HEADER HYDROLASE 05-FEB-10 2X56 TITLE YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA (NATIVE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULASE/FIBRINOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PLA, PLASMINOGEN ACTIVATOR; COMPND 5 EC: 3.4.23.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PB22 KEYWDS TRANSMEMBRANE, ASPARTYL PROTEASE, CELL OUTER MEMBRANE, OMPTIN, KEYWDS 2 PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.EREN,M.MURPHY,J.GOGUEN,B.VAN DEN BERG REVDAT 4 01-MAY-24 2X56 1 REMARK REVDAT 3 24-JAN-18 2X56 1 SOURCE JRNL REVDAT 2 28-MAR-12 2X56 1 JRNL REMARK VERSN REVDAT 1 28-JUL-10 2X56 0 JRNL AUTH E.EREN,M.MURPHY,J.GOGUEN,B.VAN DEN BERG JRNL TITL AN ACTIVE SITE WATER NETWORK IN THE PLASMINOGEN ACTIVATOR JRNL TITL 2 PLA FROM YERSINIA PESTIS JRNL REF STRUCTURE V. 18 809 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20637417 JRNL DOI 10.1016/J.STR.2010.03.013 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 31644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9674 - 5.3671 0.97 2603 163 0.2456 0.2603 REMARK 3 2 5.3671 - 4.2738 0.97 2479 149 0.1750 0.1899 REMARK 3 3 4.2738 - 3.7376 0.98 2453 154 0.1851 0.1875 REMARK 3 4 3.7376 - 3.3977 0.98 2441 154 0.1629 0.1968 REMARK 3 5 3.3977 - 3.1552 0.97 2386 148 0.1684 0.1919 REMARK 3 6 3.1552 - 2.9698 0.95 2337 146 0.1781 0.2182 REMARK 3 7 2.9698 - 2.8215 0.92 2247 144 0.1864 0.2303 REMARK 3 8 2.8215 - 2.6989 0.93 2263 135 0.1912 0.2514 REMARK 3 9 2.6989 - 2.5953 0.90 2226 135 0.1944 0.2130 REMARK 3 10 2.5953 - 2.5059 0.88 2133 134 0.2078 0.2471 REMARK 3 11 2.5059 - 2.4277 0.87 2122 134 0.2172 0.2546 REMARK 3 12 2.4277 - 2.3584 0.88 2141 138 0.2101 0.2543 REMARK 3 13 2.3584 - 2.2964 0.81 1959 120 0.2156 0.2382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 57.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.01330 REMARK 3 B22 (A**2) : 3.01330 REMARK 3 B33 (A**2) : -6.02650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2409 REMARK 3 ANGLE : 1.217 3188 REMARK 3 CHIRALITY : 0.091 306 REMARK 3 PLANARITY : 0.004 394 REMARK 3 DIHEDRAL : 21.772 899 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:53) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6867 58.8340 9.6027 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.1021 REMARK 3 T33: 0.0578 T12: -0.0004 REMARK 3 T13: -0.0019 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.1520 L22: 0.4113 REMARK 3 L33: 0.5413 L12: 0.2357 REMARK 3 L13: -0.1129 L23: 0.1076 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: -0.0096 S13: -0.1178 REMARK 3 S21: -0.0599 S22: -0.0297 S23: -0.0740 REMARK 3 S31: 0.0164 S32: 0.0154 S33: 0.0429 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 54:134) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8836 58.9397 7.8329 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.1117 REMARK 3 T33: 0.0613 T12: -0.0356 REMARK 3 T13: -0.0030 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 0.6271 L22: 0.3131 REMARK 3 L33: 1.3570 L12: -0.0686 REMARK 3 L13: 0.2919 L23: 0.0416 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: -0.0005 S13: 0.0675 REMARK 3 S21: -0.0559 S22: 0.0080 S23: -0.0809 REMARK 3 S31: 0.2197 S32: -0.0662 S33: -0.0123 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 135:161) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4615 63.6441 19.7370 REMARK 3 T TENSOR REMARK 3 T11: 0.0661 T22: 0.4363 REMARK 3 T33: 0.1099 T12: 0.0070 REMARK 3 T13: -0.0074 T23: 0.0755 REMARK 3 L TENSOR REMARK 3 L11: 0.6473 L22: 0.6281 REMARK 3 L33: 1.7138 L12: -0.0780 REMARK 3 L13: 1.0514 L23: 0.0216 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: 0.5516 S13: 0.3261 REMARK 3 S21: 0.0749 S22: -0.0785 S23: -0.0687 REMARK 3 S31: 0.0827 S32: 0.7749 S33: 0.1168 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 162:216) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6751 62.4990 7.9392 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.1951 REMARK 3 T33: 0.1339 T12: -0.0696 REMARK 3 T13: -0.0018 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.1044 L22: 0.2141 REMARK 3 L33: 0.2755 L12: 0.4136 REMARK 3 L13: -0.1573 L23: 0.0164 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.2000 S13: 0.1318 REMARK 3 S21: 0.0112 S22: 0.0056 S23: 0.0299 REMARK 3 S31: -0.0039 S32: 0.0158 S33: 0.0347 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 217:280) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8434 56.7365 5.6678 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.1802 REMARK 3 T33: 0.1397 T12: -0.0640 REMARK 3 T13: -0.0134 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.4836 L22: 0.8941 REMARK 3 L33: 0.2386 L12: 1.2182 REMARK 3 L13: 0.1951 L23: 0.4149 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.4659 S13: -0.2565 REMARK 3 S21: -0.0893 S22: 0.0901 S23: -0.1655 REMARK 3 S31: 0.0437 S32: 0.0211 S33: -0.0720 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 281:292) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5160 51.4847 13.1000 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1255 REMARK 3 T33: 0.1059 T12: -0.0530 REMARK 3 T13: -0.0205 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.9977 L22: 0.9332 REMARK 3 L33: 0.6554 L12: 0.2487 REMARK 3 L13: 0.3810 L23: 0.4499 REMARK 3 S TENSOR REMARK 3 S11: 0.1941 S12: 0.0995 S13: -0.2208 REMARK 3 S21: 0.1112 S22: -0.2405 S23: -0.0109 REMARK 3 S31: 0.0919 S32: -0.0297 S33: 0.0376 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042798. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PLA NATIVE OSMIUM DERIVATIVE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 400, 0.1 M LISO4, 0.1 M LI REMARK 280 CITRATE, PH 4.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.00133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.50067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.25100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.75033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.75167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.00133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 43.50067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 21.75033 