HEADER VIRAL PROTEIN 01-FEB-10 2X4J TITLE CRYSTAL STRUCTURE OF ORF137 FROM PYROBACULUM SPHERICAL VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN ORF137; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM SPHERICAL VIRUS; SOURCE 3 ORGANISM_TAXID: 270161; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,M.F.WHITE,J.H.NAISMITH REVDAT 2 16-OCT-24 2X4J 1 REMARK REVDAT 1 21-JUL-10 2X4J 0 JRNL AUTH M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,X.YAN, JRNL AUTH 2 M.KEROU,N.D.WEIKART,N.KADI,M.A.SHEIKH,S.SCHMELZ,M.DORWARD, JRNL AUTH 3 M.ZAWADZKI,C.COZENS,H.FALCONER,H.POWERS,I.M.OVERTON, JRNL AUTH 4 C.A.J.VAN NIEKERK,X.PENG,P.PATEL,R.A.GARRETT,D.PRANGISHVILI, JRNL AUTH 5 C.H.BOTTING,P.J.COOTE,D.T.F.DRYDEN,G.J.BARTON, JRNL AUTH 6 U.SCHWARZ-LINEK,G.L.CHALLIS,G.L.TAYLOR,M.F.WHITE, JRNL AUTH 7 J.H.NAISMITH JRNL TITL THE SCOTTISH STRUCTURAL PROTEOMICS FACILITY: TARGETS, JRNL TITL 2 METHODS AND OUTPUTS. JRNL REF J.STRUCT.FUNCT.GENOMICS V. 11 167 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20419351 JRNL DOI 10.1007/S10969-010-9090-Y REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 12476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 665 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 701 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.902 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 870 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1178 ; 2.158 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 107 ; 6.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 34 ;26.209 ;24.412 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 154 ;16.656 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;20.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 136 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 632 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 536 ; 2.127 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 869 ; 3.095 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 334 ; 4.759 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 309 ; 6.837 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 870 ; 2.767 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 44 ;10.352 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 853 ; 4.347 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9700 -14.9480 23.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.2696 T22: 0.1516 REMARK 3 T33: 0.2457 T12: 0.0311 REMARK 3 T13: 0.0113 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 15.5570 L22: 3.0362 REMARK 3 L33: 0.1291 L12: 0.2052 REMARK 3 L13: 1.3909 L23: 0.0568 REMARK 3 S TENSOR REMARK 3 S11: 0.1105 S12: -0.2322 S13: -0.2811 REMARK 3 S21: 0.4449 S22: -0.0914 S23: 0.2627 REMARK 3 S31: 0.0425 S32: -0.0065 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3090 -9.4690 9.7080 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.1394 REMARK 3 T33: 0.0887 T12: -0.0303 REMARK 3 T13: 0.0302 T23: -0.0632 REMARK 3 L TENSOR REMARK 3 L11: 6.9307 L22: 6.8454 REMARK 3 L33: 8.0784 L12: -4.3856 REMARK 3 L13: 4.1069 L23: -5.4415 REMARK 3 S TENSOR REMARK 3 S11: -0.1701 S12: 0.3989 S13: -0.4801 REMARK 3 S21: -0.3322 S22: 0.0706 S23: -0.1042 REMARK 3 S31: 0.1554 S32: -0.2394 S33: 0.0995 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0870 -8.2340 15.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0774 REMARK 3 T33: 0.1189 T12: -0.0221 REMARK 3 T13: 0.0208 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 4.0391 L22: 2.5785 REMARK 3 L33: 9.9761 L12: -1.6336 REMARK 3 L13: 1.5657 L23: 0.6782 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: 0.1370 S13: -0.2302 REMARK 3 S21: 0.0164 S22: 0.0124 S23: -0.2259 REMARK 3 S31: 0.3080 S32: 0.2852 S33: 0.0416 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3860 -4.7070 24.4820 REMARK 3 T TENSOR REMARK 3 T11: 0.1330 T22: 0.1324 REMARK 3 T33: 0.0940 T12: 0.0069 REMARK 3 T13: 0.0069 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 4.7643 L22: 1.2147 REMARK 3 L33: 4.7346 L12: -0.1614 REMARK 3 L13: 0.5355 L23: 2.2530 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.1690 S13: 0.0091 REMARK 3 S21: 0.1661 S22: -0.0716 S23: 0.0405 REMARK 3 S31: 0.2683 S32: -0.1717 S33: 0.0712 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1360 -5.8130 15.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.1277 REMARK 3 T33: 0.0919 T12: -0.0003 REMARK 3 T13: 0.0172 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 3.5212 L22: 0.9024 REMARK 3 L33: 0.6004 L12: 0.0170 REMARK 3 L13: -0.5976 L23: 0.0777 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: -0.0071 S13: -0.2115 REMARK 3 S21: -0.0638 S22: -0.0007 S23: -0.0473 REMARK 3 S31: 0.0782 S32: 0.0268 S33: 0.0682 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5510 -3.2360 24.6740 REMARK 3 T TENSOR REMARK 3 T11: 0.1123 T22: 0.1430 REMARK 3 T33: 0.0789 T12: 0.0188 REMARK 3 T13: -0.0249 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 3.7787 L22: 4.8185 REMARK 3 L33: 1.7439 L12: 1.7246 REMARK 3 L13: -0.0870 L23: 1.6210 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.3593 S13: -0.1924 REMARK 3 S21: 0.4249 S22: 0.0200 S23: -0.1901 REMARK 3 S31: 0.1065 S32: 0.1088 S33: 0.0004 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1800 5.9800 13.9080 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1218 REMARK 3 T33: 0.1106 T12: -0.0031 REMARK 3 T13: 0.0079 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 4.9417 L22: 1.1420 REMARK 3 L33: 0.9251 L12: 1.2666 REMARK 3 L13: 0.0341 L23: 0.5439 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: 0.0676 S13: 0.3402 REMARK 3 S21: 0.0416 S22: 0.0025 S23: -0.0530 REMARK 3 S31: -0.0260 S32: -0.0020 S33: -0.0992 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4720 6.6540 8.7140 REMARK 3 T TENSOR REMARK 3 T11: 0.0847 T22: 0.1188 REMARK 3 T33: 0.0931 T12: 0.0251 REMARK 3 T13: -0.0092 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 13.3714 L22: 11.2463 REMARK 3 L33: 4.5623 L12: 10.3531 REMARK 3 L13: 1.4466 L23: 2.0657 REMARK 3 S TENSOR REMARK 3 S11: -0.4122 S12: 0.6360 S13: 0.2625 REMARK 3 S21: -0.5374 S22: 0.3471 S23: 0.1743 REMARK 3 S31: -0.1461 S32: -0.0250 S33: 0.0651 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2530 10.1600 22.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.1819 REMARK 3 T33: 0.1216 T12: 0.0319 REMARK 3 T13: -0.0021 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 7.0963 L22: 3.3241 REMARK 3 L33: 5.5069 L12: 3.4590 REMARK 3 L13: -3.2271 L23: -3.2279 REMARK 3 S TENSOR REMARK 3 S11: 0.1095 S12: -0.5487 S13: 0.4408 REMARK 3 S21: 0.2853 S22: 0.0477 S23: 0.0833 REMARK 3 S31: -0.2208 S32: 0.0285 S33: -0.1572 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9600 16.6470 11.9090 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.1196 REMARK 3 T33: 0.2428 T12: -0.0269 REMARK 3 T13: -0.0028 T23: 0.0872 REMARK 3 L TENSOR REMARK 3 L11: 12.4344 L22: 12.2386 REMARK 3 L33: 11.8750 L12: -2.1871 REMARK 3 L13: -1.7850 L23: -6.5571 REMARK 3 S TENSOR REMARK 3 S11: 0.1451 S12: 0.8008 S13: 1.1718 REMARK 3 S21: -0.7194 S22: -0.1817 S23: -0.2472 REMARK 3 S31: -0.0795 S32: 0.2374 S33: 0.0366 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3030 7.1190 18.3370 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.1531 REMARK 3 T33: 0.1333 T12: 0.0288 REMARK 3 T13: 0.0102 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.1791 L22: 7.3773 REMARK 3 L33: 3.7565 L12: -0.2887 REMARK 3 L13: -0.5330 L23: -2.3039 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: -0.0037 S13: 0.0101 REMARK 3 S21: 0.0078 S22: -0.1239 S23: 0.0445 REMARK 3 S31: 0.1065 S32: 0.0976 S33: 0.1426 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5530 0.5000 13.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1265 REMARK 3 T33: 0.0877 T12: -0.0075 REMARK 3 T13: 0.0099 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.4134 L22: 2.4260 REMARK 3 L33: 1.0208 L12: -1.1266 REMARK 3 L13: -1.2216 L23: 0.4484 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.0661 S13: 0.1298 REMARK 3 S21: -0.0707 S22: 0.0710 S23: -0.2986 REMARK 3 S31: 0.0176 S32: -0.1231 S33: -0.0782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2X4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22381 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 44.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCDE SOLVE RESOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG3350, 0.37M MA-SCN, 0.23M REMARK 280 MGCL2, 0.1M MES, PH 7.0. CRYSTAL CRYOPROTECTED WITH 40% PEG400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.88500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.91437 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.12667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 44.88500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 25.91437 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.12667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 44.88500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 25.91437 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.12667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.82873 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.25333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.82873 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.25333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.82873 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.25333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 ASN A 5 REMARK 465 GLN A 6 REMARK 465 GLN A 7 REMARK 465 GLN A 8 REMARK 465 THR A 9 REMARK 465 GLN A 10 REMARK 465 ASP A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 ASP A 15 REMARK 465 LYS A 67 REMARK 465 CYS A 68 REMARK 465 GLU A 69 REMARK 465 GLY A 70 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 GLU A 77 REMARK 465 ARG A 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG1 VAL A 101 OE2 GLU A 117 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 98 ND2 ASN A 98 2555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 59 CD LYS A 59 CE 0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 59 CD - CE - NZ ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 118 -140.83 57.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2010 DISTANCE = 6.12 ANGSTROMS DBREF 2X4J A 1 136 UNP Q6ZYJ4 Q6ZYJ4_PSV 1 136 SEQADV 2X4J GLY A 0 UNP Q6ZYJ4 EXPRESSION TAG SEQADV 2X4J GLU A 116 UNP Q6ZYJ4 INSERTION SEQADV 2X4J A UNP Q6ZYJ4 GLY 119 DELETION SEQRES 1 A 137 GLY MET GLY ALA PRO ASN GLN GLN GLN THR GLN ASP ARG SEQRES 2 A 137 SER VAL ASP PHE PHE THR ASN LYS ILE GLY CYS ASN VAL SEQRES 3 A 137 SER SER PRO LEU LYS HIS VAL ASP ILE VAL GLY GLU ILE SEQRES 4 A 137 VAL GLU GLU ALA VAL TYR ASN PHE LEU ILE ASP ALA GLY SEQRES 5 A 137 ASP LYS MET CYS VAL GLY ASN LYS ILE GLY VAL TRP LYS SEQRES 6 A 137 VAL SER LYS CYS GLU GLY SER SER GLY SER GLY GLY GLU SEQRES 7 A 137 ARG ARG LYS SER LEU TYR ALA LYS VAL PRO LYS GLY ILE SEQRES 8 A 137 GLY VAL THR VAL TYR LEU ALA ASN GLY ARG VAL GLN GLY SEQRES 9 A 137 ARG LEU ILE ASP ILE GLY VAL TYR GLU VAL LEU VAL GLU SEQRES 10 A 137 GLU VAL GLY ASP ILE ILE TYR ILE HIS LYS ASP LEU VAL SEQRES 11 A 137 TYR ALA LEU CYS TRP PRO LYS FORMUL 2 HOH *44(H2 O) HELIX 1 1 LEU A 82 VAL A 86 5 5 HELIX 2 2 ASP A 127 VAL A 129 5 3 SHEET 1 AA10 LYS A 64 SER A 66 0 SHEET 2 AA10 ASN A 24 SER A 26 -1 O ASN A 24 N SER A 66 SHEET 3 AA10 VAL A 35 GLU A 41 -1 O GLY A 36 N VAL A 25 SHEET 4 AA10 ASN A 45 ASP A 49 -1 O LEU A 47 N VAL A 39 SHEET 5 AA10 LYS A 53 ASN A 58 -1 O CYS A 55 N ILE A 48 SHEET 6 AA10 ALA A 131 PRO A 135 -1 O LEU A 132 N VAL A 56 SHEET 7 AA10 GLY A 91 LEU A 96 -1 O THR A 93 N CYS A 133 SHEET 8 AA10 GLY A 99 ILE A 108 -1 O GLY A 99 N LEU A 96 SHEET 9 AA10 GLU A 112 GLU A 117 -1 O LEU A 114 N ILE A 106 SHEET 10 AA10 ASP A 120 HIS A 125 -1 O ASP A 120 N GLU A 117 SSBOND 1 CYS A 55 CYS A 133 1555 1555 2.09 CRYST1 89.770 89.770 36.380 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011140 0.006431 0.000000 0.00000 SCALE2 0.000000 0.012863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027488 0.00000