data_2X8A # _entry.id 2X8A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2X8A PDBE EBI-43114 WWPDB D_1290043114 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2X8A _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-03-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Moche, M.' 1 'Schuetz, P.' 2 'Arrowsmith, C.H.' 3 'Berglund, H.' 4 'Bountra, C.' 5 'Collins, R.' 6 'Edwards, A.M.' 7 'Flodin, S.' 8 'Flores, A.' 9 'Graslund, S.' 10 'Hammarstrom, M.' 11 'Johansson, I.' 12 'Kallas, A.' 13 'Karlberg, T.' 14 'Kotenyova, T.' 15 'Kraulis, P.' 16 'Nordlund, P.' 17 'Nyman, T.' 18 'Persson, C.' 19 'Sehic, A.' 20 'Siponen, M.I.' 21 'Svensson, L.' 22 'Thorsell, A.G.' 23 'Tresaugues, L.' 24 'VanDenBerg, S.' 25 'Wahlberg, E.' 26 'Weigelt, J.' 27 'Welin, M.' 28 'Wisniewska, M.' 29 'Schuler, H.' 30 # _citation.id primary _citation.title 'Human Nuclear Valosin Containing Protein Like (Nvl) , C-Terminal Aaa-ATPase Domain' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Moche, M.' 1 primary 'Schuetz, P.' 2 primary 'Arrowsmith, C.H.' 3 primary 'Berglund, H.' 4 primary 'Bountra, C.' 5 primary 'Collins, R.' 6 primary 'Edwards, A.M.' 7 primary 'Flodin, S.' 8 primary 'Flores, A.' 9 primary 'Graslund, S.' 10 primary 'Hammarstrom, M.' 11 primary 'Johansson, I.' 12 primary 'Kallas, A.' 13 primary 'Karlberg, T.' 14 primary 'Kotenyova, T.' 15 primary 'Kraulis, P.' 16 primary 'Nordlund, P.' 17 primary 'Nyman, T.' 18 primary 'Persson, C.' 19 primary 'Sehic, A.' 20 primary 'Siponen, M.I.' 21 primary 'Svensson, L.' 22 primary 'Thorsell, A.G.' 23 primary 'Tresaugues, L.' 24 primary 'Vandenberg, S.' 25 primary 'Wahlberg, E.' 26 primary 'Weigelt, J.' 27 primary 'Welin, M.' 28 primary 'Wisniewska, M.' 29 primary 'Schuler, H.' 30 # _cell.entry_id 2X8A _cell.length_a 77.989 _cell.length_b 77.989 _cell.length_c 86.038 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X8A _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE' 29813.424 1 ? ? 'C-TERMINAL AAA-ATPASE DOMAIN, 574-845' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPEL LNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR QKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQI ; _entity_poly.pdbx_seq_one_letter_code_can ;SMTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPEL LNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR QKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 THR n 1 4 VAL n 1 5 PRO n 1 6 ASN n 1 7 VAL n 1 8 THR n 1 9 TRP n 1 10 ALA n 1 11 ASP n 1 12 ILE n 1 13 GLY n 1 14 ALA n 1 15 LEU n 1 16 GLU n 1 17 ASP n 1 18 ILE n 1 19 ARG n 1 20 GLU n 1 21 GLU n 1 22 LEU n 1 23 THR n 1 24 MET n 1 25 ALA n 1 26 ILE n 1 27 LEU n 1 28 ALA n 1 29 PRO n 1 30 VAL n 1 31 ARG n 1 32 ASN n 1 33 PRO n 1 34 ASP n 1 35 GLN n 1 36 PHE n 1 37 LYS n 1 38 ALA n 1 39 LEU n 1 40 GLY n 1 41 LEU n 1 42 VAL n 1 43 THR n 1 44 PRO n 1 45 ALA n 1 46 GLY n 1 47 VAL n 1 48 LEU n 1 49 LEU n 1 50 ALA n 1 51 GLY n 1 52 PRO n 1 53 PRO n 1 54 GLY n 1 55 CYS n 1 56 GLY n 1 57 LYS n 1 58 THR n 1 59 LEU n 1 60 LEU n 1 61 ALA n 1 62 LYS n 1 63 ALA n 1 64 VAL n 1 65 ALA n 1 66 ASN n 1 67 GLU n 1 68 SER n 1 69 GLY n 1 70 LEU n 1 71 ASN n 1 72 PHE n 1 73 ILE n 1 74 SER n 1 75 VAL n 1 76 LYS n 1 77 GLY n 1 78 PRO n 1 79 GLU n 1 80 LEU n 1 81 LEU n 1 82 ASN n 1 83 MET n 1 84 TYR n 1 85 VAL n 1 86 GLY n 1 87 GLU n 1 88 SER n 1 89 GLU n 1 90 ARG n 1 91 ALA n 1 92 VAL n 1 93 ARG n 1 94 GLN n 1 95 VAL n 1 96 PHE n 1 97 GLN n 1 98 ARG n 1 99 ALA n 1 100 