HEADER VIRAL PROTEIN 08-FEB-10 2X5G TITLE CRYSTAL STRUCTURE OF THE ORF131L51M MUTANT FROM SULFOLOBUS ISLANDICUS TITLE 2 RUDIVIRUS 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF 131; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRUNCATED VERSION, RESIDUES 1-96; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN 131, CAG38830; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS RUDIVIRUS 1; SOURCE 3 ORGANISM_TAXID: 282066; SOURCE 4 VARIANT: XX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,J.H.NAISMITH,M.F.WHITE REVDAT 3 06-NOV-24 2X5G 1 REMARK LINK REVDAT 2 23-AUG-17 2X5G 1 REMARK REVDAT 1 21-JUL-10 2X5G 0 JRNL AUTH M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,X.YAN, JRNL AUTH 2 M.KEROU,N.D.WEIKART,N.KADI,M.A.SHEIKH,S.SCHMELZ,M.DORWARD, JRNL AUTH 3 M.ZAWADZKI,C.COZENS,H.FALCONER,H.POWERS,I.M.OVERTON, JRNL AUTH 4 C.A.J.VAN NIEKERK,X.PENG,P.PATEL,R.A.GARRETT,D.PRANGISHVILI, JRNL AUTH 5 C.H.BOTTING,P.J.COOTE,D.T.F.DRYDEN,G.J.BARTON, JRNL AUTH 6 U.SCHWARZ-LINEK,G.L.CHALLIS,G.L.TAYLOR,M.F.WHITE, JRNL AUTH 7 J.H.NAISMITH JRNL TITL THE SCOTTISH STRUCTURAL PROTEOMICS FACILITY: TARGETS, JRNL TITL 2 METHODS AND OUTPUTS. JRNL REF J.STRUCT.FUNCT.GENOM. V. 11 167 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20419351 JRNL DOI 10.1007/S10969-010-9090-Y REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 9346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3129 - 2.8838 0.99 3044 159 0.2012 0.2229 REMARK 3 2 2.8838 - 2.2895 1.00 2959 157 0.2057 0.2716 REMARK 3 3 2.2895 - 2.0002 0.98 2886 141 0.2548 0.3545 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 55.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 0.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22180 REMARK 3 B22 (A**2) : 1.22180 REMARK 3 B33 (A**2) : -2.44370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 791 REMARK 3 ANGLE : 1.741 1061 REMARK 3 CHIRALITY : 0.100 120 REMARK 3 PLANARITY : 0.018 136 REMARK 3 DIHEDRAL : 18.056 322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:23) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0236 24.2474 -1.8271 REMARK 3 T TENSOR REMARK 3 T11: 0.5128 T22: 0.6068 REMARK 3 T33: 0.3857 T12: 0.2068 REMARK 3 T13: -0.0217 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 1.1566 L22: 2.4520 REMARK 3 L33: 2.4827 L12: -1.2207 REMARK 3 L13: 0.1830 L23: 0.2480 REMARK 3 S TENSOR REMARK 3 S11: 0.1478 S12: 0.3519 S13: -0.1344 REMARK 3 S21: -0.0799 S22: -0.3216 S23: 0.4580 REMARK 3 S31: -0.5250 S32: -1.5169 S33: 0.1126 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 24:57) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7093 23.7049 7.6402 REMARK 3 T TENSOR REMARK 3 T11: 0.3319 T22: 0.3652 REMARK 3 T33: 0.4018 T12: 0.0274 REMARK 3 T13: 0.0793 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 2.8962 L22: 3.2916 REMARK 3 L33: 2.1678 L12: -0.6389 REMARK 3 L13: -0.6293 L23: 2.0683 REMARK 3 S TENSOR REMARK 3 S11: 0.4343 S12: -0.0672 S13: 0.0099 REMARK 3 S21: -0.3209 S22: -0.3463 S23: -0.3566 REMARK 3 S31: -0.2493 S32: 0.0020 S33: -0.0895 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 58:68) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4326 29.2306 18.1822 REMARK 3 T TENSOR REMARK 3 T11: 0.3709 T22: 0.3120 REMARK 3 T33: 0.5829 T12: 0.0100 REMARK 3 T13: 0.0857 T23: 0.1634 REMARK 3 L TENSOR REMARK 3 L11: 3.6643 L22: 4.1153 REMARK 3 L33: 3.5689 L12: 1.2205 REMARK 3 L13: -0.7205 L23: 0.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.3348 S12: 0.0860 S13: 1.0164 REMARK 3 S21: 0.9888 S22: 0.3132 S23: 1.2179 REMARK 3 S31: -0.3896 S32: 0.5646 S33: -0.0219 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 69:86) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5269 15.8379 7.0907 REMARK 3 T TENSOR REMARK 3 T11: 0.3300 T22: 0.2589 REMARK 3 T33: 0.3875 T12: 0.0199 REMARK 3 T13: -0.0156 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 1.0041 L22: 0.4841 REMARK 3 L33: 4.9303 L12: 0.5460 REMARK 3 L13: 0.7524 L23: -0.3166 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: 0.0324 S13: -0.3136 REMARK 3 S21: 0.1648 S22: -0.1695 S23: -0.0040 REMARK 3 S31: 1.0621 S32: 0.4487 S33: 0.0858 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 87:95) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0004 22.4015 -6.3796 REMARK 3 T TENSOR REMARK 3 T11: 0.5384 T22: 0.4231 REMARK 3 T33: 0.4251 T12: -0.0904 REMARK 3 T13: 0.0704 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.5524 L22: 2.7121 REMARK 3 L33: 3.3865 L12: -0.4384 REMARK 3 L13: -0.6592 L23: 1.1990 REMARK 3 S TENSOR REMARK 3 S11: 0.6312 S12: 0.3516 S13: -0.0818 REMARK 3 S21: -0.6675 S22: -0.1146 S23: -0.5891 REMARK 3 S31: -1.1814 S32: 0.2387 S33: -0.1107 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 1:1) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1001 30.0093 20.4145 REMARK 3 T TENSOR REMARK 3 T11: 0.3376 T22: 0.4785 REMARK 3 T33: 0.3540 T12: -0.0505 REMARK 3 T13: 0.0544 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: -0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 0.0000 S13:-969457.3228 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 969457.3 S32: 0.0000 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 2:2) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4005 11.7006 -3.3619 REMARK 3 T TENSOR REMARK 3 T11: 1.6143 T22: 0.8301 REMARK 3 T33: 0.8203 T12: -0.1225 REMARK 3 T13: -0.1316 T23: -0.4517 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 3:3) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8215 19.3110 11.3029 REMARK 3 T TENSOR REMARK 3 T11: 0.5362 T22: 0.3953 REMARK 3 T33: 0.5810 T12: 0.0356 REMARK 3 T13: -0.0272 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN D AND RESID 201:201) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0289 11.4827 7.4627 REMARK 3 T TENSOR REMARK 3 T11: 1.4523 T22: 0.5054 REMARK 3 T33: 0.4850 T12: -0.1431 REMARK 3 T13: 0.2271 T23: -0.2562 REMARK 3 L TENSOR REMARK 3 L11: 1.9999 L22: 2.0003 REMARK 3 L33: 7.9326 L12: 1.4676 REMARK 3 L13: 7.4126 L23: -5.8448 REMARK 3 S TENSOR REMARK 3 S11: -0.2674 S12: 0.4869 S13: 0.3079 REMARK 3 S21: -0.1584 S22: 0.1296 S23: 0.0109 REMARK 3 S31: -0.1087 S32: -0.3297 S33: -0.0429 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN D AND RESID 202:202) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1509 14.2030 5.8105 REMARK 3 T TENSOR REMARK 3 T11: 1.2966 T22: 1.2288 REMARK 3 T33: 0.4957 T12: -0.2041 REMARK 3 T13: -0.1272 T23: 0.1756 REMARK 3 L TENSOR REMARK 3 L11: 2.0001 L22: 1.9994 REMARK 3 L33: 1.9999 L12: 1.9992 REMARK 3 L13: -5.0659 L23: 1.9995 REMARK 3 S TENSOR REMARK 3 S11: 1.1368 S12: 3.5836 S13: -2.4829 REMARK 3 S21: -5.1618 S22: -0.7493 S23: 1.0856 REMARK 3 S31: 2.6255 S32: 0.8580 S33: -0.4184 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290036220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXDE, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M SODIUM MALONATE AND REMARK 280 CRYOPROTECTED WITH 2.4 M MALONATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.70433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.40867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.40867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.70433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 87.67950 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 50.62178 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 22.70433 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2003 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 51 TO MSE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLN A 43 REMARK 465 ASP A 44 REMARK 465 GLY A 45 REMARK 465 ARG A 96 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 33 -36.05 -139.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1096 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1097 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1098 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1099 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1100 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X5H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ORF131 L26M L51M DOUBLE MUTANT FROM REMARK 900 SULFOLOBUS ISLANDICUS RUDIVIRUS 1 DBREF 2X5G A 1 96 UNP Q8QL44 Y131_SIRV1 1 96 SEQADV 2X5G MSE A 51 UNP Q8QL44 LEU 51 ENGINEERED MUTATION SEQRES 1 A 96 GLY ALA SER LEU LYS GLU ILE ILE ASP GLU LEU GLY LYS SEQRES 2 A 96 GLN ALA LYS GLU GLN ASN LYS ILE ALA SER ARG ILE LEU SEQRES 3 A 96 LYS ILE LYS GLY ILE LYS ARG ILE VAL VAL GLN LEU ASN SEQRES 4 A 96 ALA VAL PRO GLN ASP GLY LYS ILE ARG TYR SER MSE THR SEQRES 5 A 96 ILE HIS SER GLN ASN ASN PHE ARG LYS GLN ILE GLY ILE SEQRES 6 A 96 THR PRO GLN ASP ALA GLU ASP LEU LYS LEU ILE ALA GLU SEQRES 7 A 96 PHE LEU GLU LYS TYR SER ASP PHE LEU ASN GLU TYR VAL SEQRES 8 A 96 LYS PHE THR PRO ARG MODRES 2X5G MSE A 51 MET SELENOMETHIONINE HET MSE A 51 13 HET CL A1096 1 HET CL A1097 1 HET CL A1098 1 HET MLI A1099 7 HET MLI A1100 7 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM MLI MALONATE ION FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 CL 3(CL 1-) FORMUL 5 MLI 2(C3 H2 O4 2-) FORMUL 7 HOH *27(H2 O) HELIX 1 1 SER A 3 ASN A 19 1 17 HELIX 2 2 THR A 66 GLN A 68 5 3 HELIX 3 3 ASP A 69 VAL A 91 1 23 SHEET 1 AA 3 ALA A 22 LEU A 26 0 SHEET 2 AA 3 ILE A 34 VAL A 41 -1 O VAL A 36 N LEU A 26 SHEET 3 AA 3 ARG A 48 SER A 55 -1 O ARG A 48 N VAL A 41 LINK C SER A 50 N MSE A 51 1555 1555 1.31 LINK C MSE A 51 N THR A 52 1555 1555 1.31 SITE 1 AC1 3 ARG A 33 SER A 55 GLY A 64 SITE 1 AC2 5 PHE A 59 LYS A 82 TYR A 83 ASP A 85 SITE 2 AC2 5 PHE A 86 SITE 1 AC3 3 LEU A 26 VAL A 36 HOH A2006 SITE 1 AC4 7 ILE A 28 LYS A 29 PHE A 79 LYS A 82 SITE 2 AC4 7 MLI A1100 HOH A2007 HOH A2019 SITE 1 AC5 7 ALA A 2 LEU A 4 ILE A 7 LEU A 26 SITE 2 AC5 7 LYS A 27 PHE A 79 MLI A1099 CRYST1 58.453 58.453 68.113 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017108 0.009877 0.000000 0.00000 SCALE2 0.000000 0.019754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014681 0.00000