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.25100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 108.75167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2081 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 253 REMARK 465 LYS A 254 REMARK 465 GLY A 255 REMARK 465 GLY A 256 REMARK 465 THR A 257 REMARK 465 GLN A 258 REMARK 465 THR A 259 REMARK 465 ILE A 260 REMARK 465 ASP A 261 REMARK 465 LYS A 262 REMARK 465 ASN A 263 REMARK 465 SER A 264 REMARK 465 GLY A 265 REMARK 465 ASP A 266 REMARK 465 SER A 267 REMARK 465 VAL A 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 49 54.90 -151.03 REMARK 500 ASP A 60 78.25 -109.97 REMARK 500 ASP A 123 -157.49 -147.44 REMARK 500 ASN A 186 -119.10 57.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 295 REMARK 610 C8E A 296 REMARK 610 C8E A 1293 REMARK 610 C8E A 1294 REMARK 610 C8E A 1295 REMARK 610 C8E A 1296 REMARK 610 C8E A 1297 REMARK 610 C8E A 1298 REMARK 610 C8E A 1299 REMARK 610 C8E A 1300 REMARK 610 C8E A 1301 REMARK 610 C8E A 1302 REMARK 610 C8E A 1303 REMARK 610 C8E A 1304 REMARK 610 C8E A 1305 REMARK 610 C8E A 1306 REMARK 610 C8E A 1307 REMARK 610 C8E A 1308 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 13-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 14-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C8E A 1308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X55 RELATED DB: PDB REMARK 900 YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA ( NATIVE) REMARK 900 RELATED ID: 2X4M RELATED DB: PDB REMARK 900 YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA DBREF 2X56 A 1 292 UNP P17811 COLY_YERPE 21 312 SEQRES 1 A 292 ALA SER SER GLN LEU ILE PRO ASN ILE SER PRO ASP SER SEQRES 2 A 292 PHE THR VAL ALA ALA SER THR GLY MET LEU SER GLY LYS SEQRES 3 A 292 SER HIS GLU MET LEU TYR ASP ALA GLU THR GLY ARG LYS SEQRES 4 A 292 ILE SER GLN LEU ASP TRP LYS ILE LYS ASN VAL ALA ILE SEQRES 5 A 292 LEU LYS GLY ASP ILE SER TRP ASP PRO TYR SER PHE LEU SEQRES 6 A 292 THR LEU ASN ALA ARG GLY TRP THR SER LEU ALA SER GLY SEQRES 7 A 292 SER GLY ASN MET ASP ASP TYR ASP TRP MET ASN GLU ASN SEQRES 8 A 292 GLN SER GLU TRP THR ASP HIS SER SER HIS PRO ALA THR SEQRES 9 A 292 ASN VAL ASN HIS ALA ASN GLU TYR ASP LEU ASN VAL LYS SEQRES 10 A 292 GLY TRP LEU LEU GLN ASP GLU ASN TYR LYS ALA GLY ILE SEQRES 11 A 292 THR ALA GLY TYR GLN GLU THR ARG PHE SER TRP THR ALA SEQRES 12 A 292 THR GLY GLY SER TYR SER TYR ASN ASN GLY ALA TYR THR SEQRES 13 A 292 GLY ASN PHE PRO LYS GLY VAL ARG VAL ILE GLY TYR ASN SEQRES 14 A 292 GLN ARG PHE SER MET PRO TYR ILE GLY LEU ALA GLY GLN SEQRES 15 A 292 TYR ARG ILE ASN ASP PHE GLU LEU ASN ALA LEU PHE LYS SEQRES 16 A 292 PHE SER ASP TRP VAL ARG ALA HIS ASP ASN ASP GLU HIS SEQRES 17 A 292 TYR MET ARG ASP LEU THR PHE ARG GLU LYS THR SER GLY SEQRES 18 A 292 SER ARG TYR TYR GLY THR VAL ILE ASN ALA GLY TYR TYR SEQRES 19 A 292 VAL THR PRO ASN ALA LYS VAL PHE ALA GLU PHE THR TYR SEQRES 20 A 292 SER LYS TYR ASP GLU GLY LYS GLY GLY THR GLN THR ILE SEQRES 21 A 292 ASP LYS ASN SER GLY ASP SER VAL SER ILE GLY GLY ASP SEQRES 22 A 292 ALA ALA GLY ILE SER ASN LYS ASN TYR THR VAL THR ALA SEQRES 23 A 292 GLY LEU GLN TYR ARG PHE HET C8E A 295 15 HET C8E A 296 9 HET C8E A1293 20 HET C8E A1294 12 HET C8E A1295 13 HET C8E A1296 13 HET C8E A1297 12 HET C8E A1298 12 HET C8E A1299 9 HET C8E A1300 7 HET C8E A1301 6 HET C8E A1302 9 HET C8E A1303 7 HET C8E A1304 6 HET C8E A1305 11 HET C8E A1306 13 HET C8E A1307 11 HET C8E A1308 9 HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE FORMUL 2 C8E 18(C16 H34 O5) FORMUL 20 HOH *135(H2 O) HELIX 1 1 GLY A 271 ASP A 273 5 3 SHEET 1 AA14 PHE A 14 TYR A 32 0 SHEET 2 AA14 LYS A 39 TYR A 62 -1 N ILE A 40 O LEU A 31 SHEET 3 AA14 LEU A 65 SER A 74 -1 O LEU A 65 N TYR A 62 SHEET 4 AA14 ASP A 97 GLN A 122 -1 O ALA A 109 N SER A 74 SHEET 5 AA14 SER A 147 TYR A 150 -1 O SER A 147 N SER A 100 SHEET 6 AA14 TYR A 155 ASN A 158 -1 O TYR A 155 N TYR A 150 SHEET 7 AA14 GLY A 78 ASP A 86 1 O SER A 79 N LYS A 48 SHEET 8 AA14 TYR A 126 THR A 144 0 SHEET 9 AA14 ARG A 164 ILE A 185 0 SHEET 10 AA14 PHE A 188 HIS A 208 0 SHEET 11 AA14 LEU A 213 THR A 236 0 SHEET 12 AA14 ALA A 239 TYR A 250 0 SHEET 13 AA14 ALA A 275 ARG A 291 0 SHEET 14 AA14 PHE A 14 TYR A 32 -1 O VAL A 16 N TYR A 290 SITE 1 AC1 4 ALA A 132 GLY A 133 TYR A 134 C8E A1301 SITE 1 AC2 2 PRO A 61 TYR A 62 SITE 1 AC3 2 C8E A1295 C8E A1296 SITE 1 AC4 4 LEU A 53 SER A 74 TYR A 290 C8E A 295 SITE 1 AC5 7 LEU A 53 LYS A 54 GLY A 55 GLY A 71 SITE 2 AC5 7 GLU A 111 ARG A 138 C8E A 295 SITE 1 AC6 2 ALA A 69 TYR A 112 SITE 1 AC7 3 TYR A 62 LEU A 120 C8E A1307 SITE 1 AC8 3 THR A 20 ALA A 286 C8E A1302 SITE 1 AC9 2 TRP A 199 C8E A1293 SITE 1 BC1 5 THR A 20 GLY A 21 MET A 22 ALA A 51 SITE 2 BC1 5 C8E A1300 SITE 1 BC2 1 ASP A 198 SITE 1 BC3 4 GLY A 181 ALA A 192 PHE A 194 THR A 227 SITE 1 BC4 4 PHE A 14 ILE A 57 TRP A 59 LEU A 67 SITE 1 BC5 3 PHE A 64 TRP A 119 C8E A1298 SITE 1 BC6 3 SER A 41 PHE A 215 GLU A 217 CRYST1 140.241 140.241 130.502 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007131 0.004117 0.000000 0.00000 SCALE2 0.000000 0.008234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007663 0.00000 CONECT 2175 2176 CONECT 2176 2175 2177 CONECT 2177 2176 2178 CONECT 2178 2177 2179 CONECT 2179 2178 2180 CONECT 2180 2179 2181 CONECT 2181 2180 2182 CONECT 2182 2181 2183 CONECT 2183 2182 2184 CONECT 2184 2183 2185 CONECT 2185 2184 2186 CONECT 2186 2185 2187 CONECT 2187 2186 2188 CONECT 2188 2187 2189 CONECT 2189 2188 CONECT 2190 2191 CONECT 2191 2190 2192 CONECT 2192 2191 2193 CONECT 2193 2192 2194 CONECT 2194 2193 2195 CONECT 2195 2194 2196 CONECT 2196 2195 2197 CONECT 2197 2196 2198 CONECT 2198 2197 CONECT 2199 2200 CONECT 2200 2199 2201 CONECT 2201 2200 2202 CONECT 2202 2201 2203 CONECT 2203 2202 2204 CONECT 2204 2203 2205 CONECT 2205 2204 2206 CONECT 2206 2205 2207 CONECT 2207 2206 2208 CONECT 2208 2207 2209 CONECT 2209 2208 2210 CONECT 2210 2209 2211 CONECT 2211 2210 2212 CONECT 2212 2211 2213 CONECT 2213 2212 2214 CONECT 2214 2213 2215 CONECT 2215 2214 2216 CONECT 2216 2215 2217 CONECT 2217 2216 2218 CONECT 2218 2217 CONECT 2219 2220 CONECT 2220 2219 2221 CONECT 2221 2220 2222 CONECT 2222 2221 2223 CONECT 2223 2222 2224 CONECT 2224 2223 2225 CONECT 2225 2224 2226 CONECT 2226 2225 2227 CONECT 2227 2226 2228 CONECT 2228 2227 2229 CONECT 2229 2228 2230 CONECT 2230 2229 CONECT 2231 2232 CONECT 2232 2231 2233 CONECT 2233 2232 2234 CONECT 2234 2233 2235 CONECT 2235 2234 2236 CONECT 2236 2235 2237 CONECT 2237 2236 2238 CONECT 2238 2237 2239 CONECT 2239 2238 2240 CONECT 2240 2239 2241 CONECT 2241 2240 2242 CONECT 2242 2241 2243 CONECT 2243 2242 CONECT 2244 2245 CONECT 2245 2244 2246 CONECT 2246 2245 2247 CONECT 2247 2246 2248 CONECT 2248 2247 2249 CONECT 2249 2248 2250 CONECT 2250 2249 2251 CONECT 2251 2250 2252 CONECT 2252 2251 2253 CONECT 2253 2252 2254 CONECT 2254 2253 2255 CONECT 2255 2254 2256 CONECT 2256 2255 CONECT 2257 2258 CONECT 2258 2257 2259 CONECT 2259 2258 2260 CONECT 2260 2259 2261 CONECT 2261 2260 2262 CONECT 2262 2261 2263 CONECT 2263 2262 2264 CONECT 2264 2263 2265 CONECT 2265 2264 2266 CONECT 2266 2265 2267 CONECT 2267 2266 2268 CONECT 2268 2267 CONECT 2269 2270 CONECT 2270 2269 2271 CONECT 2271 2270 2272 CONECT 2272 2271 2273 CONECT 2273 2272 2274 CONECT 2274 2273 2275 CONECT 2275 2274 2276 CONECT 2276 2275 2277 CONECT 2277 2276 2278 CONECT 2278 2277 2279 CONECT 2279 2278 2280 CONECT 2280 2279 CONECT 2281 2282 CONECT 2282 2281 2283 CONECT 2283 2282 2284 CONECT 2284 2283 2285 CONECT 2285 2284 2286 CONECT 2286 2285 2287 CONECT 2287 2286 2288 CONECT 2288 2287 2289 CONECT 2289 2288 CONECT 2290 2291 CONECT 2291 2290 2292 CONECT 2292 2291 2293 CONECT 2293 2292 2294 CONECT 2294 2293 2295 CONECT 2295 2294 2296 CONECT 2296 2295 CONECT 2297 2298 CONECT 2298 2297 2299 CONECT 2299 2298 2300 CONECT 2300 2299 2301 CONECT 2301 2300 2302 CONECT 2302 2301 CONECT 2303 2304 CONECT 2304 2303 2305 CONECT 2305 2304 2306 CONECT 2306 2305 2307 CONECT 2307 2306 2308 CONECT 2308 2307 2309 CONECT 2309 2308 2310 CONECT 2310 2309 2311 CONECT 2311 2310 CONECT 2312 2313 CONECT 2313 2312 2314 CONECT 2314 2313 2315 CONECT 2315 2314 2316 CONECT 2316 2315 2317 CONECT 2317 2316 2318 CONECT 2318 2317 CONECT 2319 2320 CONECT 2320 2319 2321 CONECT 2321 2320 2322 CONECT 2322 2321 2323 CONECT 2323 2322 2324 CONECT 2324 2323 CONECT 2325 2326 CONECT 2326 2325 2327 CONECT 2327 2326 2328 CONECT 2328 2327 2329 CONECT 2329 2328 2330 CONECT 2330 2329 2331 CONECT 2331 2330 2332 CONECT 2332 2331 2333 CONECT 2333 2332 2334 CONECT 2334 2333 2335 CONECT 2335 2334 CONECT 2336 2337 CONECT 2337 2336 2338 CONECT 2338 2337 2339 CONECT 2339 2338 2340 CONECT 2340 2339 2341 CONECT 2341 2340 2342 CONECT 2342 2341 2343 CONECT 2343 2342 2344 CONECT 2344 2343 2345 CONECT 2345 2344 2346 CONECT 2346 2345 2347 CONECT 2347 2346 2348 CONECT 2348 2347 CONECT 2349 2350 CONECT 2350 2349 2351 CONECT 2351 2350 2352 CONECT 2352 2351 2353 CONECT 2353 2352 2354 CONECT 2354 2353 2355 CONECT 2355 2354 2356 CONECT 2356 2355 2357 CONECT 2357 2356 2358 CONECT 2358 2357 2359 CONECT 2359 2358 CONECT 2360 2361 CONECT 2361 2360 2362 CONECT 2362 2361 2363 CONECT 2363 2362 2364 CONECT 2364 2363 2365 CONECT 2365 2364 2366 CONECT 2366 2365 2367 CONECT 2367 2366 2368 CONECT 2368 2367 MASTER 477 0 18 1 14 0 17 6 2502 1 194 23 END