LYS n 1 101 ASN n 1 102 SER n 1 103 ALA n 1 104 PRO n 1 105 CYS n 1 106 VAL n 1 107 ILE n 1 108 PHE n 1 109 PHE n 1 110 ASP n 1 111 GLU n 1 112 VAL n 1 113 ASP n 1 114 ALA n 1 115 LEU n 1 116 CYS n 1 117 PRO n 1 118 ARG n 1 119 ARG n 1 120 SER n 1 121 ASP n 1 122 ARG n 1 123 GLU n 1 124 THR n 1 125 GLY n 1 126 ALA n 1 127 SER n 1 128 VAL n 1 129 ARG n 1 130 VAL n 1 131 VAL n 1 132 ASN n 1 133 GLN n 1 134 LEU n 1 135 LEU n 1 136 THR n 1 137 GLU n 1 138 MET n 1 139 ASP n 1 140 GLY n 1 141 LEU n 1 142 GLU n 1 143 ALA n 1 144 ARG n 1 145 GLN n 1 146 GLN n 1 147 VAL n 1 148 PHE n 1 149 ILE n 1 150 MET n 1 151 ALA n 1 152 ALA n 1 153 THR n 1 154 ASN n 1 155 ARG n 1 156 PRO n 1 157 ASP n 1 158 ILE n 1 159 ILE n 1 160 ASP n 1 161 PRO n 1 162 ALA n 1 163 ILE n 1 164 LEU n 1 165 ARG n 1 166 PRO n 1 167 GLY n 1 168 ARG n 1 169 LEU n 1 170 ASP n 1 171 LYS n 1 172 THR n 1 173 LEU n 1 174 PHE n 1 175 VAL n 1 176 GLY n 1 177 LEU n 1 178 PRO n 1 179 PRO n 1 180 PRO n 1 181 ALA n 1 182 ASP n 1 183 ARG n 1 184 LEU n 1 185 ALA n 1 186 ILE n 1 187 LEU n 1 188 LYS n 1 189 THR n 1 190 ILE n 1 191 THR n 1 192 LYS n 1 193 ASN n 1 194 GLY n 1 195 THR n 1 196 LYS n 1 197 PRO n 1 198 PRO n 1 199 LEU n 1 200 ASP n 1 201 ALA n 1 202 ASP n 1 203 VAL n 1 204 ASN n 1 205 LEU n 1 206 GLU n 1 207 ALA n 1 208 ILE n 1 209 ALA n 1 210 GLY n 1 211 ASP n 1 212 LEU n 1 213 ARG n 1 214 CYS n 1 215 ASP n 1 216 CYS n 1 217 TYR n 1 218 THR n 1 219 GLY n 1 220 ALA n 1 221 ASP n 1 222 LEU n 1 223 SER n 1 224 ALA n 1 225 LEU n 1 226 VAL n 1 227 ARG n 1 228 GLU n 1 229 ALA n 1 230 SER n 1 231 ILE n 1 232 CYS n 1 233 ALA n 1 234 LEU n 1 235 ARG n 1 236 GLN n 1 237 GLU n 1 238 MET n 1 239 ALA n 1 240 ARG n 1 241 GLN n 1 242 LYS n 1 243 SER n 1 244 GLY n 1 245 ASN n 1 246 GLU n 1 247 LYS n 1 248 GLY n 1 249 GLU n 1 250 LEU n 1 251 LYS n 1 252 VAL n 1 253 SER n 1 254 HIS n 1 255 LYS n 1 256 HIS n 1 257 PHE n 1 258 GLU n 1 259 GLU n 1 260 ALA n 1 261 PHE n 1 262 LYS n 1 263 LYS n 1 264 VAL n 1 265 ARG n 1 266 SER n 1 267 SER n 1 268 ILE n 1 269 SER n 1 270 LYS n 1 271 LYS n 1 272 ASP n 1 273 GLN n 1 274 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) GOLD PRARE2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PNIC-BSA4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'MAMMALIAN GENE COLLECTION (MGC)' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2X8A 1 ? ? 2X8A ? 2 UNP NVL_HUMAN 1 ? ? O15381 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2X8A A 1 ? 2 ? 2X8A 572 ? 573 ? 572 573 2 2 2X8A A 3 ? 274 ? O15381 574 ? 845 ? 574 845 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2X8A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 51.45 _exptl_crystal.description 'SEARCH MODEL WAS GENERATED USING THE CASPR SERVER' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-07-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2X8A _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 28.90 _reflns.d_resolution_high 2.60 _reflns.number_obs 8823 _reflns.number_all ? _reflns.percent_possible_obs 96.0 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.50 _reflns.B_iso_Wilson_estimate 84.02 _reflns.pdbx_redundancy 20.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.67 _reflns_shell.percent_possible_all 62.2 _reflns_shell.Rmerge_I_obs 0.84 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.40 _reflns_shell.pdbx_redundancy 9.