HEADER IMMUNE SYSTEM 05-FEB-10 2X57 TITLE CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN VASOACTIVE TITLE 2 INTESTINAL POLYPEPTIDE RECEPTOR 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 26-118; COMPND 5 SYNONYM: PITUITARY ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE TYPE III COMPND 6 RECEPTOR, PACAP TYPE III RECEPTOR, HELODERMIN-PREFERRING VIP COMPND 7 RECEPTOR, PACAP-R-3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS G-PROTEIN COUPLED RECEPTOR, CIRCADIAN RHYTHM, MALE REPRODUCTION, KEYWDS 2 HORMONE BINDING, GROWTH, RECEPTOR, TRANSDUCER, CLASS B GPCR, IMMUNE KEYWDS 3 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.C.W.PIKE,A.J.BARR,A.QUIGLEY,N.BURGESS BROWN,A.DE RISO,A.BULLOCK, AUTHOR 2 G.BERRIDGE,J.R.C.MUNIZ,A.CHAIKAUD,M.VOLLMAR,T.KROJER,E.UGOCHUKWU, AUTHOR 3 F.VON DELFT,A.EDWARDS,C.H.ARROWSMITH,J.WEIGELT,C.BOUNTRA, AUTHOR 4 E.P.CARPENTER REVDAT 4 20-NOV-24 2X57 1 LINK REVDAT 3 24-JAN-18 2X57 1 JRNL REVDAT 2 13-JUL-11 2X57 1 VERSN REVDAT 1 09-MAR-10 2X57 0 JRNL AUTH A.C.W.PIKE,A.J.BARR,A.QUIGLEY,N.BURGESS BROWN,A.DE RISO, JRNL AUTH 2 A.BULLOCK,G.BERRIDGE,J.R.C.MUNIZ,A.CHAIKAUD,M.VOLLMAR, JRNL AUTH 3 T.KROJER,E.UGOCHUKWU,F.VON DELFT,A.EDWARDS,C.H.ARROWSMITH, JRNL AUTH 4 J.WEIGELT,C.BOUNTRA,E.P.CARPENTER JRNL TITL CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN JRNL TITL 2 VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.793 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2514 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1679 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3421 ; 1.347 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4073 ; 1.337 ; 3.009 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 5.943 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;45.854 ;25.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;14.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.382 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2832 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 512 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 545 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1586 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1263 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1294 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.117 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.053 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1548 ; 3.679 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 625 ; 1.211 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2507 ; 5.979 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 966 ; 8.544 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 914 ;12.093 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 16 A 20 5 REMARK 3 1 B 16 B 20 5 REMARK 3 1 C 16 C 20 5 REMARK 3 2 A 22 A 24 5 REMARK 3 2 B 22 B 24 5 REMARK 3 2 C 22 C 24 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 47 ; 0.09 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 47 ; 0.10 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 47 ; 0.11 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 51 ; 0.16 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 51 ; 0.13 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 51 ; 0.17 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 47 ; 1.49 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 47 ; 1.90 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 47 ; 1.21 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 51 ; 1.66 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 51 ; 1.62 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 51 ; 1.35 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 7 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 25 A 28 5 REMARK 3 1 B 25 B 28 5 