data_2X4J # _entry.id 2X4J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2X4J PDBE EBI-42718 WWPDB D_1290042718 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2X4J _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-02-01 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Oke, M.' 1 'Carter, L.G.' 2 'Johnson, K.A.' 3 'Liu, H.' 4 'Mcmahon, S.A.' 5 'White, M.F.' 6 'Naismith, J.H.' 7 # _citation.id primary _citation.title 'The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.' _citation.journal_abbrev J.Struct.Funct.Genomics _citation.journal_volume 11 _citation.page_first 167 _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1345-711X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20419351 _citation.pdbx_database_id_DOI 10.1007/S10969-010-9090-Y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Oke, M.' 1 primary 'Carter, L.G.' 2 primary 'Johnson, K.A.' 3 primary 'Liu, H.' 4 primary 'Mcmahon, S.A.' 5 primary 'Yan, X.' 6 primary 'Kerou, M.' 7 primary 'Weikart, N.D.' 8 primary 'Kadi, N.' 9 primary 'Sheikh, M.A.' 10 primary 'Schmelz, S.' 11 primary 'Dorward, M.' 12 primary 'Zawadzki, M.' 13 primary 'Cozens, C.' 14 primary 'Falconer, H.' 15 primary 'Powers, H.' 16 primary 'Overton, I.M.' 17 primary 'Van Niekerk, C.A.J.' 18 primary 'Peng, X.' 19 primary 'Patel, P.' 20 primary 'Garrett, R.A.' 21 primary 'Prangishvili, D.' 22 primary 'Botting, C.H.' 23 primary 'Coote, P.J.' 24 primary 'Dryden, D.T.F.' 25 primary 'Barton, G.J.' 26 primary 'Schwarz-Linek, U.' 27 primary 'Challis, G.L.' 28 primary 'Taylor, G.L.' 29 primary 'White, M.F.' 30 primary 'Naismith, J.H.' 31 # _cell.entry_id 2X4J _cell.length_a 89.770 _cell.length_b 89.770 _cell.length_c 36.380 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X4J _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HYPOTHETICAL PROTEIN ORF137' 14967.177 1 ? ? ? ? 2 water nat water 18.015 44 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMGAPNQQQTQDRSVDFFTNKIGCNVSSPLKHVDIVGEIVEEAVYNFLIDAGDKMCVGNKIGVWKVSKCEGSSGSGGERR KSLYAKVPKGIGVTVYLANGRVQGRLIDIGVYEVLVEEVGDIIYIHKDLVYALCWPK ; _entity_poly.pdbx_seq_one_letter_code_can ;GMGAPNQQQTQDRSVDFFTNKIGCNVSSPLKHVDIVGEIVEEAVYNFLIDAGDKMCVGNKIGVWKVSKCEGSSGSGGERR KSLYAKVPKGIGVTVYLANGRVQGRLIDIGVYEVLVEEVGDIIYIHKDLVYALCWPK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 GLY n 1 4 ALA n 1 5 PRO n 1 6 ASN n 1 7 GLN n 1 8 GLN n 1 9 GLN n 1 10 THR n 1 11 GLN n 1 12 ASP n 1 13 ARG n 1 14 SER n 1 15 VAL n 1 16 ASP n 1 17 PHE n 1 18 PHE n 1 19 THR n 1 20 ASN n 1 21 LYS n 1 22 ILE n 1 23 GLY n 1 24 CYS n 1 25 ASN n 1 26 VAL n 1 27 SER n 1 28 SER n 1 29 PRO n 1 30 LEU n 1 31 LYS n 1 32 HIS n 1 33 VAL n 1 34 ASP n 1 35 ILE n 1 36 VAL n 1 37 GLY n 1 38 GLU n 1 39 ILE n 1 40 VAL n 1 41 GLU n 1 42 GLU n 1 43 ALA n 1 44 VAL n 1 45 TYR n 1 46 ASN n 1 47 PHE n 1 48 LEU n 1 49 ILE n 1 50 ASP n 1 51 ALA n 1 52 GLY n 1 53 ASP n 1 54 LYS n 1 55 MET n 1 56 CYS n 1 57 VAL n 1 58 GLY n 1 59 ASN n 1 60 LYS n 1 61 ILE n 1 62 GLY n 1 63 VAL n 1 64 TRP n 1 65 LYS n 1 66 VAL n 1 67 SER n 1 68 LYS n 1 69 CYS n 1 70 GLU n 1 71 GLY n 1 72 SER n 1 73 SER n 1 74 GLY n 1 75 SER n 1 76 GLY n 1 77 GLY n 1 78 GLU n 1 79 ARG n 1 80 ARG n 1 81 LYS n 1 82 SER n 1 83 LEU n 1 84 TYR n 1 85 ALA n 1 86 LYS n 1 87 VAL n 1 88 PRO n 1 89 LYS n 1 90 GLY n 1 91 ILE n 1 92 GLY n 1 93 VAL n 1 94 THR n 1 95 VAL n 1 96 TYR n 1 97 LEU n 1 98 ALA n 1 99 ASN n 1 100 GLY n 1 101 ARG n 1 102 VAL n 1 103 GLN n 1 104 GLY n 1 105 ARG n 1 106 LEU n 1 107 ILE n 1 108 ASP n 1 109 ILE n 1 110 GLY n 1 111 VAL n 1 112 TYR n 1 113 GLU n 1 114 VAL n 1 115 LEU n 1 116 VAL n 1 117 GLU n 1 118 GLU n 1 119 VAL n 1 120 GLY n 1 121 ASP n 1 122 ILE n 1 123 ILE n 1 124 TYR n 1 125 ILE n 1 126 HIS n 1 127 LYS n 1 128 ASP n 1 129 LEU n 1 130 VAL n 1 131 TYR n 1 132 ALA n 1 133 LEU n 1 134 CYS n 1 135 TRP n 1 136 PRO n 1 137 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PYROBACULUM SPHERICAL VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 270161 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PDEST14 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6ZYJ4_PSV _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q6ZYJ4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2X4J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 137 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6ZYJ4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 136 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 136 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2X4J GLY A 1 ? UNP Q6ZYJ4 ? ? 'expression tag' 0 1 1 2X4J GLU A 117 ? UNP Q6ZYJ4 ? ? insertion 116 2 1 2X4J ? A ? ? UNP Q6ZYJ4 GLY 119 deletion ? 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2X4J _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_percent_sol 34.9 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '23% PEG3350, 0.37M MA-SCN, 0.23M MGCL2, 0.1M MES, PH 7.0. CRYSTAL CRYOPROTECTED WITH 40% PEG400' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2008-02-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.6 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength 0.6 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2X4J _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.90 _reflns.d_resolution_high 1.62 _reflns.number_obs 22381 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.62 _reflns_shell.d_res_low 1.74 _reflns_shell.percent_possible_all 90.1 _reflns_shell.Rmerge_I_obs 0.57 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 9.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2X4J _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12476 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.90 _refine.ls_d_res_high 1.62 _refine.ls_percent_reflns_obs 94.49 _refine.ls_R_factor_obs 0.16964 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16791 _refine.ls_R_factor_R_free 0.20241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 665 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 13.001 _refine.aniso_B[1][1] -0.29 _refine.aniso_B[2][2] -0.29 _refine.aniso_B[3][3] 0.43 _refine.aniso_B[1][2] -0.14 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.127 _refine.pdbx_overall_ESU_R_Free 0.091 _refine.overall_SU_ML 0.061 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.902 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 853 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 897 _refine_hist.d_res_high 1.62 _refine_hist.d_res_low 44.90 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.025 0.022 ? 870 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.158 1.965 ? 1178 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.731 5.000 ? 107 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 26.209 24.412 ? 34 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.656 15.000 ? 154 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.257 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.150 0.200 ? 136 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.021 ? 632 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.127 1.500 ? 536 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.095 2.000 ? 869 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 4.759 3.000 ? 334 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.837 4.500 ? 309 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.767 3.000 ? 870 'X-RAY DIFFRACTION' ? r_sphericity_free 10.352 3.000 ? 44 'X-RAY DIFFRACTION' ? r_sphericity_bonded 4.347 3.000 ? 853 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.620 _refine_ls_shell.d_res_low 1.662 _refine_ls_shell.number_reflns_R_work 701 _refine_ls_shell.R_factor_R_work 0.300 _refine_ls_shell.percent_reflns_obs 70.05 _refine_ls_shell.R_factor_R_free 0.408 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2X4J _struct.title 'Crystal structure of ORF137 from Pyrobaculum spherical virus' _struct.pdbx_descriptor 'HYPOTHETICAL PROTEIN ORF137' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2X4J _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 83 ? VAL A 87 ? LEU A 82 VAL A 86 5 ? 5 HELX_P HELX_P2 2 ASP A 128 ? VAL A 130 ? ASP A 127 VAL A 129 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 56 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 134 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 133 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.092 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel AA 8 9 ? anti-parallel AA 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 65 ? SER A 67 ? LYS A 64 SER A 66 AA 2 ASN A 25 ? SER A 27 ? ASN A 24 SER A 26 AA 3 VAL A 36 ? GLU A 42 ? VAL A 35 GLU A 41 AA 4 ASN A 46 ? ASP A 50 ? ASN A 45 ASP A 49 AA 5 LYS A 54 ? ASN A 59 ? LYS A 53 ASN A 58 AA 6 ALA A 132 ? PRO A 136 ? ALA A 131 PRO A 135 AA 7 GLY A 92 ? LEU A 97 ? GLY A 91 LEU A 96 AA 8 GLY A 100 ? ILE A 109 ? GLY A 99 ILE A 108 AA 9 GLU A 113 ? GLU A 118 ? GLU A 112 GLU A 117 AA 10 ASP A 121 ? HIS A 126 ? ASP A 120 HIS A 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 67 ? N SER A 66 O ASN A 25 ? O ASN A 24 AA 2 3 N VAL A 26 ? N VAL A 25 O GLY A 37 ? O GLY A 36 AA 3 4 N VAL A 40 ? N VAL A 39 O LEU A 48 ? O LEU A 47 AA 4 5 N ILE A 49 ? N ILE A 48 O CYS A 56 ? O CYS A 55 AA 5 6 N VAL A 57 ? N VAL A 56 O LEU A 133 ? O LEU A 132 AA 6 7 N CYS A 134 ? N CYS A 133 O THR A 94 ? O THR A 93 AA 7 8 N LEU A 97 ? N LEU A 96 O GLY A 100 ? O GLY A 99 AA 8 9 N ILE A 107 ? N ILE A 106 O LEU A 115 ? O LEU A 114 AA 9 10 N GLU A 118 ? N GLU A 117 O ASP A 121 ? O ASP A 120 # _database_PDB_matrix.entry_id 2X4J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2X4J _atom_sites.fract_transf_matrix[1][1] 0.011140 _atom_sites.fract_transf_matrix[1][2] 0.006431 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012863 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027488 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 GLY 3 2 ? ? ? A . n A 1 4 ALA 4 3 ? ? ? A . n A 1 5 PRO 5 4 ? ? ? A . n A 1 6 ASN 6 5 ? ? ? A . n A 1 7 GLN 7 6 ? ? ? A . n A 1 8 GLN 8 7 ? ? ? A . n A 1 9 GLN 9 8 ? ? ? A . n A 1 10 THR 10 9 ? ? ? A . n A 1 11 GLN 11 10 ? ? ? A . n A 1 12 ASP 12 11 ? ? ? A . n A 1 13 ARG 13 12 ? ? ? A . n A 1 14 SER 14 13 ? ? ? A . n A 1 