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2X8A _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8806 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.85 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2141 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2105 _refine.ls_R_factor_R_free 0.2503 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.45 _refine.ls_number_reflns_R_free 832 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9301 _refine.correlation_coeff_Fo_to_Fc_free 0.8970 _refine.B_iso_mean 81.08 _refine.aniso_B[1][1] -10.8396 _refine.aniso_B[2][2] -10.8396 _refine.aniso_B[3][3] 21.6791 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.304 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.209 _refine.pdbx_overall_SU_R_Blow_DPI 0.354 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.216 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2X8A _refine_analyze.Luzzati_coordinate_error_obs 0.420 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1705 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 1727 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 17.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 1768 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.16 ? 2.00 2415 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 806 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 36 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 264 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1768 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 2.48 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 3.09 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 248 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 2146 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.91 _refine_ls_shell.number_reflns_R_work 2037 _refine_ls_shell.R_factor_R_work 0.2529 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2927 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 10.46 _refine_ls_shell.number_reflns_R_free 238 _refine_ls_shell.number_reflns_all 2275 _refine_ls_shell.R_factor_all 0.2573 # _struct.entry_id 2X8A _struct.title 'Human Nuclear Valosin containing protein Like (NVL), C-terminal AAA- ATPase domain' _struct.pdbx_descriptor 'NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2X8A _struct_keywords.pdbx_keywords 'NUCLEAR PROTEIN' _struct_keywords.text 'NUCLEAR PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 13 ? LEU A 27 ? GLY A 584 LEU A 598 1 ? 15 HELX_P HELX_P2 2 LEU A 27 ? ASN A 32 ? LEU A 598 ASN A 603 1 ? 6 HELX_P HELX_P3 3 ASN A 32 ? LEU A 39 ? ASN A 603 LEU A 610 1 ? 8 HELX_P HELX_P4 4 GLY A 56 ? SER A 68 ? GLY A 627 SER A 639 1 ? 13 HELX_P HELX_P5 5 VAL A 85 ? SER A 102 ? VAL A 656 SER A 673 1 ? 18 HELX_P HELX_P6 6 ARG A 129 ? GLY A 140 ? ARG A 700 GLY A 711 1 ? 12 HELX_P HELX_P7 7 ARG A 155 ? ILE A 159 ? ARG A 726 ILE A 730 5 ? 5 HELX_P HELX_P8 8 ASP A 160 ? ARG A 165 ? ASP A 731 ARG A 736 1 ? 6 HELX_P HELX_P9 9 PRO A 179 ? THR A 191 ? PRO A 750 THR A 762 1 ? 13 HELX_P HELX_P10 10 ASN A 204 ? GLY A 210 ? ASN A 775 GLY A 781 1 ? 7 HELX_P HELX_P11 11 LEU A 212 ? CYS A 216 ? LEU A 783 CYS A 787 5 ? 5 HELX_P HELX_P12 12 THR A 218 ? MET A 238 ? THR A 789 MET A 809 1 ? 