REMARK 3 1 C 25 C 28 5 REMARK 3 2 A 29 A 32 1 REMARK 3 2 B 29 B 32 1 REMARK 3 2 C 29 C 32 1 REMARK 3 3 A 34 A 44 1 REMARK 3 3 B 34 B 44 1 REMARK 3 3 C 34 C 44 1 REMARK 3 4 A 45 A 50 6 REMARK 3 4 B 45 B 50 6 REMARK 3 4 C 45 C 50 6 REMARK 3 5 A 51 A 56 1 REMARK 3 5 B 51 B 56 1 REMARK 3 5 C 51 C 56 1 REMARK 3 6 A 58 A 59 6 REMARK 3 6 B 58 B 59 6 REMARK 3 6 C 58 C 59 6 REMARK 3 7 A 60 A 65 4 REMARK 3 7 B 60 B 65 4 REMARK 3 7 C 60 C 65 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 277 ; 0.23 ; 0.05 REMARK 3 TIGHT POSITIONAL 2 B (A): 277 ; 0.23 ; 0.05 REMARK 3 TIGHT POSITIONAL 2 C (A): 277 ; 0.26 ; 0.05 REMARK 3 MEDIUM POSITIONAL 2 A (A): 114 ; 0.34 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 114 ; 0.29 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 C (A): 114 ; 0.29 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 A (A): 152 ; 0.53 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 B (A): 152 ; 0.57 ; 5.00 REMARK 3 LOOSE POSITIONAL 2 C (A): 152 ; 0.61 ; 5.00 REMARK 3 TIGHT THERMAL 2 A (A**2): 277 ; 1.36 ; 0.50 REMARK 3 TIGHT THERMAL 2 B (A**2): 277 ; 1.21 ; 0.50 REMARK 3 TIGHT THERMAL 2 C (A**2): 277 ; 1.23 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 114 ; 1.19 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 114 ; 1.41 ; 2.00 REMARK 3 MEDIUM THERMAL 2 C (A**2): 114 ; 1.21 ; 2.00 REMARK 3 LOOSE THERMAL 2 A (A**2): 152 ; 1.09 ; 10.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 152 ; 1.19 ; 10.00 REMARK 3 LOOSE THERMAL 2 C (A**2): 152 ; 1.22 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 68 A 76 1 REMARK 3 1 B 68 B 76 1 REMARK 3 1 C 68 C 76 1 REMARK 3 2 A 89 A 90 1 REMARK 3 2 B 89 B 90 1 REMARK 3 2 C 89 C 90 1 REMARK 3 3 A 92 A 93 1 REMARK 3 3 B 92 B 93 1 REMARK 3 3 C 92 C 93 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 147 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 3 B (A): 147 ; 0.07 ; 0.05 REMARK 3 TIGHT POSITIONAL 3 C (A): 147 ; 0.05 ; 0.05 REMARK 3 TIGHT THERMAL 3 A (A**2): 147 ; 0.21 ; 0.50 REMARK 3 TIGHT THERMAL 3 B (A**2): 147 ; 0.27 ; 0.50 REMARK 3 TIGHT THERMAL 3 C (A**2): 147 ; 0.24 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 94 A 95 2 REMARK 3 1 B 94 B 95 2 REMARK 3 1 C 94 C 95 2 REMARK 3 2 A 97 A 97 4 REMARK 3 2 B 97 B 97 4 REMARK 3 2 C 97 C 97 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 A (A): 12 ; 0.07 ; 0.05 REMARK 3 TIGHT POSITIONAL 4 B (A): 12 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 4 C (A): 12 ; 0.06 ; 0.05 REMARK 3 MEDIUM POSITIONAL 4 A (A): 15 ; 0.24 ; 0.50 REMARK 3 MEDIUM POSITIONAL 4 B (A): 15 ; 0.26 ; 0.50 REMARK 3 MEDIUM POSITIONAL 4 C (A): 15 ; 0.15 ; 0.50 REMARK 3 TIGHT THERMAL 4 A (A**2): 12 ; 1.40 ; 0.50 REMARK 3 TIGHT THERMAL 4 B (A**2): 12 ; 1.22 ; 0.50 REMARK 3 TIGHT THERMAL 4 C (A**2): 12 ; 1.41 ; 0.50 REMARK 3 MEDIUM THERMAL 4 A (A**2): 15 ; 1.72 ; 2.00 REMARK 3 MEDIUM THERMAL 4 B (A**2): 15 ; 1.46 ; 2.00 REMARK 3 MEDIUM THERMAL 4 C (A**2): 15 ; 1.54 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 98 A 111 2 REMARK 3 1 C 98 C 111 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 5 A (A): 82 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 5 C (A): 82 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 5 A (A): 104 ; 0.05 ; 0.50 REMARK 3 MEDIUM POSITIONAL 5 C (A): 104 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 5 A (A**2): 82 ; 0.20 ; 0.50 REMARK 3 TIGHT THERMAL 5 C (A**2): 82 ; 0.20 ; 0.50 REMARK 3 MEDIUM THERMAL 5 A (A**2): 104 ; 0.22 ; 2.00 REMARK 3 MEDIUM THERMAL 5 C (A**2): 104 ; 0.22 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5111 0.4955 -13.8984 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1133 REMARK 3 T33: 0.0697 T12: -0.0420 REMARK 3 T13: 0.0469 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 2.1528 L22: 2.1211 REMARK 3 L33: 5.4756 L12: 0.2464 REMARK 3 L13: 0.0520 L23: 0.1672 REMARK 3 S TENSOR REMARK 3 S11: 0.1211 S12: -0.4405 S13: 0.1771 REMARK 3 S21: 0.2694 S22: 0.0489 S23: -0.0987 REMARK 3 S31: -0.1748 S32: 0.0677 S33: -0.1700 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6107 -2.4020 -40.1620 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.0434 REMARK 3 T33: 0.0431 T12: -0.0081 REMARK 3 T13: 0.0168 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.6525 L22: 3.9732 REMARK 3 L33: 0.8400 L12: -1.6959 REMARK 3 L13: 0.7911 L23: -1.6229 REMARK 3 S TENSOR REMARK 3 S11: 0.0921 S12: 0.1935 S13: -0.0137 REMARK 3 S21: -0.3301 S22: -0.0761 S23: -0.1404 REMARK 3 S31: 0.1509 S32: 0.0728 S33: -0.0161 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 12 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5291 -16.9331 -22.5056 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.0285 REMARK 3 T33: 0.1880 T12: -0.0070 REMARK 3 T13: -0.0226 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.6213 L22: 2.8687 REMARK 3 L33: 0.4438 L12: -1.2925 REMARK 3 L13: -0.1114 L23: 0.8525 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.1659 S13: -0.0023 REMARK 3 S21: 0.1155 S22: 0.0948 S23: -0.4729 REMARK 3 S31: 0.0033 S32: 0.0339 S33: -0.0676 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY. REMARK 4 REMARK 4 2X57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9809, 0.9799 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31377 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 58.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG300 0.1M CITRATE PHOSPHATE REMARK 280 PH4.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.17000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.85000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.08500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.85000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.25500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.85000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.85000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.08500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.85000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.85000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.25500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.17000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -52.17000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLU A 115 REMARK 465 ASP A 116 REMARK 465 GLU A 117 REMARK 465 SER A 118 REMARK 465 MSE B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 GLU B 115 REMARK 465 ASP B 116 REMARK 465 GLU B 117 REMARK 465 SER B 118 REMARK 465 MSE C -22 REMARK 465 HIS C -21 REMARK 465 HIS C -20 REMARK 465 HIS C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 SER C -15 REMARK 465 SER C -14 REMARK 465 GLU C 115 REMARK 465 ASP C 116 REMARK 465 GLU C 117 REMARK 465 SER C 118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 77 CE NZ REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 LYS C 48 CD CE NZ REMARK 470 LYS C 77 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B -7 O HOH B 2006 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 49 79.31 47.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 2X57 A -22 0 PDB 2X57 2X57 -22 0 DBREF 2X57 A 26 118 UNP P41587 VIPR2_HUMAN 26 118 DBREF 2X57 B -22 0 PDB 2X57 2X57 -22 0 DBREF 2X57 B 26 118 UNP P41587 VIPR2_HUMAN 26 118 DBREF 2X57 C -22 0 PDB 2X57 2X57 -22 0 DBREF 2X57 C 26 118 UNP P41587 VIPR2_HUMAN 26 118 SEQRES 1 A 116 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 116 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ARG PHE HIS SEQRES 3 A 116 LEU GLU ILE GLN GLU GLU GLU THR LYS CYS ALA GLU LEU SEQRES 4 A 116 LEU ARG SER GLN THR GLU LYS HIS LYS ALA CYS SER GLY SEQRES 5 A 116 VAL TRP ASP ASN ILE THR CYS TRP ARG PRO ALA ASN VAL SEQRES 6 A 116 GLY GLU THR VAL THR VAL PRO CYS PRO LYS VAL PHE SER SEQRES 7 A 116 ASN PHE TYR SER LYS ALA GLY ASN ILE SER LYS ASN CYS SEQRES 8 A 116 THR SER ASP GLY TRP SER GLU THR PHE PRO ASP PHE VAL SEQRES 9 A 116 ASP ALA CYS GLY TYR SER ASP PRO GLU ASP GLU SER SEQRES 1 B 116 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 116 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ARG PHE HIS SEQRES 3 B 116 LEU GLU ILE GLN GLU GLU GLU THR LYS CYS ALA GLU LEU SEQRES 4 B 116 LEU ARG SER GLN THR GLU LYS HIS LYS ALA CYS SER GLY SEQRES 5 B 116 VAL TRP ASP ASN ILE THR CYS TRP ARG PRO ALA ASN VAL SEQRES 6 B 116 GLY GLU THR VAL THR VAL PRO CYS PRO LYS VAL PHE SER SEQRES 7 B 116 ASN PHE TYR SER LYS ALA GLY ASN ILE SER LYS ASN CYS SEQRES 8 B 116 THR SER ASP GLY TRP SER GLU THR PHE PRO ASP PHE VAL SEQRES 9 B 116 ASP ALA CYS GLY TYR SER ASP PRO GLU ASP GLU SER SEQRES 1 C 116 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 116 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ARG PHE HIS SEQRES 3 C 116 LEU GLU ILE GLN GLU GLU GLU THR LYS CYS ALA GLU LEU SEQRES 4 C 116 LEU ARG SER GLN THR GLU LYS HIS LYS ALA CYS SER GLY SEQRES 5 C 116 VAL TRP ASP ASN ILE THR CYS TRP ARG PRO ALA ASN VAL SEQRES 6 C 116 GLY GLU THR VAL THR VAL PRO CYS PRO LYS VAL PHE SER SEQRES 7 C 116 ASN PHE TYR SER LYS ALA GLY ASN ILE SER LYS ASN CYS SEQRES 8 C 116 THR SER ASP GLY TRP SER GLU THR PHE PRO ASP PHE VAL SEQRES 9 C 116 ASP ALA CYS GLY TYR SER ASP PRO GLU ASP GLU SER MODRES 2X57 MSE A 0 MET SELENOMETHIONINE MODRES 2X57 MSE B 0 MET SELENOMETHIONINE MODRES 2X57 MSE C 0 MET SELENOMETHIONINE HET MSE A 0 8 HET MSE B 0 8 HET MSE C 0 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 4 HOH *137(H2 O) HELIX 1 1 GLY A -9 GLN A 45 1 30 HELIX 2 2 PRO A 76 PHE A 82 5 7 HELIX 3 3 ASP A 104 GLY A 110 1 7 HELIX 4 4 SER B -14 GLY B -9 1 6 HELIX 5 5 GLY B -9 SER B -1 1 9 HELIX 6 6 MSE B 0 GLN B 45 1 21 HELIX 7 7 THR B 46 HIS B 49 5 4 HELIX 8 8 PRO B 76 PHE B 82 5 7 HELIX 9 9 ASP B 104 GLY B 110 1 7 HELIX 10 10 GLY C -9 GLN C 45 1 30 HELIX 11 11 PRO C 76 PHE C 82 5 7 HELIX 12 12 ASP C 104 GLY C 110 1 7 SHEET 1 AA 2 VAL A 55 ASP A 57 0 SHEET 2 AA 2 THR A 60 TRP A 62 -1 O THR A 60 N ASP A 57 SHEET 1 AB 3 THR A 70 PRO A 74 0 SHEET 2 AB 3 ASN A 88 THR A 94 -1 O ILE A 89 N VAL A 73 SHEET 3 AB 3 GLY A 97 TRP A 98 -1 O GLY A 97 N THR A 94 SHEET 1 BA 2 VAL B 55 ASP B 57 0 SHEET 2 BA 2 THR B 60 TRP B 62 -1 O THR B 60 N ASP B 57 SHEET 1 BB 3 THR B 70 PRO B 74 0 SHEET 2 BB 3 ASN B 88 THR B 94 -1 O ILE B 89 N VAL B 73 SHEET 3 BB 3 GLY B 97 TRP B 98 -1 O GLY B 97 N THR B 94 SHEET 1 CA 2 VAL C 55 ASP C 57 0 SHEET 2 CA 2 THR C 60 TRP C 62 -1 O THR C 60 N ASP C 57 SHEET 1 CB 3 THR C 70 PRO C 74 0 SHEET 2 CB 3 ASN C 88 THR C 94 -1 O ILE C 89 N VAL C 73 SHEET 3 CB 3 GLY C 97 TRP C 98 -1 O GLY C 97 N THR C 94 SSBOND 1 CYS A 38 CYS A 61 1555 1555 2.13 SSBOND 2 CYS A 52 CYS A 93 1555 1555 2.05 SSBOND 3 CYS A 75 CYS A 109 1555 1555 2.02 SSBOND 4 CYS B 38 CYS B 61 1555 1555 2.14 SSBOND 5 CYS B 52 CYS B 93 1555 1555 2.01 SSBOND 6 CYS B 75 CYS B 109 1555 1555 1.96 SSBOND 7 CYS C 38 CYS C 61 1555 1555 2.13 SSBOND 8 CYS C 52 CYS C 93 1555 1555 2.02 SSBOND 9 CYS C 75 CYS C 109 1555 1555 2.02 LINK C SER A -1 N MSE A 0 1555 1555 1.32 LINK C MSE A 0 N ARG A 26 1555 1555 1.31 LINK C SER B -1 N MSE B 0 1555 1555 1.32 LINK C MSE B 0 N ARG B 26 1555 1555 1.33 LINK C SER C -1 N MSE C 0 1555 1555 1.32 LINK C MSE C 0 N ARG C 26 1555 1555 1.32 CISPEP 1 PHE A 102 PRO A 103 0 -13.54 CISPEP 2 PHE B 102 PRO B 103 0 -3.79 CISPEP 3 PHE C 102 PRO C 103 0 -8.68 CRYST1 99.700 99.700 104.340 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010030 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009584 0.00000