data_2X4W # _entry.id 2X4W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2X4W PDBE EBI-42575 WWPDB D_1290042575 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2X35 unspecified 'MOLECULAR BASIS OF HISTONE H3K36ME3 RECOGNITION BY THE PWWP DOMAIN OF BRPF1.' PDB 2D9E unspecified 'SOLUTION STRUCTURE OF THE BROMODOMAIN OF PEREGRIN' PDB 2X4Y unspecified 'MOLECULAR BASIS OF HISTONE H3K36ME3 RECOGNITION BY THE PWWP DOMAIN OF BRPF1.' PDB 2X4X unspecified 'MOLECULAR BASIS OF HISTONE H3K36ME3 RECOGNITION BY THE PWWP DOMAIN OF BRPF1.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2X4W _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-02-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vezzoli, A.' 1 'Bonadies, N.' 2 'Allen, M.D.' 3 'Freund, S.M.V.' 4 'Santiveri, C.M.' 5 'Kvinlaug, B.' 6 'Huntly, B.J.P.' 7 'Gottgens, B.' 8 'Bycroft, M.' 9 # _citation.id primary _citation.title 'Molecular Basis of Histone H3K36Me3 Recognition by the Pwwp Domain of Brpf1.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 17 _citation.page_first 617 _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20400950 _citation.pdbx_database_id_DOI 10.1038/NSMB.1797 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vezzoli, A.' 1 primary 'Bonadies, N.' 2 primary 'Allen, M.D.' 3 primary 'Freund, S.M.V.' 4 primary 'Santiveri, C.M.' 5 primary 'Kvinlaug, B.' 6 primary 'Huntly, B.J.P.' 7 primary 'Gottgens, B.' 8 primary 'Bycroft, M.' 9 # _cell.entry_id 2X4W _cell.length_a 43.261 _cell.length_b 71.053 _cell.length_c 113.982 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X4W _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PEREGRIN 15249.579 1 ? ? 'RESIDUES 1076-1205' ? 2 polymer syn 'HISTONE H3.2' 2330.777 1 ? ? 'RESIDUES 23-43' 'TRIMETHYLATION AT POSITION 36' 3 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 4 water nat water 18.015 190 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'BRPF1 PWWP DOMAIN, BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 1, PROTEIN BR140' 2 'HUMAN H3 HISTONE, H3/M, H3/O' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GGSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRT WQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGE ; ;GGSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRT WQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGE ; A ? 