21 HELX_P HELX_P13 13 SER A 253 ? LYS A 262 ? SER A 824 LYS A 833 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 103 A . ? ALA 674 A PRO 104 A ? PRO 675 A 1 -3.22 2 LYS 196 A . ? LYS 767 A PRO 197 A ? PRO 768 A 1 4.95 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ASN A 71 ? LYS A 76 ? ASN A 642 LYS A 647 AA 2 CYS A 105 ? ASP A 110 ? CYS A 676 ASP A 681 AA 3 VAL A 147 ? THR A 153 ? VAL A 718 THR A 724 AA 4 GLY A 46 ? ALA A 50 ? GLY A 617 ALA A 621 AA 5 LYS A 171 ? PHE A 174 ? LYS A 742 PHE A 745 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 73 ? N ILE A 644 O VAL A 106 ? O VAL A 677 AA 2 3 N ILE A 107 ? N ILE A 678 O PHE A 148 ? O PHE A 719 AA 3 4 N ALA A 151 ? N ALA A 722 O VAL A 47 ? O VAL A 618 AA 4 5 N LEU A 48 ? N LEU A 619 O LYS A 171 ? O LYS A 742 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE PO4 A 1840' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PO4 A 1841' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 PRO A 53 ? PRO A 624 . ? 1_555 ? 2 AC1 6 GLY A 54 ? GLY A 625 . ? 1_555 ? 3 AC1 6 CYS A 55 ? CYS A 626 . ? 1_555 ? 4 AC1 6 GLY A 56 ? GLY A 627 . ? 1_555 ? 5 AC1 6 LYS A 57 ? LYS A 628 . ? 1_555 ? 6 AC1 6 THR A 58 ? THR A 629 . ? 1_555 ? 7 AC2 4 VAL A 42 ? VAL A 613 . ? 1_555 ? 8 AC2 4 THR A 43 ? THR A 614 . ? 1_555 ? 9 AC2 4 GLU A 142 ? GLU A 713 . ? 1_555 ? 10 AC2 4 ALA A 143 ? ALA A 714 . ? 1_555 ? # _database_PDB_matrix.entry_id 2X8A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2X8A _atom_sites.fract_transf_matrix[1][1] 0.012822 _atom_sites.fract_transf_matrix[1][2] 0.007403 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014806 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011623 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 572 ? ? ? A . n A 1 2 MET 2 573 ? ? ? A . n A 1 3 THR 3 574 ? ? ? A . n A 1 4 VAL 4 575 ? ? ? A . n A 1 5 PRO 5 576 ? ? ? A . n A 1 6 ASN 6 577 ? ? ? A . n A 1 7 VAL 7 578 ? ? ? A . n A 1 8 THR 8 579 ? ? ? A . n A 1 9 TRP 9 580 ? ? ? A . n A 1 10 ALA 10 581 ? ? ? A . n A 1 11 ASP 11 582 ? ? ? A . n A 1 12 ILE 12 583 583 ILE ILE A . n A 1 13 GLY 13 584 584 GLY GLY A . n A 1 14 ALA 14 585 585 ALA ALA A . n A 1 15 LEU 15 586 586 LEU LEU A . n A 1 16 GLU 16 587 587 GLU GLU A . n A 1 17 ASP 17 588 588 ASP ASP A . n A 1 18 ILE 18 589 589 ILE ILE A . n A 1 19 ARG 19 590 590 ARG ARG A . n A 1 20 GLU 20 591 591 GLU GLU A . n A 1 21 GLU 21 592 592 GLU GLU A . n A 1 22 LEU 22 593 593 LEU LEU A . n A 1 23 THR 23 594 594 THR THR A . n A 1 24 MET 24 595 595 MET MET A . n A 1 25 ALA 25 596 596 ALA ALA A . n A 1 26 ILE 26 597 597 ILE ILE A . n A 1 27 LEU 27 598 598 LEU LEU A . n A 1 28 ALA 28 599 599 ALA ALA A . n A 1 29 PRO 29 600 600 PRO PRO A . n A 1 30 VAL 30 601 601 VAL VAL A . n A 1 31 ARG 31 602 602 ARG ARG A . n A 1 32 ASN 32 603 603 ASN ASN A . n A 1 33 PRO 33 604 604 PRO PRO A . n A 1 34 ASP 34 605 605 ASP ASP A . n A 1 35 GLN 35 606 606 GLN GLN A . n A 1 36 PHE 36 607 607 PHE PHE A . n A 1 37 LYS 37 608 608 LYS LYS A . n A 1 38 ALA 38 609 609 ALA ALA A . n A 1 39 LEU 39 610 610 LEU LEU A . n A 1 40 GLY 40 611 611 GLY GLY A . n A 1 41 LEU 41 612 612 LEU LEU A . n A 1 42 VAL 42 613 613 VAL VAL A . n A 1 43 THR 43 614 614 THR THR A . n A 1 44 PRO 44 615 615 PRO PRO A . n A 1 45 ALA 45 616 616 ALA ALA A . n A 1 46 GLY 46 617 617 GLY GLY A . n A 1 47 VAL 47 618 618 VAL VAL A . n A 1 48 LEU 48 619 619 LEU LEU A . n A 1 49 LEU 49 620 620 LEU LEU A . n A 1 50 ALA 50 621 621 ALA ALA A . n A 1 51 GLY 51 622 622 GLY GLY A . n A 1 52 PRO 52 623 623 PRO PRO A . n A 1 53 PRO 53 624 624 PRO PRO A . n A 1 54 GLY 54 625 625 GLY GLY A . n A 1 55 CYS 55 626 626 CYS CYS A . n A 1 56 GLY 56 627 627 GLY GLY A . n A 1 57 LYS 57 628 628 LYS LYS A . n A 1 58 THR 58 629 629 THR THR A . n A 1 59 LEU 59 630 630 LEU LEU