HEADER VIRAL PROTEIN 05-MAR-10 2X82 TITLE EVOLUTIONARY BASIS OF HIV RESTRICTION BY THE ANTIRETROVIRAL TRIMCYP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 136-280; COMPND 5 SYNONYM: CA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SOURCE 3 D194); SOURCE 4 ORGANISM_TAXID: 11713; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRIM, VIRAL PROTEIN, RESTRICTION FACTOR IMMUNITY EXPDTA X-RAY DIFFRACTION AUTHOR A.J.PRICE,L.C.JAMES REVDAT 3 08-MAY-24 2X82 1 REMARK REVDAT 2 29-SEP-10 2X82 1 REMARK REVDAT 1 15-SEP-10 2X82 0 JRNL AUTH L.M.YLINEN,A.J.PRICE,J.RASAIYAAH,S.HUE,N.J.ROSE,F.MARZETTA, JRNL AUTH 2 L.C.JAMES,G.J.TOWERS JRNL TITL CONFORMATIONAL ADAPTATION OF ASIAN MACAQUE TRIMCYP DIRECTS JRNL TITL 2 LINEAGE SPECIFIC ANTIVIRAL ACTIVITY. JRNL REF PLOS PATHOG. V. 6 1062 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 20808866 JRNL DOI 10.1371/JOURNAL.PPAT.1001062 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 20611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1110 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1563 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4576 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : 3.15000 REMARK 3 B33 (A**2) : -3.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.586 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.371 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.320 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.425 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5092 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6988 ; 1.536 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 6.589 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;35.426 ;24.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 848 ;19.949 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;20.538 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 728 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4100 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3104 ; 0.546 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5100 ; 1.063 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1988 ; 1.727 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1876 ; 2.901 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0843 21.6527 4.4224 REMARK 3 T TENSOR REMARK 3 T11: 0.0112 T22: 0.0964 REMARK 3 T33: 0.1358 T12: -0.0015 REMARK 3 T13: 0.0100 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.4481 L22: 1.7192 REMARK 3 L33: 1.3771 L12: -0.4668 REMARK 3 L13: 0.2228 L23: -0.5432 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.0118 S13: 0.0402 REMARK 3 S21: -0.0284 S22: -0.0270 S23: 0.0549 REMARK 3 S31: 0.0515 S32: -0.0594 S33: -0.0177 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5648 12.6838 36.8939 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.0064 REMARK 3 T33: 0.1213 T12: -0.0164 REMARK 3 T13: 0.0073 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.4817 L22: 1.5357 REMARK 3 L33: 2.5337 L12: -0.0913 REMARK 3 L13: 0.0374 L23: -0.6698 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: -0.0567 S13: 0.0658 REMARK 3 S21: 0.2170 S22: 0.0022 S23: -0.0916 REMARK 3 S31: -0.2078 S32: 0.0350 S33: 0.0173 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 146 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2691 -12.5446 33.5219 REMARK 3 T TENSOR REMARK 3 T11: 0.0683 T22: 0.2640 REMARK 3 T33: 0.0601 T12: -0.1169 REMARK 3 T13: -0.0204 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.5653 L22: 1.5721 REMARK 3 L33: 3.4987 L12: -0.4134 REMARK 3 L13: -0.0389 L23: -0.6179 REMARK 3 S TENSOR REMARK 3 S11: 0.1036 S12: -0.0745 S13: -0.0083 REMARK 3 S21: -0.0583 S22: -0.1099 S23: 0.1482 REMARK 3 S31: 0.2026 S32: -0.5714 S33: 0.0063 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 146 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0971 -13.0961 0.0134 REMARK 3 T TENSOR REMARK 3 T11: 0.2197 T22: 0.0803 REMARK 3 T33: 0.0897 T12: 0.1234 REMARK 3 T13: -0.0154 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.8131 L22: 1.3350 REMARK 3 L33: 3.6183 L12: 0.5790 REMARK 3 L13: -0.3924 L23: 0.7966 REMARK 3 S TENSOR REMARK 3 S11: 0.0049 S12: -0.0347 S13: -0.0881 REMARK 3 S21: -0.0025 S22: 0.0297 S23: -0.0975 REMARK 3 S31: 0.5258 S32: 0.3134 S33: -0.0346 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2X82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1290043123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22894 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.73500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.68000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.38500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.68000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.73500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.38500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2005 O HOH A 2006 2.12 REMARK 500 O HIS D 84 NH1 ARG D 100 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 28 CD GLU A 28 OE1 0.099 REMARK 500 ARG B 18 NE ARG B 18 CZ 0.140 REMARK 500 ARG B 18 CZ ARG B 18 NH1 0.173 REMARK 500 ARG C 18 CZ ARG C 18 NH2 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 18 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU C 91 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG C 120 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 31 85.11 68.61 REMARK 500 HIS A 84 57.29 -145.39 REMARK 500 PRO A 85 -44.19 -22.78 REMARK 500 ILE A 86 115.43 81.97 REMARK 500 ARG A 97 150.31 -46.90 REMARK 500 LYS B 31 86.39 40.25 REMARK 500 HIS B 62 70.56 -104.28 REMARK 500 HIS B 62 70.98 -104.28 REMARK 500 ILE B 86 118.93 61.52 REMARK 500 PRO B 90 83.56 -14.47 REMARK 500 PRO B 92 -120.48 -97.46 REMARK 500 ALA B 93 -111.18 -159.48 REMARK 500 ASN B 123 79.14 41.89 REMARK 500 LYS C 31 79.92 68.17 REMARK 500 HIS C 62 66.11 -108.82 REMARK 500 HIS C 62 62.94 -108.82 REMARK 500 LEU C 91 140.31 56.77 REMARK 500 PRO C 92 88.84 -51.82 REMARK 500 ALA C 93 99.18 -68.11 REMARK 500 GLN C 95 -153.92 -88.00 REMARK 500 ASN C 123 79.17 41.04 REMARK 500 LYS D 31 84.92 65.88 REMARK 500 HIS D 62 78.87 -105.57 REMARK 500 HIS D 62 78.89 -105.57 REMARK 500 PRO D 87 83.99 27.29 REMARK 500 ALA D 88 -71.93 -50.18 REMARK 500 ARG D 120 140.90 -38.81 REMARK 500 ASN D 123 67.57 31.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X83 RELATED DB: PDB REMARK 900 EVOLUTIONARY BASIS OF HIV RESTRICTION BY THE ANTIRETROVIRAL TRIMCYP DBREF 2X82 A 2 146 PDB 2X82 2X82 2 146 DBREF 2X82 B 2 146 PDB 2X82 2X82 2 146 DBREF 2X82 C 2 146 PDB 2X82 2X82 2 146 DBREF 2X82 D 2 146 PDB 2X82 2X82 2 146 SEQRES 1 A 145 PRO VAL GLN HIS VAL GLY GLY THR TYR THR HIS ILE PRO SEQRES 2 A 145 LEU SER PRO ARG THR LEU ASN ALA TRP VAL LYS LEU VAL SEQRES 3 A 145 GLU GLU LYS LYS PHE GLY ALA GLU VAL VAL PRO GLY PHE SEQRES 4 A 145 GLN ALA LEU SER GLU GLY CYS THR PRO TYR ASP ILE ASN SEQRES 5 A 145 GLN MET LEU ASN CYS VAL GLY ASP HIS GLN ALA ALA MET SEQRES 6 A 145 GLN ILE ILE ARG GLU ILE ILE ASN GLU GLU ALA ALA GLU SEQRES 7 A 145 TRP ASP VAL GLN HIS PRO ILE PRO ALA GLY PRO LEU PRO SEQRES 8 A 145 ALA GLY GLN LEU ARG GLU PRO ARG GLY SER ASP ILE ALA SEQRES 9 A 145 GLY THR THR SER THR VAL GLU GLU GLN ILE GLN TRP MET SEQRES 10 A 145 PHE ARG PRO GLN ASN PRO VAL PRO VAL GLY ASN ILE TYR SEQRES 11 A 145 ARG ARG TRP ILE GLN ILE GLY LEU GLN LYS CYS VAL ARG SEQRES 12 A 145 MET TYR SEQRES 1 B 145 PRO VAL GLN HIS VAL GLY GLY THR TYR THR HIS ILE PRO SEQRES 2 B 145 LEU SER PRO ARG THR LEU ASN ALA TRP VAL LYS LEU VAL SEQRES 3 B 145 GLU GLU LYS LYS PHE GLY ALA GLU VAL VAL PRO GLY PHE SEQRES 4 B 145 GLN ALA LEU SER GLU GLY CYS THR PRO TYR ASP ILE ASN SEQRES 5 B 145 GLN MET LEU ASN CYS VAL GLY ASP HIS GLN ALA ALA MET SEQRES 6 B 145 GLN ILE ILE ARG GLU ILE ILE ASN GLU GLU ALA ALA GLU SEQRES 7 B 145 TRP ASP VAL GLN HIS PRO ILE PRO ALA GLY PRO LEU PRO SEQRES 8 B 145 ALA GLY GLN LEU ARG GLU PRO ARG GLY SER ASP ILE ALA SEQRES 9 B 145 GLY THR THR SER THR VAL GLU GLU GLN ILE GLN TRP MET SEQRES 10 B 145 PHE ARG PRO GLN ASN PRO VAL PRO VAL GLY ASN ILE TYR SEQRES 11 B 145 ARG ARG TRP ILE GLN ILE GLY LEU GLN LYS CYS VAL ARG SEQRES 12 B 145 MET TYR SEQRES 1 C 145 PRO VAL GLN HIS VAL GLY GLY THR TYR THR HIS ILE PRO SEQRES 2 C 145 LEU SER PRO ARG THR LEU ASN ALA TRP VAL LYS LEU VAL SEQRES 3 C 145 GLU GLU LYS LYS PHE GLY ALA GLU VAL VAL PRO GLY PHE SEQRES 4 C 145 GLN ALA LEU SER GLU GLY CYS THR PRO TYR ASP ILE ASN SEQRES 5 C 145 GLN MET LEU ASN CYS VAL GLY ASP HIS GLN ALA ALA MET SEQRES 6 C 145 GLN ILE ILE ARG GLU ILE ILE ASN GLU GLU ALA ALA GLU SEQRES 7 C 145 TRP ASP VAL GLN HIS PRO ILE PRO ALA GLY PRO LEU PRO SEQRES 8 C 145 ALA GLY GLN LEU ARG GLU PRO ARG GLY SER ASP ILE ALA SEQRES 9 C 145 GLY THR THR SER THR VAL GLU GLU GLN ILE GLN TRP MET SEQRES 10 C 145 PHE ARG PRO GLN ASN PRO VAL PRO VAL GLY ASN ILE TYR SEQRES 11 C 145 ARG ARG TRP ILE GLN ILE GLY LEU GLN LYS CYS VAL ARG SEQRES 12 C 145 MET TYR SEQRES 1 D 145 PRO VAL GLN HIS VAL GLY GLY THR TYR THR HIS ILE PRO SEQRES 2 D 145 LEU SER PRO ARG THR LEU ASN ALA TRP VAL LYS LEU VAL SEQRES 3 D 145 GLU GLU LYS LYS PHE GLY ALA GLU VAL VAL PRO GLY PHE SEQRES 4 D 145 GLN ALA LEU SER GLU GLY CYS THR PRO TYR ASP ILE ASN SEQRES 5 D 145 GLN MET LEU ASN CYS VAL GLY ASP HIS GLN ALA ALA MET SEQRES 6 D 145 GLN ILE ILE ARG GLU ILE ILE ASN GLU GLU ALA ALA GLU SEQRES 7 D 145 TRP ASP VAL GLN HIS PRO ILE PRO ALA GLY PRO LEU PRO SEQRES 8 D 145 ALA GLY GLN LEU ARG GLU PRO ARG GLY SER ASP ILE ALA SEQRES 9 D 145 GLY THR THR SER THR VAL GLU GLU GLN ILE GLN TRP MET SEQRES 10 D 145 PHE ARG PRO GLN ASN PRO VAL PRO VAL GLY ASN ILE TYR SEQRES 11 D 145 ARG ARG TRP ILE GLN ILE GLY LEU GLN LYS CYS VAL ARG SEQRES 12 D 145 MET TYR FORMUL 5 HOH *56(H2 O) HELIX 1 1 SER A 16 GLU A 29 1 14 HELIX 2 2 GLU A 35 SER A 44 1 10 HELIX 3 3 THR A 48 CYS A 58 1 11 HELIX 4 4 HIS A 62 GLN A 83 1 22 HELIX 5 5 ARG A 100 ALA A 105 1 6 HELIX 6 6 THR A 110 ARG A 120 1 11 HELIX 7 7 PRO A 126 TYR A 146 1 21 HELIX 8 8 SER B 16 LYS B 30 1 15 HELIX 9 9 GLU B 35 SER B 44 1 10 HELIX 10 10 THR B 48 VAL B 59 1 12 HELIX 11 11 HIS B 62 HIS B 84 1 23 HELIX 12 12 ARG B 100 ALA B 105 1 6 HELIX 13 13 THR B 110 ARG B 120 1 11 HELIX 14 14 PRO B 126 TYR B 146 1 21 HELIX 15 15 SER C 16 GLU C 29 1 14 HELIX 16 16 GLU C 35 SER C 44 1 10 HELIX 17 17 THR C 48 VAL C 59 1 12 HELIX 18 18 HIS C 62 HIS C 84 1 23 HELIX 19 19 ARG C 100 ALA C 105 1 6 HELIX 20 20 THR C 110 PHE C 119 1 10 HELIX 21 21 PRO C 126 TYR C 146 1 21 HELIX 22 22 SER D 16 LYS D 31 1 16 HELIX 23 23 GLU D 35 SER D 44 1 10 HELIX 24 24 THR D 48 VAL D 59 1 12 HELIX 25 25 HIS D 62 HIS D 84 1 23 HELIX 26 26 ARG D 100 ALA D 105 1 6 HELIX 27 27 THR D 110 ARG D 120 1 11 HELIX 28 28 PRO D 126 TYR D 146 1 21 SHEET 1 AA 2 VAL A 3 HIS A 5 0 SHEET 2 AA 2 TYR A 10 HIS A 12 -1 O THR A 11 N GLN A 4 SHEET 1 BA 2 VAL B 3 HIS B 5 0 SHEET 2 BA 2 TYR B 10 HIS B 12 -1 O THR B 11 N GLN B 4 SHEET 1 CA 2 VAL C 3 HIS C 5 0 SHEET 2 CA 2 TYR C 10 HIS C 12 -1 O THR C 11 N GLN C 4 SHEET 1 DA 2 VAL D 3 VAL D 6 0 SHEET 2 DA 2 THR D 9 HIS D 12 -1 O THR D 9 N VAL D 6 CISPEP 1 GLY A 89 PRO A 90 0 -8.62 CISPEP 2 ALA B 88 GLY B 89 0 -5.02 CISPEP 3 LEU B 91 PRO B 92 0 -9.98 CISPEP 4 ILE D 86 PRO D 87 0 21.28 CISPEP 5 ALA D 88 GLY D 89 0 -1.93 CISPEP 6 GLY D 89 PRO D 90 0 -9.61 CRYST1 47.470 116.770 129.360 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021066 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007730 0.00000