2 'polypeptide(L)' no yes 'TKAARKSAPATGGV(M3L)KPHRYR' TKAARKSAPATGGVKKPHRYR B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 SER n 1 4 GLU n 1 5 ASP n 1 6 GLU n 1 7 ASP n 1 8 SER n 1 9 PRO n 1 10 LEU n 1 11 ASP n 1 12 ALA n 1 13 LEU n 1 14 ASP n 1 15 LEU n 1 16 VAL n 1 17 TRP n 1 18 ALA n 1 19 LYS n 1 20 CYS n 1 21 ARG n 1 22 GLY n 1 23 TYR n 1 24 PRO n 1 25 SER n 1 26 TYR n 1 27 PRO n 1 28 ALA n 1 29 LEU n 1 30 ILE n 1 31 ILE n 1 32 ASP n 1 33 PRO n 1 34 LYS n 1 35 MET n 1 36 PRO n 1 37 ARG n 1 38 GLU n 1 39 GLY n 1 40 MET n 1 41 PHE n 1 42 HIS n 1 43 HIS n 1 44 GLY n 1 45 VAL n 1 46 PRO n 1 47 ILE n 1 48 PRO n 1 49 VAL n 1 50 PRO n 1 51 PRO n 1 52 LEU n 1 53 GLU n 1 54 VAL n 1 55 LEU n 1 56 LYS n 1 57 LEU n 1 58 GLY n 1 59 GLU n 1 60 GLN n 1 61 MET n 1 62 THR n 1 63 GLN n 1 64 GLU n 1 65 ALA n 1 66 ARG n 1 67 GLU n 1 68 HIS n 1 69 LEU n 1 70 TYR n 1 71 LEU n 1 72 VAL n 1 73 LEU n 1 74 PHE n 1 75 PHE n 1 76 ASP n 1 77 ASN n 1 78 LYS n 1 79 ARG n 1 80 THR n 1 81 TRP n 1 82 GLN n 1 83 TRP n 1 84 LEU n 1 85 PRO n 1 86 ARG n 1 87 THR n 1 88 LYS n 1 89 LEU n 1 90 VAL n 1 91 PRO n 1 92 LEU n 1 93 GLY n 1 94 VAL n 1 95 ASN n 1 96 GLN n 1 97 ASP n 1 98 LEU n 1 99 ASP n 1 100 LYS n 1 101 GLU n 1 102 LYS n 1 103 MET n 1 104 LEU n 1 105 GLU n 1 106 GLY n 1 107 ARG n 1 108 LYS n 1 109 SER n 1 110 ASN n 1 111 ILE n 1 112 ARG n 1 113 LYS n 1 114 SER n 1 115 VAL n 1 116 GLN n 1 117 ILE n 1 118 ALA n 1 119 TYR n 1 120 HIS n 1 121 ARG n 1 122 ALA n 1 123 LEU n 1 124 GLN n 1 125 HIS n 1 126 ARG n 1 127 SER n 1 128 LYS n 1 129 VAL n 1 130 GLN n 1 131 GLY n 1 132 GLU n 2 1 THR n 2 2 LYS n 2 3 ALA n 2 4 ALA n 2 5 ARG n 2 6 LYS n 2 7 SER n 2 8 ALA n 2 9 PRO n 2 10 ALA n 2 11 THR n 2 12 GLY n 2 13 GLY n 2 14 VAL n 2 15 M3L n 2 16 LYS n 2 17 PRO n 2 18 HIS n 2 19 ARG n 2 20 TYR n 2 21 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant C41 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PRSETA _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP BRPF1_HUMAN 1 ? ? P55201 ? 2 UNP H32_HUMAN 2 ? ? Q71DI3 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2X4W A 3 ? 132 ? P55201 1076 ? 1205 ? 1076 1205 2 2 2X4W B 1 ? 21 ? Q71DI3 23 ? 43 ? 22 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2X4W GLY A 1 ? UNP P55201 ? ? 'expression tag' 1074 1 1 2X4W GLY A 2 ? UNP P55201 ? ? 'expression tag' 1075 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2X4W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.62 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '4M SODIUM FORMATE, 0.1M TRIS (PH 8.5), 0.01M NACL' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9334 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.9334 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2X4W _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.53 _reflns.d_resolution_high 1.50 _reflns.number_obs 28447 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.90 _reflns.B_iso_Wilson_estimate 17.37 _reflns.pdbx_redundancy 5.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.37 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.60 _reflns_shell.pdbx_redundancy 4.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2X4W _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 28447 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.505 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.30 _refine.ls_R_factor_obs 0.1907 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1894 _refine.ls_R_factor_R_free 0.2157 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 33.47 _refine.aniso_B[1][1] 1.6774 _refine.aniso_B[2][2] 1.8213 _refine.aniso_B[3][3] -3.4986 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.397 _refine.solvent_model_param_bsol 64.342 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 21.40 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1117 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 190 _refine_hist.number_atoms_total 1310 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 33.505 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 1178 'X-RAY DIFFRACTION' ? f_angle_d 1.355 ? ? 1594 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.680 ? ? 466 'X-RAY DIFFRACTION' ? f_chiral_restr 0.093 ? ? 170 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 203 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.5001 1.5273 2664 0.2716 98.00 0.2567 . . 131 . . 'X-RAY DIFFRACTION' . 1.5273 1.5567 2685 0.2597 98.00 0.2905 . . 132 . . 'X-RAY DIFFRACTION' . 1.5567 1.5885 2645 0.2403 99.00 0.2743 . . 173 . . 'X-RAY DIFFRACTION' . 1.5885 1.6230 2680 0.2326 99.00 0.2345 . . 142 . . 'X-RAY DIFFRACTION' . 1.6230 1.6608 2743 0.2214 99.00 0.2508 . . 120 . . 'X-RAY DIFFRACTION' . 1.6608 1.7023 2673 0.2191 100.00 0.2405 . . 141 . . 'X-RAY DIFFRACTION' . 1.7023 1.7483 2685 0.2091 99.00 0.2482 . . 145 . . 'X-RAY DIFFRACTION' . 1.7483 1.7998 2720 0.2131 100.00 0.2117 . . 158 . . 'X-RAY DIFFRACTION' . 1.7998 1.8579 2700 0.1981 100.00 0.2840 . . 149 . . 'X-RAY DIFFRACTION' . 1.8579 1.9243 2712 0.1973 100.00 0.2446 . . 123 . . 'X-RAY DIFFRACTION' . 1.9243 2.0013 2727 0.1950 100.00 0.2438 . . 115 . . 'X-RAY DIFFRACTION' . 2.0013 2.0924 2715 0.1872 100.00 0.2376 . . 142 . . 'X-RAY DIFFRACTION' . 2.0924 2.2027 2726 0.1776 100.00 0.1786 . . 151 . . 'X-RAY DIFFRACTION' . 2.2027 2.3406 2689 0.1848 100.00 0.2180 . . 152 . . 'X-RAY DIFFRACTION' . 2.3406 2.5213 2760 0.1976 100.00 0.2527 . . 129 . . 'X-RAY DIFFRACTION' . 2.5213 2.7749 2674 0.1922 100.00 0.2095 . . 137 . . 'X-RAY DIFFRACTION' . 2.7749 3.1762 2746 0.1835 100.00 0.2051 . . 134 . . 'X-RAY DIFFRACTION' . 3.1762 4.0006 2683 0.1562 100.00 0.1599 . . 158 . . 'X-RAY DIFFRACTION' . 4.0006 33.5131 2688 0.1735 98.00 0.2004 . . 151 . . # _struct.entry_id 2X4W _struct.title 'Molecular basis of Histone H3K36me3 recognition by the PWWP domain of BRPF1.' _struct.pdbx_descriptor 'PEREGRIN, HISTONE H3.2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2X4W _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, METAL-BINDING, ZINC-FINGER, CHROMATIN REGULATOR, TRANSCRIPTION REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 51 ? ARG A 66 ? PRO A 1124 ARG A 1139 1 ? 16 HELX_P HELX_P2 2 PRO A 85 ? THR A 87 ? PRO A 1158 THR A 1160 5 ? 3 HELX_P HELX_P3 3 ASN A 95 ? LEU A 104 ? ASN A 1168 LEU A 1177 1 ? 10 HELX_P HELX_P4 4 LYS A 108 ? GLY A 131 ? LYS A 1181 GLY A 1204 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B VAL 14 C ? ? ? 1_555 B M3L 15 N ? ? B VAL 35 B M3L 36 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? B M3L 15 C ? ? ? 1_555 B LYS 16 N ? ? B M3L 36 B LYS 37 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TRP A 81 ? LEU A 84 ? TRP A 1154 LEU A 1157 AA 2 TYR A 70 ? PHE A 74 ? TYR A 1143 PHE A 1147 AA 3 TYR A 26 ? ILE A 31 ? TYR A 1099 ILE A 1104 AA 4 LEU A 15 ? ALA A 18 ? LEU A 1088 ALA A 1091 AA 5 LEU A 89 ? PRO A 91 ? LEU A 1162 PRO A 1164 AB 1 MET A 40 ? HIS A 42 ? MET A 1113 HIS A 1115 AB 2 VAL A 45 ? ILE A 47 ? VAL A 1118 ILE A 1120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 84 ? N LEU A 1157 O TYR A 70 ? O TYR A 1143 AA 2 3 N LEU A 73 ? N LEU A 1146 O LEU A 29 ? O LEU A 1102 AA 3 4 N ALA A 28 ? N ALA A 1101 O VAL A 16 ? O VAL A 1089 AA 4 5 N TRP A 17 ? N TRP A 1090 O VAL A 90 ? O VAL A 1163 AB 1 2 N HIS A 42 ? N HIS A 1115 O VAL A 45 ? O VAL A 1118 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE FMT A 2205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 CYS A 20 ? CYS A 1093 . ? 1_555 ? 2 AC1 6 ARG A 21 ? ARG A 1094 . ? 1_555 ? 3 AC1 6 LEU A 84 ? LEU A 1157 . ? 1_555 ? 4 AC1 6 LYS A 88 ? LYS A 1161 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 2121 . ? 1_555 ? 6 AC1 6 PRO B 17 ? PRO B 38 . ? 2_655 ? # _database_PDB_matrix.entry_id 2X4W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2X4W _atom_sites.fract_transf_matrix[1][1] 0.023116 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014074 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008773 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1074 ? ? ? A . n A 1 2 GLY 2 1075 ? ? ? A . n A 1 3 SER 3 1076 ? ? ? A . n A 1 4 GLU 4 1077 ? ? ? A . n A 1 5 ASP 5 1078 ? ? ? A . n A 1 6 GLU 6 1079 ? ? ? A . n A 1 7 ASP 7 1080 1080 ASP ASP A . n A 1 8 SER 8 1081 1081 SER SER A . n A 1 9 PRO 9 1082 1082 PRO PRO A . n A 1 10 LEU 10 1083 1083 LEU LEU A . n A 1 11 ASP 11 1084 1084 ASP ASP A . n A 1 12 ALA 12 1085 1085 ALA ALA A . n A 1 13 LEU 13 1086 1086 LEU LEU A . n A 1 14 ASP 14 1087 1087 ASP ASP A . n A 1 15 LEU 15 1088 1088 LEU LEU A . n A 1 16 VAL 16 1089 1089 VAL VAL A . n A 1 17 TRP 17 1090 1090 TRP TRP A . n A 1 18 ALA 18 1091 1091 ALA ALA A . n A 1 19 LYS 19 1092 1092 LYS LYS A . n A 1 20 CYS 20 1093 1093 CYS CYS A . n A 1 21 ARG 21 1094 1094 ARG ARG A . n A 1 22 GLY 22 1095 1095 GLY GLY A . n A 1 23 TYR 23 1096 1096 TYR TYR A . n A 1 24 PRO 24 1097 1097 PRO PRO A . n A 1 25 SER 25 1098 1098 SER SER A . n A 1 26 TYR 26 1099 1099 TYR TYR A . n A 1 27 PRO 27 1100 1100 PRO PRO A . n A 1 28 ALA 28 1101 1101 ALA ALA A . n A 1 29 LEU 29 1102 1102 LEU LEU A . n A 1 30 ILE 30 1103 1103 ILE ILE A . n A 1 31 ILE 31 1104 1104 ILE ILE A . n A 1 32 ASP 32 1105 1105 ASP ASP A . n A 1 33 PRO 33 1106 1106 PRO PRO A . n A 1 34 LYS 34 1107 1107 LYS LYS A . n A 1 35 MET 35 1108 1108 MET MET A . n A 1 36 PRO 36 1109 1109 PRO PRO A . n A 1 37 ARG 37 1110 1110 ARG ARG A . n A 1 38 GLU 38 1111 1111 GLU GLU A . n A 1 39 GLY 39 1112 1112 GLY GLY A . n A 1 40 MET 40 1113 1113 MET MET A . n A 1 41 PHE 41 1114 1114 PHE PHE A . n A 1 42 HIS 42 1115 1115 HIS HIS A . n A 1 43 HIS 43 1116 1116 HIS HIS A . n A 1 44 GLY 44 1117 1117 GLY GLY A . n A 1 45 VAL 45 1118 1118 VAL VAL A . n A 1 46 PRO 46 1119 1119 PRO PRO A . n A 1 47 ILE 47 1120 1120 ILE ILE A . n A 1 48 PRO 48 1121 1121 PRO PRO A . n A 1 49 VAL 49 1122 1122 VAL VAL A . n A 1 50 PRO 50 1123 1123 PRO PRO A . n A 1 51 PRO 51 1124 1124 PRO PRO A . n A 1 52 LEU 52 1125 1125 LEU LEU A . n A 1 53 GLU 53 1126 1126 GLU GLU A . n A 1 54 VAL 54 1127 1127 VAL VAL A . n A 1 55 LEU 55 1128 1128 LEU LEU A . n A 1 56 LYS 56 1129 1129 LYS LYS A . n A 1 57 LEU 57 1130 1130 LEU LEU A . n A 1 58 GLY 58 1131 1131 GLY GLY A . n A 1 59 GLU 59 1132 1132 GLU GLU A . n A 1 60 GLN 60 1133 1133 GLN GLN A . n A 1 61 MET 61 1134 1134 MET MET A . n A 1 62 THR 62 1135 1135 THR THR A . n A 1 63 GLN 63 1136 1136 GLN GLN A . n A 1 64 GLU 64 1137 1137 GLU GLU A . n A 1 65 ALA 65 1138 1138 ALA ALA A . n A 1 66 ARG 66 1139 1139 ARG ARG A . n A 1 67 GLU 67 1140 1140 GLU GLU A . n A 1 68 HIS 68 1141 1141 HIS HIS A . n A 1 69 LEU 69 1142 1142 LEU LEU A . n A 1 70 TYR 70 1143 1143 TYR TYR A . n A 1 71 LEU 71 1144 1144 LEU LEU A . n A 1 72 VAL 72 1145 1145 VAL VAL A . n A 1 73 LEU 73 1146 1146 LEU LEU A . n A 1 74 PHE 74 1147 1147 PHE PHE A . n A 1 75 PHE 75 1148 1148 PHE PHE A . n A 1 76 ASP 76 1149 1149 ASP ASP A . n A 1 77 ASN 77 1150 1150 ASN ASN A . n A 1 78 LYS 78 1151 1151 LYS LYS A . n A 1 79 ARG 79 1152 1152 ARG ARG A . n A 1 80 THR 80 1153 1153 THR THR A . n A 1 81 TRP 81 1154 1154 TRP TRP A . n A 1 82 GLN 82 1155 1155 GLN GLN A . n A 1 83 TRP 83 1156 1156 TRP TRP A . n A 1 84 LEU 84 1157 1157 LEU LEU A . n A 1 85 PRO 85 1158 1158 PRO PRO A . n A 1 86 ARG 86 1159 1159 ARG ARG A . n A 1 87 THR 87 1160 1160 THR THR A . n A 1 88 LYS 88 1161 1161 LYS LYS A . n A 1 89 LEU 89 1162 1162 LEU LEU A . n A 1 90 VAL 90 1163 1163 VAL VAL A . n A 1 91 PRO 91 1164 1164 PRO PRO A . n A 1 92 LEU 92 1165 1165 LEU LEU A . n A 1 93 GLY 93 1166 1166 GLY GLY A . n A 1 94 VAL 94 1167 1167 VAL VAL A . n A 1 95 ASN 95 1168 1168 ASN ASN A . n A 1 96 GLN 96 1169 1169 GLN GLN A . n A 1 97 ASP 97 1170 1170 ASP ASP A . n A 1 98 LEU 98 1171 1171 LEU LEU A . n A 1 99 ASP 99 1172 1172 ASP ASP A . n A 1 100 LYS 100 1173 1173 LYS LYS A . n A 1 101 GLU 101 1174 1174 GLU GLU A . n A 1 102 LYS 102 1175 1175 LYS LYS A . n A 1 103 MET 103 1176 1176 MET MET A . n A 1 104 LEU 104 1177 1177 LEU LEU A . n A 1 105 GLU 105 1178 1178 GLU GLU A . n A 1 106 GLY 106 1179 1179 GLY GLY A . n A 1 107 ARG 107 1180 1180 ARG ARG A . n A 1 108 LYS 108 1181 1181 LYS LYS A . n A 1 109 SER 109 1182 1182 SER SER A . n A 1 110 ASN 110 1183 1183 ASN ASN A . n A 1 111 ILE 111 1184 1184 ILE ILE A . n A 1 112 ARG 112 1185 1185 ARG ARG A . n A 1 113 LYS 113 1186 1186 LYS LYS A . n A 1 114 SER 114 1187 1187 SER SER A . n A 1 115 VAL 115 1188 1188 VAL VAL A . n A 1 116 GLN 116 1189 1189 GLN GLN A . n A 1 117 ILE 117 1190 1190 ILE ILE A . n A 1 118 ALA 118 1191 1191 ALA ALA A . n A 1 119 TYR 119 1192 1192 TYR TYR A . n A 1 120 HIS 120 1193 1193 HIS HIS A . n A 1 121 ARG 121 1194 1194 ARG ARG A . n A 1 122 ALA 122 1195 1195 ALA ALA A . n A 1 123 LEU 123 1196 1196 LEU LEU A . n A 1 124 GLN 124 1197 1197 GLN GLN A . n A 1 125 HIS 125 1198 1198 HIS HIS A . n A 1 126 ARG 126 1199 1199 ARG ARG A . n A 1 127 SER 127 1200 1200 SER SER A . n A 1 128 LYS 128 1201 1201 LYS LYS A . n A 1 129 VAL 129 1202 1202 VAL VAL A . n A 1 130 GLN 130 1203 1203 GLN GLN A . n A 1 131 GLY 131 1204 1204 GLY GLY A . n A 1 132 GLU 132 1205 ? ? ? A . n B 2 1 THR 1 22 ? ? ? B . n B 2 2 LYS 2 23 ? ? ? B . n B 2 3 ALA 3 24 ? ? ? B . n B 2 4 ALA 4 25 ? ? ? B . n B 2 5 ARG 5 26 ? ? ? B . n B 2 6 LYS 6 27 ? ? ? B . n B 2 7 SER 7 28 28 SER SER B . n B 2 8 ALA 8 29 29 ALA ALA B . n B 2 9 PRO 9 30 30 PRO PRO B . n B 2 10 ALA 10 31 31 ALA ALA B . n B 2 11 THR 11 32 32 THR THR B . n B 2 12 GLY 12 33 33 GLY GLY B . n B 2 13 GLY 13 34 34 GLY GLY B . n B 2 14 VAL 14 35 35 VAL VAL B . n B 2 15 M3L 15 36 36 M3L M3L B . n B 2 16 LYS 16 37 37 LYS LYS B . n B 2 17 PRO 17 38 38 PRO PRO B . n B 2 18 HIS 18 39 39 HIS HIS B . n B 2 19 ARG 19 40 40 ARG ARG B . n B 2 20 TYR 20 41 ? ? ? B . n B 2 21 ARG 21 42 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FMT 1 2205 2205 FMT FMT A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . D 4 HOH 87 2087 2087 HOH HOH A . D 4 HOH 88 2088 2088 HOH HOH A . D 4 HOH 89 2089 2089 HOH HOH A . D 4 HOH 90 2090 2090 HOH HOH A . D 4 HOH 91 2091 2091 HOH HOH A . D 4 HOH 92 2092 2092 HOH HOH A . D 4 HOH 93 2093 2093 HOH HOH A . D 4 HOH 94 2094 2094 HOH HOH A . D 4 HOH 95 2095 2095 HOH HOH A . D 4 HOH 96 2096 2096 HOH HOH A . D 4 HOH 97 2097 2097 HOH HOH A . D 4 HOH 98 2098 2098 HOH HOH A . D 4 HOH 99 2099 2099 HOH HOH A . D 4 HOH 100 2100 2100 HOH HOH A . D 4 HOH 101 2101 2101 HOH HOH A . D 4 HOH 102 2102 2102 HOH HOH A . D 4 HOH 103 2103 2103 HOH HOH A . D 4 HOH 104 2104 2104 HOH HOH A . D 4 HOH 105 2105 2105 HOH HOH A . D 4 HOH 106 2106 2106 HOH HOH A . D 4 HOH 107 2107 2107 HOH HOH A . D 4 HOH 108 2108 2108 HOH HOH A . D 4 HOH 109 2109 2109 HOH HOH A . D 4 HOH 110 2110 2110 HOH HOH A . D 4 HOH 111 2111 2111 HOH HOH A . D 4 HOH 112 2112 2112 HOH HOH A . D 4 HOH 113 2113 2113 HOH HOH A . D 4 HOH 114 2114 2114 HOH HOH A . D 4 HOH 115 2115 2115 HOH HOH A . D 4 HOH 116 2116 2116 HOH HOH A . D 4 HOH 117 2117 2117 HOH HOH A . D 4 HOH 118 2118 2118 HOH HOH A . D 4 HOH 119 2119 2119 HOH HOH A . D 4 HOH 120 2120 2120 HOH HOH A . D 4 HOH 121 2121 2121 HOH HOH A . D 4 HOH 122 2122 2122 HOH HOH A . D 4 HOH 123 2123 2123 HOH HOH A . D 4 HOH 124 2124 2124 HOH HOH A . D 4 HOH 125 2125 2125 HOH HOH A . D 4 HOH 126 2126 2126 HOH HOH A . D 4 HOH 127 2127 2127 HOH HOH A . D 4 HOH 128 2128 2128 HOH HOH A . D 4 HOH 129 2129 2129 HOH HOH A . D 4 HOH 130 2130 2130 HOH HOH A . D 4 HOH 131 2131 2131 HOH HOH A . D 4 HOH 132 2132 2132 HOH HOH A . D 4 HOH 133 2133 2133 HOH HOH A . D 4 HOH 134 2134 2134 HOH HOH A . D 4 HOH 135 2135 2135 HOH HOH A . D 4 HOH 136 2136 2136 HOH HOH A . D 4 HOH 137 2137 2137 HOH HOH A . D 4 HOH 138 2138 2138 HOH HOH A . D 4 HOH 139 2139 2139 HOH HOH A . D 4 HOH 140 2140 2140 HOH HOH A . D 4 HOH 141 2141 2141 HOH HOH A . D 4 HOH 142 2142 2142 HOH HOH A . D 4 HOH 143 2143 2143 HOH HOH A . D 4 HOH 144 2144 2144 HOH HOH A . D 4 HOH 145 2145 2145 HOH HOH A . D 4 HOH 146 2146 2146 HOH HOH A . D 4 HOH 147 2147 2147 HOH HOH A . D 4 HOH 148 2148 2148 HOH HOH A . D 4 HOH 149 2149 2149 HOH HOH A . D 4 HOH 150 2150 2150 HOH HOH A . D 4 HOH 151 2151 2151 HOH HOH A . D 4 HOH 152 2152 2152 HOH HOH A . D 4 HOH 153 2153 2153 HOH HOH A . D 4 HOH 154 2154 2154 HOH HOH A . D 4 HOH 155 2155 2155 HOH HOH A . D 4 HOH 156 2156 2156 HOH HOH A . D 4 HOH 157 2157 2157 HOH HOH A . D 4 HOH 158 2158 2158 HOH HOH A . D 4 HOH 159 2159 2159 HOH HOH A . D 4 HOH 160 2160 2160 HOH HOH A . D 4 HOH 161 2161 2161 HOH HOH A . D 4 HOH 162 2162 2162 HOH HOH A . D 4 HOH 163 2163 2163 HOH HOH A . D 4 HOH 164 2164 2164 HOH HOH A . D 4 HOH 165 2165 2165 HOH HOH A . D 4 HOH 166 2166 2166 HOH HOH A . D 4 HOH 167 2167 2167 HOH HOH A . D 4 HOH 168 2168 2168 HOH HOH A . D 4 HOH 169 2169 2169 HOH HOH A . D 4 HOH 170 2170 2170 HOH HOH A . D 4 HOH 171 2171 2171 HOH HOH A . D 4 HOH 172 2172 2172 HOH HOH A . D 4 HOH 173 2173 2173 HOH HOH A . D 4 HOH 174 2174 2174 HOH HOH A . D 4 HOH 175 2175 2175 HOH HOH A . D 4 HOH 176 2176 2176 HOH HOH A . E 4 HOH 1 2001 2001 HOH HOH B . E 4 HOH 2 2002 2002 HOH HOH B . E 4 HOH 3 2003 2003 HOH HOH B . E 4 HOH 4 2004 2004 HOH HOH B . E 4 HOH 5 2005 2005 HOH HOH B . E 4 HOH 6 2006 2006 HOH HOH B . E 4 HOH 7 2007 2007 HOH HOH B . E 4 HOH 8 2008 2008 HOH HOH B . E 4 HOH 9 2009 2009 HOH HOH B . E 4 HOH 10 2010 2010 HOH HOH B . E 4 HOH 11 2011 2011 HOH HOH B . E 4 HOH 12 2012 2012 HOH HOH B . E 4 HOH 13 2013 2013 HOH HOH B . E 4 HOH 14 2014 2014 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id M3L _pdbx_struct_mod_residue.label_seq_id 15 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id M3L _pdbx_struct_mod_residue.auth_seq_id 36 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details N-TRIMETHYLLYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1490 ? 1 MORE -10.4 ? 1 'SSA (A^2)' 8510 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2010 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-21 2 'Structure model' 1 1 2011-09-21 3 'Structure model' 1 2 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Refinement description' 4 2 'Structure model' 'Version format compliance' 5 3 'Structure model' 'Source and taxonomy' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 2 3 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 3 3 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 4 3 'Structure model' '_entity_src_gen.pdbx_host_org_variant' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2X4W _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'LYSINE 36 IS TRIMETHYLATED' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 1150 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2108 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2025 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2125 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_454 _pdbx_validate_symm_contact.dist 2.15 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 1148 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -92.02 _pdbx_validate_torsion.psi 34.45 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1074 ? A GLY 1 2 1 Y 1 A GLY 1075 ? A GLY 2 3 1 Y 1 A SER 1076 ? A SER 3 4 1 Y 1 A GLU 1077 ? A GLU 4 5 1 Y 1 A ASP 1078 ? A ASP 5 6 1 Y 1 A GLU 1079 ? A GLU 6 7 1 Y 1 A GLU 1205 ? A GLU 132 8 1 Y 1 B THR 22 ? B THR 1 9 1 Y 1 B LYS 23 ? B LYS 2 10 1 Y 1 B ALA 24 ? B ALA 3 11 1 Y 1 B ALA 25 ? B ALA 4 12 1 Y 1 B ARG 26 ? B ARG 5 13 1 Y 1 B LYS 27 ? B LYS 6 14 1 Y 1 B TYR 41 ? B TYR 20 15 1 Y 1 B ARG 42 ? B ARG 21 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'FORMIC ACID' FMT 4 water HOH #