A . n A 1 60 LEU 60 631 631 LEU LEU A . n A 1 61 ALA 61 632 632 ALA ALA A . n A 1 62 LYS 62 633 633 LYS LYS A . n A 1 63 ALA 63 634 634 ALA ALA A . n A 1 64 VAL 64 635 635 VAL VAL A . n A 1 65 ALA 65 636 636 ALA ALA A . n A 1 66 ASN 66 637 637 ASN ASN A . n A 1 67 GLU 67 638 638 GLU GLU A . n A 1 68 SER 68 639 639 SER SER A . n A 1 69 GLY 69 640 640 GLY GLY A . n A 1 70 LEU 70 641 641 LEU LEU A . n A 1 71 ASN 71 642 642 ASN ASN A . n A 1 72 PHE 72 643 643 PHE PHE A . n A 1 73 ILE 73 644 644 ILE ILE A . n A 1 74 SER 74 645 645 SER SER A . n A 1 75 VAL 75 646 646 VAL VAL A . n A 1 76 LYS 76 647 647 LYS LYS A . n A 1 77 GLY 77 648 648 GLY GLY A . n A 1 78 PRO 78 649 649 PRO PRO A . n A 1 79 GLU 79 650 650 GLU GLU A . n A 1 80 LEU 80 651 651 LEU LEU A . n A 1 81 LEU 81 652 652 LEU LEU A . n A 1 82 ASN 82 653 653 ASN ASN A . n A 1 83 MET 83 654 654 MET MET A . n A 1 84 TYR 84 655 655 TYR TYR A . n A 1 85 VAL 85 656 656 VAL VAL A . n A 1 86 GLY 86 657 657 GLY GLY A . n A 1 87 GLU 87 658 658 GLU GLU A . n A 1 88 SER 88 659 659 SER SER A . n A 1 89 GLU 89 660 660 GLU GLU A . n A 1 90 ARG 90 661 661 ARG ARG A . n A 1 91 ALA 91 662 662 ALA ALA A . n A 1 92 VAL 92 663 663 VAL VAL A . n A 1 93 ARG 93 664 664 ARG ARG A . n A 1 94 GLN 94 665 665 GLN GLN A . n A 1 95 VAL 95 666 666 VAL VAL A . n A 1 96 PHE 96 667 667 PHE PHE A . n A 1 97 GLN 97 668 668 GLN GLN A . n A 1 98 ARG 98 669 669 ARG ARG A . n A 1 99 ALA 99 670 670 ALA ALA A . n A 1 100 LYS 100 671 671 LYS LYS A . n A 1 101 ASN 101 672 672 ASN ASN A . n A 1 102 SER 102 673 673 SER SER A . n A 1 103 ALA 103 674 674 ALA ALA A . n A 1 104 PRO 104 675 675 PRO PRO A . n A 1 105 CYS 105 676 676 CYS CYS A . n A 1 106 VAL 106 677 677 VAL VAL A . n A 1 107 ILE 107 678 678 ILE ILE A . n A 1 108 PHE 108 679 679 PHE PHE A . n A 1 109 PHE 109 680 680 PHE PHE A . n A 1 110 ASP 110 681 681 ASP ASP A . n A 1 111 GLU 111 682 682 GLU GLU A . n A 1 112 VAL 112 683 683 VAL VAL A . n A 1 113 ASP 113 684 684 ASP ASP A . n A 1 114 ALA 114 685 685 ALA ALA A . n A 1 115 LEU 115 686 686 LEU LEU A . n A 1 116 CYS 116 687 687 CYS CYS A . n A 1 117 PRO 117 688 688 PRO PRO A . n A 1 118 ARG 118 689 ? ? ? A . n A 1 119 ARG 119 690 ? ? ? A . n A 1 120 SER 120 691 ? ? ? A . n A 1 121 ASP 121 692 ? ? ? A . n A 1 122 ARG 122 693 ? ? ? A . n A 1 123 GLU 123 694 ? ? ? A . n A 1 124 THR 124 695 ? ? ? A . n A 1 125 GLY 125 696 ? ? ? A . n A 1 126 ALA 126 697 ? ? ? A . n A 1 127 SER 127 698 698 SER SER A . n A 1 128 VAL 128 699 699 VAL VAL A . n A 1 129 ARG 129 700 700 ARG ARG A . n A 1 130 VAL 130 701 701 VAL VAL A . n A 1 131 VAL 131 702 702 VAL VAL A . n A 1 132 ASN 132 703 703 ASN ASN A . n A 1 133 GLN 133 704 704 GLN GLN A . n A 1 134 LEU 134 705 705 LEU LEU A . n A 1 135 LEU 135 706 706 LEU LEU A . n A 1 136 THR 136 707 707 THR THR A . n A 1 137 GLU 137 708 708 GLU GLU A . n A 1 138 MET 138 709 709 MET MET A . n A 1 139 ASP 139 710 710 ASP ASP A . n A 1 140 GLY 140 711 711 GLY GLY A . n A 1 141 LEU 141 712 712 LEU LEU A . n A 1 142 GLU 142 713 713 GLU GLU A . n A 1 143 ALA 143 714 714 ALA ALA A . n A 1 144 ARG 144 715 715 ARG ARG A . n A 1 145 GLN 145 716 716 GLN GLN A . n A 1 146 GLN 146 717 717 GLN GLN A . n A 1 147 VAL 147 718 718 VAL VAL A . n A 1 148 PHE 148 719 719 PHE PHE A . n A 1 149 ILE 149 720 720 ILE ILE A . n A 1 150 MET 150 721 721 MET MET A . n A 1 151 ALA 151 722 722 ALA ALA A . n A 1 152 ALA 152 723 723 ALA ALA A . n A 1 153 THR 153 724 724 THR THR A . n A 1 154 ASN 154 725 725 ASN ASN A . n A 1 155 ARG 155 726 726 ARG ARG A . n A 1 156 PRO 156 727 727 PRO PRO A . n A 1 157 ASP 157 728 728 ASP ASP A . n A 1 158 ILE 158 729 729 ILE ILE A . n A 1 159 ILE 159 730 730 ILE ILE A . n A 1 160 ASP 160 731 731 ASP ASP A . n A 1 161 PRO 161 732 732 PRO PRO A . n A 1 162 ALA 162 733 733 ALA ALA A . n A 1 163 ILE 163 734 734 ILE ILE A . n A 1 164 LEU 164 735 735 LEU LEU A . n A 1 165 ARG 165 736 736 ARG ARG A . n A 1 166 PRO 166 737 737 PRO PRO A . n A 1 167 GLY 167 738 738 GLY GLY A . n A 1 168 ARG 168 739 739 ARG ARG A . n A 1 169 LEU 169 740 740 LEU LEU A . n A 1 170 ASP 170 741 741 ASP ASP A . n A 1 171 LYS 171 742 742 LYS LYS A . n A 1 172 THR 172 743 743 THR THR A . n A 1 173 LEU 173 744 744 LEU LEU A . n A 1 174 PHE 174 745 745 PHE PHE A . n A 1 175 VAL 175 746 746 VAL VAL A . n A 1 176 GLY 176 747 747 GLY GLY A . n A 1 177 LEU 177 748 748 LEU LEU A . n A 1 178 PRO 178 749 749 PRO PRO A . n A 1 179 PRO 179 750 750 PRO PRO A . n A 1 180 PRO 180 751 751 PRO PRO A . n A 1 181 ALA 181 752 752 ALA ALA A . n A 1 182 ASP 182 753 753 ASP ASP A . n A 1 183 ARG 183 754 754 ARG ARG A . n A 1 184 LEU 184 755 755 LEU LEU A . n A 1 185 ALA 185 756 756 ALA ALA A . n A 1 186 ILE 186 757 757 ILE ILE A . n A 1 187 LEU 187 758 758 LEU LEU A . n A 1 188 LYS 188 759 759 LYS LYS A . n A 1 189 THR 189 760 760 THR THR A . n A 1 190 ILE 190 761 761 ILE ILE A . n A 1 191 THR 191 762 762 THR THR A . n A 1 192 LYS 192 763 763 LYS LYS A . n A 1 193 ASN 193 764 764 ASN ASN A . n A 1 194 GLY 194 765 765 GLY GLY A . n A 1 195 THR 195 766 766 THR THR A . n A 1 196 LYS 196 767 767 LYS LYS A . n A 1 197 PRO 197 768 768 PRO PRO A . n A 1 198 PRO 198 769 769 PRO PRO A . n A 1 199 LEU 199 770 770 LEU LEU A . n A 1 200 ASP 200 771 771 ASP ASP A . n A 1 201 ALA 201 772 772 ALA ALA A . n A 1 202 ASP 202 773 773 ASP ASP A . n A 1 203 VAL 203 774 774 VAL VAL A . n A 1 204 ASN 204 775 775 ASN ASN A . n A 1 205 LEU 205 776 776 LEU LEU A . n A 1 206 GLU 206 777 777 GLU GLU A . n A 1 207 ALA 207 778 778 ALA ALA A . n A 1 208 ILE 208 779 779 ILE ILE A . n A 1 209 ALA 209 780 780 ALA ALA A . n A 1 210 GLY 210 781 781 GLY GLY A . n A 1 211 ASP 211 782 782 ASP ASP A . n A 1 212 LEU 212 783 783 LEU LEU A . n A 1 213 ARG 213 784 784 ARG ARG A . n A 1 214 CYS 214 785 785 CYS CYS A . n A 1 215 ASP 215 786 786 ASP ASP A . n A 1 216 CYS 216 787 787 CYS CYS A . n A 1 217 TYR 217 788 788 TYR TYR A . n A 1 218 THR 218 789 789 THR THR A . n A 1 219 GLY 219 790 790 GLY GLY A . n A 1 220 ALA 220 791 791 ALA ALA A . n A 1 221 ASP 221 792 792 ASP ASP A . n A 1 222 LEU 222 793 793 LEU LEU A . n A 1 223 SER 223 794 794 SER SER A . n A 1 224 ALA 224 795 795 ALA ALA A . n A 1 225 LEU 225 796 796 LEU LEU A . n A 1 226 VAL 226 797 797 VAL VAL A . n A 1 227 ARG 227 798 798 ARG ARG A . n A 1 228 GLU 228 799 799 GLU GLU A . n A 1 229 ALA 229 800 800 ALA ALA A . n A 1 230 SER 230 801 801 SER SER A . n A 1 231 ILE 231 802 802 ILE ILE A . n A 1 232 CYS 232 803 803 CYS CYS A . n A 1 233 ALA 233 804 804 ALA ALA A . n A 1 234 LEU 234 805 805 LEU LEU A . n A 1 235 ARG 235 806 806 ARG ARG A . n A 1 236 GLN 236 807 807 GLN GLN A . n A 1 237 GLU 237 808 808 GLU GLU A . n A 1 238 MET 238 809 809 MET MET A . n A 1 239 ALA 239 810 ? ? ? A . n A 1 240 ARG 240 811 ? ? ? A . n A 1 241 GLN 241 812 ? ? ? A . n A 1 242 LYS 242 813 ? ? ? A . n A 1 243 SER 243 814 ? ? ? A . n A 1 244 GLY 244 815 ? ? ? A . n A 1 245 ASN 245 816 ? ? ? A . n A 1 246 GLU 246 817 ? ? ? A . n A 1 247 LYS 247 818 ? ? ? A . n A 1 248 GLY 248 819 ? ? ? A . n A 1 249 GLU 249 820 ? ? ? A . n A 1 250 LEU 250 821 821 LEU LEU A . n A 1 251 LYS 251 822 822 LYS LYS A . n A 1 252 VAL 252 823 823 VAL VAL A . n A 1 253 SER 253 824 824 SER SER A . n A 1 254 HIS 254 825 825 HIS HIS A . n A 1 255 LYS 255 826 826 LYS LYS A . n A 1 256 HIS 256 827 827 HIS HIS A . n A 1 257 PHE 257 828 828 PHE PHE A . n A 1 258 GLU 258 829 829 GLU GLU A . n A 1 259 GLU 259 830 830 GLU GLU A . n A 1 260 ALA 260 831 831 ALA ALA A . n A 1 261 PHE 261 832 832 PHE PHE A . n A 1 262 LYS 262 833 833 LYS LYS A . n A 1 263 LYS 263 834 834 LYS LYS A . n A 1 264 VAL 264 835 835 VAL VAL A . n A 1 265 ARG 265 836 836 ARG ARG A . n A 1 266 SER 266 837 837 SER SER A . n A 1 267 SER 267 838 838 SER SER A . n A 1 268 ILE 268 839 839 ILE ILE A . n A 1 269 SER 269 840 ? ? ? A . n A 1 270 LYS 270 841 ? ? ? A . n A 1 271 LYS 271 842 ? ? ? A . n A 1 272 ASP 272 843 ? ? ? A . n A 1 273 GLN 273 844 ? ? ? A . n A 1 274 ILE 274 845 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 1840 1840 PO4 PO4 A . C 2 PO4 1 1841 1841 PO4 PO4 A . D 3 HOH 1 2001 2001 HOH HOH A . D 3 HOH 2 2002 2002 HOH HOH A . D 3 HOH 3 2003 2003 HOH HOH A . D 3 HOH 4 2004 2004 HOH HOH A . D 3 HOH 5 2005 2005 HOH HOH A . D 3 HOH 6 2006 2006 HOH HOH A . D 3 HOH 7 2007 2007 HOH HOH A . D 3 HOH 8 2008 2008 HOH HOH A . D 3 HOH 9 2009 2009 HOH HOH A . D 3 HOH 10 2010 2010 HOH HOH A . D 3 HOH 11 2011 2011 HOH HOH A . D 3 HOH 12 2012 2012 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-16 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER-TNT refinement 2.9.2 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2X8A _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'WE EXPRESSED THE C-TERMINAL DOMAIN OF THIS PROTEIN' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 598 ? ? -108.08 -63.11 2 1 LEU A 652 ? ? -92.35 41.54 3 1 VAL A 656 ? ? 80.87 -42.89 4 1 ALA A 685 ? ? 61.28 -17.06 5 1 ARG A 739 ? ? -100.41 -120.38 6 1 LEU A 740 ? ? -95.48 53.31 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 583 ? CG1 ? A ILE 12 CG1 2 1 Y 1 A ILE 583 ? CG2 ? A ILE 12 CG2 3 1 Y 1 A ILE 583 ? CD1 ? A ILE 12 CD1 4 1 Y 1 A LEU 598 ? CG ? A LEU 27 CG 5 1 Y 1 A LEU 598 ? CD1 ? A LEU 27 CD1 6 1 Y 1 A LEU 598 ? CD2 ? A LEU 27 CD2 7 1 Y 1 A GLN 606 ? CG ? A GLN 35 CG 8 1 Y 1 A GLN 606 ? CD ? A GLN 35 CD 9 1 Y 1 A GLN 606 ? OE1 ? A GLN 35 OE1 10 1 Y 1 A GLN 606 ? NE2 ? A GLN 35 NE2 11 1 Y 1 A LYS 633 ? CG ? A LYS 62 CG 12 1 Y 1 A LYS 633 ? CD ? A LYS 62 CD 13 1 Y 1 A LYS 633 ? CE ? A LYS 62 CE 14 1 Y 1 A LYS 633 ? NZ ? A LYS 62 NZ 15 1 Y 1 A SER 645 ? OG ? A SER 74 OG 16 1 Y 1 A GLU 650 ? CG ? A GLU 79 CG 17 1 Y 1 A GLU 650 ? CD ? A GLU 79 CD 18 1 Y 1 A GLU 650 ? OE1 ? A GLU 79 OE1 19 1 Y 1 A GLU 650 ? OE2 ? A GLU 79 OE2 20 1 Y 1 A GLU 658 ? CG ? A GLU 87 CG 21 1 Y 1 A GLU 658 ? CD ? A GLU 87 CD 22 1 Y 1 A GLU 658 ? OE1 ? A GLU 87 OE1 23 1 Y 1 A GLU 658 ? OE2 ? A GLU 87 OE2 24 1 Y 1 A SER 659 ? OG ? A SER 88 OG 25 1 Y 1 A GLU 660 ? CG ? A GLU 89 CG 26 1 Y 1 A GLU 660 ? CD ? A GLU 89 CD 27 1 Y 1 A GLU 660 ? OE1 ? A GLU 89 OE1 28 1 Y 1 A GLU 660 ? OE2 ? A GLU 89 OE2 29 1 Y 1 A ARG 661 ? CG ? A ARG 90 CG 30 1 Y 1 A ARG 661 ? CD ? A ARG 90 CD 31 1 Y 1 A ARG 661 ? NE ? A ARG 90 NE 32 1 Y 1 A ARG 661 ? CZ ? A ARG 90 CZ 33 1 Y 1 A ARG 661 ? NH1 ? A ARG 90 NH1 34 1 Y 1 A ARG 661 ? NH2 ? A ARG 90 NH2 35 1 Y 1 A GLN 665 ? CG ? A GLN 94 CG 36 1 Y 1 A GLN 665 ? CD ? A GLN 94 CD 37 1 Y 1 A GLN 665 ? OE1 ? A GLN 94 OE1 38 1 Y 1 A GLN 665 ? NE2 ? A GLN 94 NE2 39 1 Y 1 A ARG 669 ? CG ? A ARG 98 CG 40 1 Y 1 A ARG 669 ? CD ? A ARG 98 CD 41 1 Y 1 A ARG 669 ? NE ? A ARG 98 NE 42 1 Y 1 A ARG 669 ? CZ ? A ARG 98 CZ 43 1 Y 1 A ARG 669 ? NH1 ? A ARG 98 NH1 44 1 Y 1 A ARG 669 ? NH2 ? A ARG 98 NH2 45 1 Y 1 A GLU 713 ? CG ? A GLU 142 CG 46 1 Y 1 A GLU 713 ? CD ? A GLU 142 CD 47 1 Y 1 A GLU 713 ? OE1 ? A GLU 142 OE1 48 1 Y 1 A GLU 713 ? OE2 ? A GLU 142 OE2 49 1 Y 1 A ASN 725 ? CG ? A ASN 154 CG 50 1 Y 1 A ASN 725 ? OD1 ? A ASN 154 OD1 51 1 Y 1 A ASN 725 ? ND2 ? A ASN 154 ND2 52 1 Y 1 A ARG 736 ? CG ? A ARG 165 CG 53 1 Y 1 A ARG 736 ? CD ? A ARG 165 CD 54 1 Y 1 A ARG 736 ? NE ? A ARG 165 NE 55 1 Y 1 A ARG 736 ? CZ ? A ARG 165 CZ 56 1 Y 1 A ARG 736 ? NH1 ? A ARG 165 NH1 57 1 Y 1 A ARG 736 ? NH2 ? A ARG 165 NH2 58 1 Y 1 A LYS 763 ? CG ? A LYS 192 CG 59 1 Y 1 A LYS 763 ? CD ? A LYS 192 CD 60 1 Y 1 A LYS 763 ? CE ? A LYS 192 CE 61 1 Y 1 A LYS 763 ? NZ ? A LYS 192 NZ 62 1 Y 1 A GLU 777 ? CG ? A GLU 206 CG 63 1 Y 1 A GLU 777 ? CD ? A GLU 206 CD 64 1 Y 1 A GLU 777 ? OE1 ? A GLU 206 OE1 65 1 Y 1 A GLU 777 ? OE2 ? A GLU 206 OE2 66 1 Y 1 A ARG 806 ? CG ? A ARG 235 CG 67 1 Y 1 A ARG 806 ? CD ? A ARG 235 CD 68 1 Y 1 A ARG 806 ? NE ? A ARG 235 NE 69 1 Y 1 A ARG 806 ? CZ ? A ARG 235 CZ 70 1 Y 1 A ARG 806 ? NH1 ? A ARG 235 NH1 71 1 Y 1 A ARG 806 ? NH2 ? A ARG 235 NH2 72 1 Y 1 A GLN 807 ? CG ? A GLN 236 CG 73 1 Y 1 A GLN 807 ? CD ? A GLN 236 CD 74 1 Y 1 A GLN 807 ? OE1 ? A GLN 236 OE1 75 1 Y 1 A GLN 807 ? NE2 ? A GLN 236 NE2 76 1 Y 1 A LYS 826 ? CG ? A LYS 255 CG 77 1 Y 1 A LYS 826 ? CD ? A LYS 255 CD 78 1 Y 1 A LYS 826 ? CE ? A LYS 255 CE 79 1 Y 1 A LYS 826 ? NZ ? A LYS 255 NZ 80 1 Y 1 A LYS 833 ? CG ? A LYS 262 CG 81 1 Y 1 A LYS 833 ? CD ? A LYS 262 CD 82 1 Y 1 A LYS 833 ? CE ? A LYS 262 CE 83 1 Y 1 A LYS 833 ? NZ ? A LYS 262 NZ 84 1 Y 1 A ARG 836 ? CG ? A ARG 265 CG 85 1 Y 1 A ARG 836 ? CD ? A ARG 265 CD 86 1 Y 1 A ARG 836 ? NE ? A ARG 265 NE 87 1 Y 1 A ARG 836 ? CZ ? A ARG 265 CZ 88 1 Y 1 A ARG 836 ? NH1 ? A ARG 265 NH1 89 1 Y 1 A ARG 836 ? NH2 ? A ARG 265 NH2 90 1 Y 1 A ILE 839 ? CG1 ? A ILE 268 CG1 91 1 Y 1 A ILE 839 ? CG2 ? A ILE 268 CG2 92 1 Y 1 A ILE 839 ? CD1 ? A ILE 268 CD1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 572 ? A SER 1 2 1 Y 1 A MET 573 ? A MET 2 3 1 Y 1 A THR 574 ? A THR 3 4 1 Y 1 A VAL 575 ? A VAL 4 5 1 Y 1 A PRO 576 ? A PRO 5 6 1 Y 1 A ASN 577 ? A ASN 6 7 1 Y 1 A VAL 578 ? A VAL 7 8 1 Y 1 A THR 579 ? A THR 8 9 1 Y 1 A TRP 580 ? A TRP 9 10 1 Y 1 A ALA 581 ? A ALA 10 11 1 Y 1 A ASP 582 ? A ASP 11 12 1 Y 1 A ARG 689 ? A ARG 118 13 1 Y 1 A ARG 690 ? A ARG 119 14 1 Y 1 A SER 691 ? A SER 120 15 1 Y 1 A ASP 692 ? A ASP 121 16 1 Y 1 A ARG 693 ? A ARG 122 17 1 Y 1 A GLU 694 ? A GLU 123 18 1 Y 1 A THR 695 ? A THR 124 19 1 Y 1 A GLY 696 ? A GLY 125 20 1 Y 1 A ALA 697 ? A ALA 126 21 1 Y 1 A ALA 810 ? A ALA 239 22 1 Y 1 A ARG 811 ? A ARG 240 23 1 Y 1 A GLN 812 ? A GLN 241 24 1 Y 1 A LYS 813 ? A LYS 242 25 1 Y 1 A SER 814 ? A SER 243 26 1 Y 1 A GLY 815 ? A GLY 244 27 1 Y 1 A ASN 816 ? A ASN 245 28 1 Y 1 A GLU 817 ? A GLU 246 29 1 Y 1 A LYS 818 ? A LYS 247 30 1 Y 1 A GLY 819 ? A GLY 248 31 1 Y 1 A GLU 820 ? A GLU 249 32 1 Y 1 A SER 840 ? A SER 269 33 1 Y 1 A LYS 841 ? A LYS 270 34 1 Y 1 A LYS 842 ? A LYS 271 35 1 Y 1 A ASP 843 ? A ASP 272 36 1 Y 1 A GLN 844 ? A GLN 273 37 1 Y 1 A ILE 845 ? A ILE 274 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #