYS HIS MET LEU ASP GLN SEQRES 13 A 333 LEU GLU ALA LYS PHE PRO ASP LEU LEU LYS GLU VAL LEU SEQRES 14 A 333 ARG HIS ALA THR VAL GLN ARG ILE SER GLU VAL LEU GLN SEQRES 15 A 333 ARG LEU LEU SER GLU ARG VAL SER VAL ARG ASN MET LYS SEQRES 16 A 333 LEU ILE MET GLU ALA LEU ALA LEU TRP ALA PRO ARG GLU SEQRES 17 A 333 LYS ASP VAL ILE ASN LEU VAL GLU HIS ILE ARG GLY ALA SEQRES 18 A 333 MET ALA ARG TYR ILE CYS HIS LYS PHE ALA ASN GLY GLY SEQRES 19 A 333 GLU LEU ARG ALA VAL MET VAL SER ALA GLU VAL GLU ASP SEQRES 20 A 333 VAL ILE ARG LYS GLY ILE ARG GLN THR SER GLY SER THR SEQRES 21 A 333 PHE LEU SER LEU ASP PRO GLU ALA SER ALA ASN LEU MET SEQRES 22 A 333 ASP LEU ILE THR LEU LYS LEU ASP ASP LEU LEU ILE ALA SEQRES 23 A 333 HIS LYS ASP LEU VAL LEU LEU THR SER VAL ASP VAL ARG SEQRES 24 A 333 ARG PHE ILE LYS LYS MET ILE GLU GLY ARG PHE PRO ASP SEQRES 25 A 333 LEU GLU VAL LEU SER PHE GLY GLU ILE ALA ASP SER LYS SEQRES 26 A 333 SER VAL ASN VAL ILE LYS THR ILE HET CXS A1686 14 HET PO4 A1687 5 HET PO4 A1688 5 HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 2 CXS C9 H19 N O3 S FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *78(H2 O) HELIX 1 1 PRO A 367 SER A 369 5 3 HELIX 2 2 ARG A 370 GLN A 378 1 9 HELIX 3 3 GLN A 378 GLY A 392 1 15 HELIX 4 4 SER A 436 GLY A 443 5 8 HELIX 5 5 THR A 460 GLU A 469 1 10 HELIX 6 6 ALA A 477 ASN A 492 1 16 HELIX 7 7 VAL A 493 TYR A 496 5 4 HELIX 8 8 GLY A 498 ALA A 511 1 14 HELIX 9 9 PHE A 513 ALA A 524 1 12 HELIX 10 10 THR A 525 GLU A 539 1 15 HELIX 11 11 ASN A 545 ALA A 557 1 13 HELIX 12 12 ASP A 562 MET A 574 1 13 HELIX 13 13 MET A 574 ASN A 584 1 11 HELIX 14 14 SER A 594 GLY A 604 1 11 HELIX 15 15 ASP A 617 ASP A 634 1 18 HELIX 16 16 ALA A 638 ASP A 641 5 4 HELIX 17 17 SER A 647 ASP A 649 5 3 HELIX 18 18 VAL A 650 GLY A 660 1 11 SHEET 1 AA 4 VAL A 398 ASP A 402 0 SHEET 2 AA 4 LEU A 362 VAL A 366 1 O LEU A 362 N LEU A 399 SHEET 3 AA 4 SER A 410 ILE A 415 -1 O VAL A 412 N LEU A 365 SHEET 4 AA 4 ILE A 418 THR A 424 -1 O ILE A 418 N ILE A 415 SHEET 1 AB 4 THR A 447 GLN A 451 0 SHEET 2 AB 4 SER A 454 VAL A 459 -1 O SER A 454 N GLN A 451 SHEET 3 AB 4 MET A 430 VAL A 432 -1 O MET A 430 N VAL A 459 SHEET 4 AB 4 LEU A 474 ASN A 476 -1 O ARG A 475 N ARG A 431 SHEET 1 AC 4 GLU A 666 SER A 669 0 SHEET 2 AC 4 VAL A 643 THR A 646 1 O LEU A 644 N LEU A 668 SHEET 3 AC 4 LEU A 588 MET A 592 1 O ARG A 589 N VAL A 643 SHEET 4 AC 4 VAL A 679 THR A 684 1 O ASN A 680 N ALA A 590 SHEET 1 AD 2 ILE A 605 GLN A 607 0 SHEET 2 AD 2 THR A 612 LEU A 614 -1 O PHE A 613 N ARG A 606 SITE 1 AC1 5 ASP A 479 HIS A 483 ASN A 584 GLU A 596 SITE 2 AC1 5 HOH A2077 SITE 1 AC2 5 TYR A 391 HIS A 483 ARG A 540 LYS A 581 SITE 2 AC2 5 HOH A2078 SITE 1 AC3 3 ARG A 535 ARG A 652 LYS A 656 CRYST1 79.170 79.170 127.710 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012631 0.007293 0.000000 0.00000 SCALE2 0.000000 0.014585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007830 0.00000