HEADER GTP-BINDING PROTEIN 24-FEB-10 2X77 TITLE CRYSTAL STRUCTURE OF LEISHMANIA MAJOR ADP RIBOSYLATION FACTOR-LIKE 1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADP RIBOSYLATION FACTOR-LIKE 1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DISULPHIDE LINK BETWEEN C83A AND C83B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 STRAIN: FRIEDLIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15BTEV KEYWDS GTP-BINDING PROTEIN, SMALL GTPASE, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.R.FLEMING,A.DAWSON,W.N.HUNTER REVDAT 7 06-NOV-24 2X77 1 REMARK REVDAT 6 20-DEC-23 2X77 1 REMARK LINK REVDAT 5 08-MAY-19 2X77 1 REMARK REVDAT 4 15-JUN-11 2X77 1 SOURCE JRNL REMARK DBREF REVDAT 4 2 1 SEQADV REVDAT 3 13-OCT-10 2X77 1 JRNL REVDAT 2 08-SEP-10 2X77 1 JRNL REVDAT 1 02-MAR-10 2X77 0 JRNL AUTH J.R.FLEMING,A.DAWSON,W.N.HUNTER JRNL TITL CRYSTAL STRUCTURE OF LEISHMANIA MAJOR ADP RIBOSYLATION JRNL TITL 2 FACTOR-LIKE 1 AND A CLASSIFICATION OF RELATED GTPASE FAMILY JRNL TITL 3 MEMBERS IN THIS KINETOPLASTID. JRNL REF MOL.BIOCHEM.PARASITOL. V. 174 141 2010 JRNL REFN ISSN 0166-6851 JRNL PMID 20801163 JRNL DOI 10.1016/J.MOLBIOPARA.2010.08.002 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 17566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 947 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1292 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : 2.86000 REMARK 3 B33 (A**2) : -2.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.321 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.817 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2876 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3916 ; 1.815 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 7.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;38.421 ;24.252 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;17.501 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.436 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2095 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 0.934 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2785 ; 1.663 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1148 ; 2.290 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1126 ; 3.510 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 49 TO 54 AND 74 TO 82 IN CHAIN B ARE REMARK 3 DISORDERED. REMARK 4 REMARK 4 2X77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290043019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98137 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18516 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 78.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1MOZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROPS OF 0.75 UL PROTEIN REMARK 280 SOLUTION, 0.75 UL 75 MM CALCIUM ACETATE, 17 % PEG 3350., VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.47200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 185 REMARK 465 GLY A 186 REMARK 465 ALA A 187 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 VAL B 49 REMARK 465 PRO B 50 REMARK 465 THR B 51 REMARK 465 VAL B 52 REMARK 465 GLY B 53 REMARK 465 VAL B 54 REMARK 465 GLN B 74 REMARK 465 THR B 75 REMARK 465 GLY B 76 REMARK 465 VAL B 77 REMARK 465 ARG B 78 REMARK 465 PRO B 79 REMARK 465 TYR B 80 REMARK 465 TRP B 81 REMARK 465 ARG B 82 REMARK 465 GLY B 184 REMARK 465 LEU B 185 REMARK 465 GLY B 186 REMARK 465 ALA B 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2015 O HOH A 2017 2.16 REMARK 500 OD2 ASP B 115 O HOH B 2021 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 5 -73.45 -48.91 REMARK 500 ASP A 29 151.04 -49.15 REMARK 500 HIS A 41 61.36 33.50 REMARK 500 LYS A 62 -124.44 59.64 REMARK 500 ARG A 78 131.61 -37.31 REMARK 500 CYS A 83 -76.36 78.13 REMARK 500 TYR A 84 -20.84 13.24 REMARK 500 ARG A 120 -80.35 -39.36 REMARK 500 LYS A 121 51.50 -104.36 REMARK 500 ALA B 17 -19.41 -46.64 REMARK 500 ARG B 19 86.79 171.40 REMARK 500 ARG B 19 88.20 170.90 REMARK 500 LYS B 62 -120.22 47.07 REMARK 500 SER B 162 119.48 -166.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 189 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 34 OG1 REMARK 620 2 GDP A 188 O1B 89.4 REMARK 620 3 HOH A2013 O 96.4 155.1 REMARK 620 4 HOH A2017 O 117.8 106.1 92.6 REMARK 620 5 HOH A2049 O 78.5 79.3 78.2 162.4 REMARK 620 6 HOH A2050 O 160.3 83.5 83.0 81.9 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 189 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 34 OG1 REMARK 620 2 GLU B 57 OE2 66.8 REMARK 620 3 GDP B 188 O1B 84.4 134.0 REMARK 620 4 HOH B2010 O 110.1 73.6 152.3 REMARK 620 5 HOH B2015 O 125.3 82.3 86.7 102.2 REMARK 620 6 HOH B2029 O 157.7 135.0 75.7 84.7 64.1 REMARK 620 7 HOH B2030 O 90.4 128.1 84.9 71.9 142.3 78.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 189 DBREF 2X77 A 1 187 UNP Q4QEJ1 Q4QEJ1_LEIMA 1 187 DBREF 2X77 B 1 187 UNP Q4QEJ1 Q4QEJ1_LEIMA 1 187 SEQADV 2X77 GLY A -1 UNP Q4QEJ1 EXPRESSION TAG SEQADV 2X77 HIS A 0 UNP Q4QEJ1 EXPRESSION TAG SEQADV 2X77 GLY B -1 UNP Q4QEJ1 EXPRESSION TAG SEQADV 2X77 HIS B 0 UNP Q4QEJ1 EXPRESSION TAG SEQRES 1 A 189 GLY HIS MET GLY ALA TRP LEU ALA SER LEU LYS GLN THR SEQRES 2 A 189 LEU GLY LEU LEU PRO ALA ASP ARG LYS ILE ARG VAL LEU SEQRES 3 A 189 MET LEU GLY LEU ASP ASN ALA GLY LYS THR SER ILE LEU SEQRES 4 A 189 TYR ARG LEU HIS LEU GLY ASP VAL VAL THR THR VAL PRO SEQRES 5 A 189 THR VAL GLY VAL ASN LEU GLU THR LEU GLN TYR LYS ASN SEQRES 6 A 189 ILE SER PHE GLU VAL TRP ASP LEU GLY GLY GLN THR GLY SEQRES 7 A 189 VAL ARG PRO TYR TRP ARG CYS TYR PHE SER ASP THR ASP SEQRES 8 A 189 ALA VAL ILE TYR VAL VAL ASP SER THR ASP ARG ASP ARG SEQRES 9 A 189 MET GLY VAL ALA LYS HIS GLU LEU TYR ALA LEU LEU ASP SEQRES 10 A 189 GLU ASP GLU LEU ARG LYS SER LEU LEU LEU ILE PHE ALA SEQRES 11 A 189 ASN LYS GLN ASP LEU PRO ASP ALA ALA SER GLU ALA GLU SEQRES 12 A 189 ILE ALA GLU GLN LEU GLY VAL SER SER ILE MET ASN ARG SEQRES 13 A 189 THR TRP THR ILE VAL LYS SER SER SER LYS THR GLY ASP SEQRES 14 A 189 GLY LEU VAL GLU GLY MET ASP TRP LEU VAL GLU ARG LEU SEQRES 15 A 189 ARG GLU GLN GLY LEU GLY ALA SEQRES 1 B 189 GLY HIS MET GLY ALA TRP LEU ALA SER LEU LYS GLN THR SEQRES 2 B 189 LEU GLY LEU LEU PRO ALA ASP ARG LYS ILE ARG VAL LEU SEQRES 3 B 189 MET LEU GLY LEU ASP ASN ALA GLY LYS THR SER ILE LEU SEQRES 4 B 189 TYR ARG LEU HIS LEU GLY ASP VAL VAL THR THR VAL PRO SEQRES 5 B 189 THR VAL GLY VAL ASN LEU GLU THR LEU GLN TYR LYS ASN SEQRES 6 B 189 ILE SER PHE GLU VAL TRP ASP LEU GLY GLY GLN THR GLY SEQRES 7 B 189 VAL ARG PRO TYR TRP ARG CYS TYR PHE SER ASP THR ASP SEQRES 8 B 189 ALA VAL ILE TYR VAL VAL ASP SER THR ASP ARG ASP ARG SEQRES 9 B 189 MET GLY VAL ALA LYS HIS GLU LEU TYR ALA LEU LEU ASP SEQRES 10 B 189 GLU ASP GLU LEU ARG LYS SER LEU LEU LEU ILE PHE ALA SEQRES 11 B 189 ASN LYS GLN ASP LEU PRO ASP ALA ALA SER GLU ALA GLU SEQRES 12 B 189 ILE ALA GLU GLN LEU GLY VAL SER SER ILE MET ASN ARG SEQRES 13 B 189 THR TRP THR ILE VAL LYS SER SER SER LYS THR GLY ASP SEQRES 14 B 189 GLY LEU VAL GLU GLY MET ASP TRP LEU VAL GLU ARG LEU SEQRES 15 B 189 ARG GLU GLN GLY LEU GLY ALA HET GDP A 188 28 HET MG A 189 1 HET GDP B 188 28 HET MG B 189 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *81(H2 O) HELIX 1 1 SER A 7 LEU A 14 1 8 HELIX 2 2 GLY A 32 LEU A 40 1 9 HELIX 3 3 ARG A 102 ASP A 115 1 14 HELIX 4 4 SER A 138 LEU A 146 1 9 HELIX 5 5 GLY A 147 ILE A 151 5 5 HELIX 6 6 GLY A 168 GLN A 183 1 16 HELIX 7 7 SER B 7 LEU B 14 1 8 HELIX 8 8 GLY B 32 LEU B 40 1 9 HELIX 9 9 ASP B 99 ASP B 101 5 3 HELIX 10 10 ARG B 102 ASP B 115 1 14 HELIX 11 11 GLU B 116 ARG B 120 5 5 HELIX 12 12 SER B 138 LEU B 146 1 9 HELIX 13 13 GLY B 168 GLN B 183 1 16 SHEET 1 AA 7 VAL A 46 THR A 48 0 SHEET 2 AA 7 LEU A 56 TYR A 61 -1 O LEU A 56 N THR A 48 SHEET 3 AA 7 ILE A 64 LEU A 71 -1 O ILE A 64 N TYR A 61 SHEET 4 AA 7 ILE A 21 LEU A 28 1 O ILE A 21 N SER A 65 SHEET 5 AA 7 ALA A 90 ASP A 96 1 O ALA A 90 N LEU A 24 SHEET 6 AA 7 LEU A 123 ASN A 129 1 O LEU A 123 N VAL A 91 SHEET 7 AA 7 TRP A 156 LYS A 160 1 O THR A 157 N ILE A 126 SHEET 1 BA 5 VAL B 46 THR B 47 0 SHEET 2 BA 5 GLU B 57 TYR B 61 -1 O THR B 58 N VAL B 46 SHEET 3 BA 5 ILE B 64 VAL B 68 -1 O ILE B 64 N TYR B 61 SHEET 4 BA 5 ILE B 21 LEU B 28 1 O ILE B 21 N SER B 65 SHEET 5 BA 5 ASP B 70 LEU B 71 1 N LEU B 71 O GLY B 27 SHEET 1 BB 7 VAL B 46 THR B 47 0 SHEET 2 BB 7 GLU B 57 TYR B 61 -1 O THR B 58 N VAL B 46 SHEET 3 BB 7 ILE B 64 VAL B 68 -1 O ILE B 64 N TYR B 61 SHEET 4 BB 7 ILE B 21 LEU B 28 1 O ILE B 21 N SER B 65 SHEET 5 BB 7 ALA B 90 ASP B 96 1 O ALA B 90 N LEU B 24 SHEET 6 BB 7 LEU B 123 ASN B 129 1 O LEU B 123 N VAL B 91 SHEET 7 BB 7 TRP B 156 LYS B 160 1 O THR B 157 N ILE B 126 SHEET 1 BC 2 ASP B 70 LEU B 71 0 SHEET 2 BC 2 ILE B 21 LEU B 28 1 O GLY B 27 N LEU B 71 SSBOND 1 CYS A 83 CYS B 83 1555 1555 2.06 LINK OG1 THR A 34 MG MG A 189 1555 1555 2.01 LINK O1B GDP A 188 MG MG A 189 1555 1555 2.09 LINK MG MG A 189 O HOH A2013 1555 1555 1.88 LINK MG MG A 189 O HOH A2017 1555 1555 2.26 LINK MG MG A 189 O HOH A2049 1555 1555 2.33 LINK MG MG A 189 O HOH A2050 1555 1555 2.18 LINK OG1 THR B 34 MG MG B 189 1555 1555 2.06 LINK OE2 GLU B 57 MG MG B 189 1555 1555 2.61 LINK O1B GDP B 188 MG MG B 189 1555 1555 2.16 LINK MG MG B 189 O HOH B2010 1555 1555 2.07 LINK MG MG B 189 O HOH B2015 1555 1555 2.33 LINK MG MG B 189 O HOH B2029 1555 1555 2.26 LINK MG MG B 189 O HOH B2030 1555 1555 2.22 SITE 1 AC1 18 ASP A 29 ASN A 30 ALA A 31 GLY A 32 SITE 2 AC1 18 LYS A 33 THR A 34 SER A 35 LYS A 130 SITE 3 AC1 18 ASP A 132 LEU A 133 MET A 152 SER A 162 SITE 4 AC1 18 SER A 163 LYS A 164 MG A 189 HOH A2045 SITE 5 AC1 18 HOH A2049 HOH A2050 SITE 1 AC2 7 THR A 34 GLU A 57 GDP A 188 HOH A2013 SITE 2 AC2 7 HOH A2017 HOH A2049 HOH A2050 SITE 1 AC3 20 ASP B 29 ASN B 30 ALA B 31 GLY B 32 SITE 2 AC3 20 LYS B 33 THR B 34 SER B 35 LYS B 130 SITE 3 AC3 20 ASP B 132 LEU B 133 SER B 150 MET B 152 SITE 4 AC3 20 SER B 162 SER B 163 LYS B 164 MG B 189 SITE 5 AC3 20 HOH B2015 HOH B2029 HOH B2030 HOH B2031 SITE 1 AC4 7 THR B 34 GLU B 57 GDP B 188 HOH B2010 SITE 2 AC4 7 HOH B2015 HOH B2029 HOH B2030 CRYST1 35.286 78.944 58.034 90.00 93.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028340 0.000000 0.001535 0.00000 SCALE2 0.000000 0.012667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017257 0.00000