15 VAL 15 14 ? ? ? A . n A 1 16 ASP 16 15 ? ? ? A . n A 1 17 PHE 17 16 16 PHE PHE A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 LYS 21 20 20 LYS LYS A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 CYS 24 23 23 CYS CYS A . n A 1 25 ASN 25 24 24 ASN ASN A . n A 1 26 VAL 26 25 25 VAL VAL A . n A 1 27 SER 27 26 26 SER SER A . n A 1 28 SER 28 27 27 SER SER A . n A 1 29 PRO 29 28 28 PRO PRO A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 LYS 31 30 30 LYS LYS A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 VAL 33 32 32 VAL VAL A . n A 1 34 ASP 34 33 33 ASP ASP A . n A 1 35 ILE 35 34 34 ILE ILE A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 GLY 37 36 36 GLY GLY A . n A 1 38 GLU 38 37 37 GLU GLU A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 VAL 40 39 39 VAL VAL A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 TYR 45 44 44 TYR TYR A . n A 1 46 ASN 46 45 45 ASN ASN A . n A 1 47 PHE 47 46 46 PHE PHE A . n A 1 48 LEU 48 47 47 LEU LEU A . n A 1 49 ILE 49 48 48 ILE ILE A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 LYS 54 53 53 LYS LYS A . n A 1 55 MET 55 54 54 MET MET A . n A 1 56 CYS 56 55 55 CYS CYS A . n A 1 57 VAL 57 56 56 VAL VAL A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 ASN 59 58 58 ASN ASN A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 ILE 61 60 60 ILE ILE A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 TRP 64 63 63 TRP TRP A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 VAL 66 65 65 VAL VAL A . n A 1 67 SER 67 66 66 SER SER A . n A 1 68 LYS 68 67 ? ? ? A . n A 1 69 CYS 69 68 ? ? ? A . n A 1 70 GLU 70 69 ? ? ? A . n A 1 71 GLY 71 70 ? ? ? A . n A 1 72 SER 72 71 ? ? ? A . n A 1 73 SER 73 72 ? ? ? A . n A 1 74 GLY 74 73 ? ? ? A . n A 1 75 SER 75 74 ? ? ? A . n A 1 76 GLY 76 75 ? ? ? A . n A 1 77 GLY 77 76 ? ? ? A . n A 1 78 GLU 78 77 ? ? ? A . n A 1 79 ARG 79 78 ? ? ? A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 LYS 81 80 80 LYS LYS A . n A 1 82 SER 82 81 81 SER SER A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 TYR 84 83 83 TYR TYR A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 LYS 86 85 85 LYS LYS A . n A 1 87 VAL 87 86 86 VAL VAL A . n A 1 88 PRO 88 87 87 PRO PRO A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 ILE 91 90 90 ILE ILE A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 VAL 93 92 92 VAL VAL A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 TYR 96 95 95 TYR TYR A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 ARG 101 100 100 ARG ARG A . n A 1 102 VAL 102 101 101 VAL VAL A . n A 1 103 GLN 103 102 102 GLN GLN A . n A 1 104 GLY 104 103 103 GLY GLY A . n A 1 105 ARG 105 104 104 ARG ARG A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 ASP 108 107 107 ASP ASP A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 GLY 110 109 109 GLY GLY A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 TYR 112 111 111 TYR TYR A . n A 1 113 GLU 113 112 112 GLU GLU A . n A 1 114 VAL 114 113 113 VAL VAL A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 VAL 116 115 115 VAL VAL A . n A 1 117 GLU 117 116 116 GLU GLU A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 VAL 119 118 118 VAL VAL A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 ILE 122 121 121 ILE ILE A . n A 1 123 ILE 123 122 122 ILE ILE A . n A 1 124 TYR 124 123 123 TYR TYR A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 HIS 126 125 125 HIS HIS A . n A 1 127 LYS 127 126 126 LYS LYS A . n A 1 128 ASP 128 127 127 ASP ASP A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 VAL 130 129 129 VAL VAL A . n A 1 131 TYR 131 130 130 TYR TYR A . n A 1 132 ALA 132 131 131 ALA ALA A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 CYS 134 133 133 CYS CYS A . n A 1 135 TRP 135 134 134 TRP TRP A . n A 1 136 PRO 136 135 135 PRO PRO A . n A 1 137 LYS 137 136 136 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3320 ? 1 MORE -18.3 ? 1 'SSA (A^2)' 14880 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-21 2 'Structure model' 1 1 2011-05-07 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 14.9700 -14.9480 23.5370 0.2696 0.1516 0.2457 0.0311 0.0113 0.0643 15.5570 3.0362 0.1291 0.2052 1.3909 0.0568 0.1105 -0.2322 -0.2811 0.4449 -0.0914 0.2627 0.0425 -0.0065 -0.0191 'X-RAY DIFFRACTION' 2 ? refined 13.3090 -9.4690 9.7080 0.1068 0.1394 0.0887 -0.0303 0.0302 -0.0632 6.9307 6.8454 8.0784 -4.3856 4.1069 -5.4415 -0.1701 0.3989 -0.4801 -0.3322 0.0706 -0.1042 0.1554 -0.2394 0.0995 'X-RAY DIFFRACTION' 3 ? refined 19.0870 -8.2340 15.5300 0.0605 0.0774 0.1189 -0.0221 0.0208 0.0017 4.0391 2.5785 9.9761 -1.6336 1.5657 0.6782 -0.0539 0.1370 -0.2302 0.0164 0.0124 -0.2259 0.3080 0.2852 0.0416 'X-RAY DIFFRACTION' 4 ? refined 14.3860 -4.7070 24.4820 0.1330 0.1324 0.0940 0.0069 0.0069 0.0293 4.7643 1.2147 4.7346 -0.1614 0.5355 2.2530 0.0005 -0.1690 0.0091 0.1661 -0.0716 0.0405 0.2683 -0.1717 0.0712 'X-RAY DIFFRACTION' 5 ? refined 16.1360 -5.8130 15.1760 0.1103 0.1277 0.0919 -0.0003 0.0172 -0.0113 3.5212 0.9024 0.6004 0.0170 -0.5976 0.0777 -0.0675 -0.0071 -0.2115 -0.0638 -0.0007 -0.0473 0.0782 0.0268 0.0682 'X-RAY DIFFRACTION' 6 ? refined 17.5510 -3.2360 24.6740 0.1123 0.1430 0.0789 0.0188 -0.0249 0.0087 3.7787 4.8185 1.7439 1.7246 -0.0870 1.6210 -0.0204 -0.3593 -0.1924 0.4249 0.0200 -0.1901 0.1065 0.1088 0.0004 'X-RAY DIFFRACTION' 7 ? refined 18.1800 5.9800 13.9080 0.1072 0.1218 0.1106 -0.0031 0.0079 -0.0012 4.9417 1.1420 0.9251 1.2666 0.0341 0.5439 0.0967 0.0676 0.3402 0.0416 0.0025 -0.0530 -0.0260 -0.0020 -0.0992 'X-RAY DIFFRACTION' 8 ? refined 12.4720 6.6540 8.7140 0.0847 0.1188 0.0931 0.0251 -0.0092 0.0409 13.3714 11.2463 4.5623 10.3531 1.4466 2.0657 -0.4122 0.6360 0.2625 -0.5374 0.3471 0.1743 -0.1461 -0.0250 0.0651 'X-RAY DIFFRACTION' 9 ? refined 13.2530 10.1600 22.5630 0.1131 0.1819 0.1216 0.0319 -0.0021 -0.0388 7.0963 3.3241 5.5069 3.4590 -3.2271 -3.2279 0.1095 -0.5487 0.4408 0.2853 0.0477 0.0833 -0.2208 0.0285 -0.1572 'X-RAY DIFFRACTION' 10 ? refined 13.9600 16.6470 11.9090 0.1357 0.1196 0.2428 -0.0269 -0.0028 0.0872 12.4344 12.2386 11.8750 -2.1871 -1.7850 -6.5571 0.1451 0.8008 1.1718 -0.7194 -0.1817 -0.2472 -0.0795 0.2374 0.0366 'X-RAY DIFFRACTION' 11 ? refined 7.3030 7.1190 18.3370 0.0897 0.1531 0.1333 0.0288 0.0102 0.0249 0.1791 7.3773 3.7565 -0.2887 -0.5330 -2.3039 -0.0187 -0.0037 0.0101 0.0078 -0.1239 0.0445 0.1065 0.0976 0.1426 'X-RAY DIFFRACTION' 12 ? refined 19.5530 0.5000 13.8120 0.1132 0.1265 0.0877 -0.0075 0.0099 -0.0010 3.4134 2.4260 1.0208 -1.1266 -1.2216 0.4484 0.0073 0.0661 0.1298 -0.0707 0.0710 -0.2986 0.0176 -0.1231 -0.0782 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 16 ? ? A 21 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 22 ? ? A 31 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 32 ? ? A 41 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 42 ? ? A 47 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 48 ? ? A 64 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 65 ? ? A 85 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 86 ? ? A 96 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 97 ? ? A 104 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 105 ? ? A 113 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 114 ? ? A 121 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 A 122 ? ? A 129 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 A 130 ? ? A 136 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0072 ? 1 XDS 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELXCDE phasing 'SOLVE RESOLVE' ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 CG1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 VAL _pdbx_validate_close_contact.auth_seq_id_1 101 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 117 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 98 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 ND2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ASN _pdbx_validate_symm_contact.auth_seq_id_2 98 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.02 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 LYS _pdbx_validate_rmsd_bond.auth_seq_id_1 59 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 LYS _pdbx_validate_rmsd_bond.auth_seq_id_2 59 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.674 _pdbx_validate_rmsd_bond.bond_target_value 1.508 _pdbx_validate_rmsd_bond.bond_deviation 0.166 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CD _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LYS _pdbx_validate_rmsd_angle.auth_seq_id_1 59 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CE _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LYS _pdbx_validate_rmsd_angle.auth_seq_id_2 59 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NZ _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LYS _pdbx_validate_rmsd_angle.auth_seq_id_3 59 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 125.65 _pdbx_validate_rmsd_angle.angle_target_value 111.70 _pdbx_validate_rmsd_angle.angle_deviation 13.95 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id VAL _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 118 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 57.09 _pdbx_validate_torsion.psi -140.83 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2010 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.12 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A GLY 2 ? A GLY 3 4 1 Y 1 A ALA 3 ? A ALA 4 5 1 Y 1 A PRO 4 ? A PRO 5 6 1 Y 1 A ASN 5 ? A ASN 6 7 1 Y 1 A GLN 6 ? A GLN 7 8 1 Y 1 A GLN 7 ? A GLN 8 9 1 Y 1 A GLN 8 ? A GLN 9 10 1 Y 1 A THR 9 ? A THR 10 11 1 Y 1 A GLN 10 ? A GLN 11 12 1 Y 1 A ASP 11 ? A ASP 12 13 1 Y 1 A ARG 12 ? A ARG 13 14 1 Y 1 A SER 13 ? A SER 14 15 1 Y 1 A VAL 14 ? A VAL 15 16 1 Y 1 A ASP 15 ? A ASP 16 17 1 Y 1 A LYS 67 ? A LYS 68 18 1 Y 1 A CYS 68 ? A CYS 69 19 1 Y 1 A GLU 69 ? A GLU 70 20 1 Y 1 A GLY 70 ? A GLY 71 21 1 Y 1 A SER 71 ? A SER 72 22 1 Y 1 A SER 72 ? A SER 73 23 1 Y 1 A GLY 73 ? A GLY 74 24 1 Y 1 A SER 74 ? A SER 75 25 1 Y 1 A GLY 75 ? A GLY 76 26 1 Y 1 A GLY 76 ? A GLY 77 27 1 Y 1 A GLU 77 ? A GLU 78 28 1 Y 1 A ARG 78 ? A ARG 79 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #