HEADER TRANSFERASE 10-FEB-10 2X5S TITLE CRYSTAL STRUCTURE OF T. MARITIMA GDP-MANNOSE PYROPHOSPHORYLASE IN APO TITLE 2 STATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GDP-MANNOSE PYROPHOSPHORYLASE; COMPND 5 EC: 2.7.7.13; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 ATCC: 43589; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ORIGAMI (DE3) PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMH1; SOURCE 12 OTHER_DETAILS: DSM 3109 KEYWDS TRANSFERASE, NUCLEOTIDYL TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.PELISSIER,S.LESLEY,P.KUHN,Y.BOURNE REVDAT 5 20-DEC-23 2X5S 1 SHEET REVDAT 4 16-OCT-19 2X5S 1 REMARK REVDAT 3 01-SEP-10 2X5S 1 JRNL REVDAT 2 07-JUL-10 2X5S 1 JRNL REVDAT 1 23-JUN-10 2X5S 0 JRNL AUTH M.C.PELISSIER,S.LESLEY,P.KUHN,Y.BOURNE JRNL TITL STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF JRNL TITL 2 BACTERIAL GUANOSINE-DIPHOSPHO-D-MANNOSE PYROPHOSPHORYLASE JRNL TITL 3 AND ITS REGULATION BY DIVALENT IONS. JRNL REF J.BIOL.CHEM. V. 285 27468 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20573954 JRNL DOI 10.1074/JBC.M109.095182 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 30129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1602 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.18000 REMARK 3 B22 (A**2) : 4.94000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.429 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.251 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.518 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5487 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3845 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7421 ; 1.154 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9412 ; 0.787 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 664 ; 5.911 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;35.133 ;24.694 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1016 ;15.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;14.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 821 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5966 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1068 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3330 ; 0.416 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1328 ; 0.073 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5422 ; 0.797 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2157 ; 1.217 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1999 ; 2.008 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6595 27.9465 -12.9762 REMARK 3 T TENSOR REMARK 3 T11: 0.1992 T22: 0.0524 REMARK 3 T33: 0.2907 T12: -0.0228 REMARK 3 T13: 0.0133 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 7.0955 L22: 3.5447 REMARK 3 L33: 6.1629 L12: 0.6942 REMARK 3 L13: -1.4298 L23: -1.5888 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: 0.4830 S13: 0.6877 REMARK 3 S21: -0.2679 S22: 0.0459 S23: 0.0613 REMARK 3 S31: -0.3939 S32: -0.2499 S33: -0.0684 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): -42.9732 15.2779 21.0780 REMARK 3 T TENSOR REMARK 3 T11: 0.3412 T22: 0.5919 REMARK 3 T33: 0.3372 T12: -0.1640 REMARK 3 T13: 0.0492 T23: -0.3026 REMARK 3 L TENSOR REMARK 3 L11: 6.6446 L22: 1.9056 REMARK 3 L33: 6.2051 L12: 1.3235 REMARK 3 L13: -3.4888 L23: -0.8977 REMARK 3 S TENSOR REMARK 3 S11: 0.6572 S12: -1.9455 S13: 0.8986 REMARK 3 S21: 0.7232 S22: -0.3152 S23: 0.0983 REMARK 3 S31: -0.4533 S32: 1.0584 S33: -0.3420 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 199 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9063 8.7244 -16.6478 REMARK 3 T TENSOR REMARK 3 T11: 0.3348 T22: 0.1772 REMARK 3 T33: 0.3658 T12: -0.0010 REMARK 3 T13: 0.0315 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 3.5760 L22: 4.5024 REMARK 3 L33: 7.5282 L12: -2.1711 REMARK 3 L13: -0.2478 L23: -0.0545 REMARK 3 S TENSOR REMARK 3 S11: 0.1602 S12: 0.4888 S13: -0.9183 REMARK 3 S21: -0.5703 S22: -0.2333 S23: 0.4418 REMARK 3 S31: 1.0780 S32: -0.1105 S33: 0.0731 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): -50.5721 -1.6922 10.6978 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.1365 REMARK 3 T33: 0.2069 T12: 0.0231 REMARK 3 T13: 0.0464 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 6.7874 L22: 6.6772 REMARK 3 L33: 5.4736 L12: 3.2191 REMARK 3 L13: -3.2984 L23: -1.4168 REMARK 3 S TENSOR REMARK 3 S11: -0.5112 S12: -0.3490 S13: -0.9492 REMARK 3 S21: -0.2586 S22: 0.2206 S23: -0.5036 REMARK 3 S31: 0.9012 S32: 0.4811 S33: 0.2906 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2010 16.8127 -13.5974 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.0863 REMARK 3 T33: 0.2111 T12: -0.0463 REMARK 3 T13: -0.0298 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 9.1305 L22: 1.4234 REMARK 3 L33: 3.4389 L12: 1.1362 REMARK 3 L13: -3.8116 L23: -1.1076 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: 0.8109 S13: 0.1988 REMARK 3 S21: -0.3987 S22: 0.1526 S23: 0.0269 REMARK 3 S31: -0.1448 S32: -0.2831 S33: -0.0851 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 200 B 333 REMARK 3 ORIGIN FOR THE GROUP (A): -34.7659 6.2399 14.3435 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.3867 REMARK 3 T33: 0.1597 T12: 0.0100 REMARK 3 T13: -0.0253 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 9.5448 L22: 1.7434 REMARK 3 L33: 2.6807 L12: 2.4290 REMARK 3 L13: -3.9322 L23: -0.9357 REMARK 3 S TENSOR REMARK 3 S11: 0.1235 S12: -1.6237 S13: -0.2355 REMARK 3 S21: 0.4799 S22: -0.3947 S23: -0.0675 REMARK 3 S31: -0.0250 S32: 0.5548 S33: 0.2711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. REMARK 4 REMARK 4 2X5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31744 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 65.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CU2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM PCB PH 7.5, 35% (V/V) MPD, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.49950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 1 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 261 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, MET 1 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN B, VAL 261 TO LEU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 334 REMARK 465 THR A 335 REMARK 465 SER A 336 REMARK 465 ARG B 334 REMARK 465 THR B 335 REMARK 465 SER B 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 PRO A 172 CG CD REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 VAL A 181 CG1 CG2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 PRO B 172 CG CD REMARK 470 ASP B 173 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 208 NZ LYS A 245 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 2 131.24 174.30 REMARK 500 LYS A 29 68.60 -103.87 REMARK 500 ASN A 85 -168.70 59.87 REMARK 500 ASP A 133 -162.06 61.99 REMARK 500 VAL A 242 -56.33 -133.22 REMARK 500 HIS A 293 -83.14 -129.09 REMARK 500 LEU B 69 67.11 -118.55 REMARK 500 ASN B 85 -167.55 71.75 REMARK 500 ASP B 133 -163.51 57.87 REMARK 500 LYS B 171 122.05 -38.00 REMARK 500 SER B 210 -54.19 -29.94 REMARK 500 ASN B 222 95.53 -60.46 REMARK 500 ILE B 236 123.71 -178.08 REMARK 500 VAL B 242 -51.15 -120.66 REMARK 500 HIS B 293 -87.42 -116.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X65 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF T. MARITIMA GDP-MANNOSE PYROPHOSPHORYLASE IN REMARK 900 COMPLEX WITH MANNOSE-1 -PHOSPHATE. REMARK 900 RELATED ID: 2X5Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF T. MARITIMA GDP-MANNOSE PYROPHOSPHORYLASE IN REMARK 900 COMPLEX WITH GDP- MANNOSE. REMARK 900 RELATED ID: 2X60 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF T. MARITIMA GDP-MANNOSE PYROPHOSPHORYLASE IN REMARK 900 COMPLEX WITH GTP. DBREF 2X5S A 1 336 UNP Q9X0C3 Q9X0C3_THEMA 1 336 DBREF 2X5S B 1 336 UNP Q9X0C3 Q9X0C3_THEMA 1 336 SEQADV 2X5S VAL A 1 UNP Q9X0C3 MET 1 ENGINEERED MUTATION SEQADV 2X5S LEU A 261 UNP Q9X0C3 VAL 261 ENGINEERED MUTATION SEQADV 2X5S VAL B 1 UNP Q9X0C3 MET 1 ENGINEERED MUTATION SEQADV 2X5S LEU B 261 UNP Q9X0C3 VAL 261 ENGINEERED MUTATION SEQRES 1 A 336 VAL MET LYS ALA LEU ILE LEU ALA GLY GLY SER GLY GLU SEQRES 2 A 336 ARG PHE TRP PRO LEU SER THR PRO GLU THR PRO LYS GLN SEQRES 3 A 336 PHE LEU LYS LEU PHE GLY ASN LYS SER LEU MET ARG TRP SEQRES 4 A 336 THR PHE GLU ARG VAL LEU GLU GLU MET ASP PRO LYS ASP SEQRES 5 A 336 VAL ILE VAL VAL THR HIS LYS ASP TYR VAL GLU ARG THR SEQRES 6 A 336 LYS LYS GLU LEU PRO GLU LEU PRO ASP GLU ASN ILE ILE SEQRES 7 A 336 ALA GLU PRO MET LYS LYS ASN THR ALA PRO ALA CYS PHE SEQRES 8 A 336 ILE GLY THR LYS LEU ALA ASP ASP ASP GLU PRO VAL LEU SEQRES 9 A 336 VAL LEU PRO ALA ASP HIS ARG ILE PRO ASP THR LYS LYS SEQRES 10 A 336 PHE TRP LYS THR VAL LYS LYS ALA LEU ASP ALA LEU GLU SEQRES 11 A 336 LYS TYR ASP GLY LEU PHE THR PHE GLY ILE VAL PRO THR SEQRES 12 A 336 ARG PRO GLU THR GLY TYR GLY TYR ILE GLU ILE GLY GLU SEQRES 13 A 336 GLU LEU GLU GLU GLY VAL HIS LYS VAL ALA GLN PHE ARG SEQRES 14 A 336 GLU LYS PRO ASP LEU GLU THR ALA LYS LYS PHE VAL GLU SEQRES 15 A 336 SER GLY ARG PHE LEU TRP ASN SER GLY MET PHE LEU TRP SEQRES 16 A 336 LYS ALA ARG GLU PHE ILE GLU GLU VAL LYS VAL CYS GLU SEQRES 17 A 336 PRO SER ILE TYR GLU ASN LEU LYS ASP VAL ASP PRO ARG SEQRES 18 A 336 ASN PHE GLU GLU LEU LYS LYS ALA TYR GLU LYS VAL PRO SEQRES 19 A 336 SER ILE SER VAL ASP TYR ALA VAL MET GLU LYS SER LYS SEQRES 20 A 336 LYS VAL ARG VAL VAL LYS ALA ASP PHE GLU TRP SER ASP SEQRES 21 A 336 LEU GLY ASN TRP SER SER VAL ARG GLU ILE GLU GLY TYR SEQRES 22 A 336 THR GLU GLU SER ASP GLU VAL ILE LEU VAL ASP SER ASP SEQRES 23 A 336 ARG VAL PHE VAL LYS THR HIS ASN LYS PRO ILE ALA VAL SEQRES 24 A 336 VAL GLY LEU SER ASP VAL ILE VAL ILE ASP THR PRO ASN SEQRES 25 A 336 GLY ILE LEU ILE CYS LYS GLU GLU TYR ALA GLN LYS VAL SEQRES 26 A 336 ARG GLU VAL VAL LYS LYS LEU PHE ARG THR SER SEQRES 1 B 336 VAL MET LYS ALA LEU ILE LEU ALA GLY GLY SER GLY GLU SEQRES 2 B 336 ARG PHE TRP PRO LEU SER THR PRO GLU THR PRO LYS GLN SEQRES 3 B 336 PHE LEU LYS LEU PHE GLY ASN LYS SER LEU MET ARG TRP SEQRES 4 B 336 THR PHE GLU ARG VAL LEU GLU GLU MET ASP PRO LYS ASP SEQRES 5 B 336 VAL ILE VAL VAL THR HIS LYS ASP TYR VAL GLU ARG THR SEQRES 6 B 336 LYS LYS GLU LEU PRO GLU LEU PRO ASP GLU ASN ILE ILE SEQRES 7 B 336 ALA GLU PRO MET LYS LYS ASN THR ALA PRO ALA CYS PHE SEQRES 8 B 336 ILE GLY THR LYS LEU ALA ASP ASP ASP GLU PRO VAL LEU SEQRES 9 B 336 VAL LEU PRO ALA ASP HIS ARG ILE PRO ASP THR LYS LYS SEQRES 10 B 336 PHE TRP LYS THR VAL LYS LYS ALA LEU ASP ALA LEU GLU SEQRES 11 B 336 LYS TYR ASP GLY LEU PHE THR PHE GLY ILE VAL PRO THR SEQRES 12 B 336 ARG PRO GLU THR GLY TYR GLY TYR ILE GLU ILE GLY GLU SEQRES 13 B 336 GLU LEU GLU GLU GLY VAL HIS LYS VAL ALA GLN PHE ARG SEQRES 14 B 336 GLU LYS PRO ASP LEU GLU THR ALA LYS LYS PHE VAL GLU SEQRES 15 B 336 SER GLY ARG PHE LEU TRP ASN SER GLY MET PHE LEU TRP SEQRES 16 B 336 LYS ALA ARG GLU PHE ILE GLU GLU VAL LYS VAL CYS GLU SEQRES 17 B 336 PRO SER ILE TYR GLU ASN LEU LYS ASP VAL ASP PRO ARG SEQRES 18 B 336 ASN PHE GLU GLU LEU LYS LYS ALA TYR GLU LYS VAL PRO SEQRES 19 B 336 SER ILE SER VAL ASP TYR ALA VAL MET GLU LYS SER LYS SEQRES 20 B 336 LYS VAL ARG VAL VAL LYS ALA ASP PHE GLU TRP SER ASP SEQRES 21 B 336 LEU GLY ASN TRP SER SER VAL ARG GLU ILE GLU GLY TYR SEQRES 22 B 336 THR GLU GLU SER ASP GLU VAL ILE LEU VAL ASP SER ASP SEQRES 23 B 336 ARG VAL PHE VAL LYS THR HIS ASN LYS PRO ILE ALA VAL SEQRES 24 B 336 VAL GLY LEU SER ASP VAL ILE VAL ILE ASP THR PRO ASN SEQRES 25 B 336 GLY ILE LEU ILE CYS LYS GLU GLU TYR ALA GLN LYS VAL SEQRES 26 B 336 ARG GLU VAL VAL LYS LYS LEU PHE ARG THR SER FORMUL 3 HOH *47(H2 O) HELIX 1 1 GLY A 12 TRP A 16 5 5 HELIX 2 2 LYS A 25 LEU A 28 5 4 HELIX 3 3 SER A 35 GLU A 46 1 12 HELIX 4 4 ASP A 49 LYS A 51 5 3 HELIX 5 5 TYR A 61 LEU A 69 1 9 HELIX 6 6 PRO A 73 GLU A 75 5 3 HELIX 7 7 ASN A 85 LYS A 95 1 11 HELIX 8 8 ASP A 114 ASP A 133 1 20 HELIX 9 9 ALA A 177 GLU A 182 1 6 HELIX 10 10 ALA A 197 GLU A 208 1 12 HELIX 11 11 GLU A 208 LYS A 216 1 9 HELIX 12 12 ASN A 222 VAL A 233 1 12 HELIX 13 13 SER A 237 VAL A 242 1 6 HELIX 14 14 ASN A 263 GLY A 272 1 10 HELIX 15 15 GLU A 320 GLN A 323 5 4 HELIX 16 16 LYS A 324 PHE A 333 1 10 HELIX 17 17 SER B 11 TRP B 16 5 6 HELIX 18 18 PRO B 24 LEU B 28 5 5 HELIX 19 19 SER B 35 LEU B 45 1 11 HELIX 20 20 ASP B 49 LYS B 51 5 3 HELIX 21 21 LYS B 59 LEU B 69 1 11 HELIX 22 22 PRO B 73 GLU B 75 5 3 HELIX 23 23 ASN B 85 LYS B 95 1 11 HELIX 24 24 ASP B 114 ASP B 133 1 20 HELIX 25 25 ASP B 173 GLY B 184 1 12 HELIX 26 26 ALA B 197 GLU B 208 1 12 HELIX 27 27 GLU B 208 LYS B 216 1 9 HELIX 28 28 ASN B 222 VAL B 233 1 12 HELIX 29 29 SER B 237 VAL B 242 1 6 HELIX 30 30 ASN B 263 GLY B 272 1 10 HELIX 31 31 GLU B 320 GLN B 323 5 4 HELIX 32 32 LYS B 324 PHE B 333 1 10 SHEET 1 AA 8 LYS A 3 ALA A 8 0 SHEET 2 AA 8 PRO A 102 PRO A 107 1 O PRO A 102 N LYS A 3 SHEET 3 AA 8 PHE A 186 LYS A 196 -1 O PHE A 193 N VAL A 105 SHEET 4 AA 8 GLY A 150 GLU A 159 -1 O GLY A 150 N ASN A 189 SHEET 5 AA 8 VAL A 162 ARG A 169 -1 O VAL A 162 N GLU A 159 SHEET 6 AA 8 VAL A 249 LYS A 253 -1 O VAL A 249 N VAL A 165 SHEET 7 AA 8 LEU A 135 ILE A 140 1 O LEU A 135 N ARG A 250 SHEET 8 AA 8 LYS A 3 ALA A 8 1 O LYS A 3 N LEU A 104 SHEET 1 AB 5 VAL A 280 VAL A 283 0 SHEET 2 AB 5 ILE A 297 VAL A 300 1 O ILE A 297 N ILE A 281 SHEET 3 AB 5 GLY B 313 LYS B 318 1 O ILE B 314 N ALA A 298 SHEET 4 AB 5 VAL B 305 THR B 310 -1 O ILE B 306 N CYS B 317 SHEET 5 AB 5 VAL B 288 LYS B 291 1 O PHE B 289 N VAL B 307 SHEET 1 AC 5 PHE A 289 LYS A 291 0 SHEET 2 AC 5 VAL A 305 THR A 310 1 O VAL A 305 N PHE A 289 SHEET 3 AC 5 GLY A 313 LYS A 318 -1 O GLY A 313 N THR A 310 SHEET 4 AC 5 ILE B 297 VAL B 300 1 O ALA B 298 N ILE A 316 SHEET 5 AC 5 VAL B 280 VAL B 283 1 O ILE B 281 N VAL B 299 SHEET 1 BA 8 LYS B 3 LEU B 7 0 SHEET 2 BA 8 PRO B 102 PRO B 107 1 O PRO B 102 N LYS B 3 SHEET 3 BA 8 PHE B 186 LYS B 196 -1 O PHE B 193 N VAL B 105 SHEET 4 BA 8 TYR B 151 GLU B 159 -1 O ILE B 152 N LEU B 187 SHEET 5 BA 8 VAL B 162 ARG B 169 -1 O VAL B 162 N LEU B 158 SHEET 6 BA 8 VAL B 249 ALA B 254 -1 O VAL B 249 N VAL B 165 SHEET 7 BA 8 LEU B 135 ILE B 140 1 O LEU B 135 N ARG B 250 SHEET 8 BA 8 LYS B 3 LEU B 7 1 O LYS B 3 N LEU B 104 CISPEP 1 TRP A 16 PRO A 17 0 7.73 CISPEP 2 TRP B 16 PRO B 17 0 4.75 CRYST1 64.011 92.999 69.687 90.00 110.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015622 0.000000 0.005763 0.00000 SCALE2 0.000000 0.010753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015295 0.00000