HEADER OXIDOREDUCTASE 21-MAR-10 2X9J TITLE STRUCTURE OF THE MUTANT D206N OF PHYCOERYTHROBILIN SYNTHASE PEBS FROM TITLE 2 THE CYANOPHAGE P-SSM2 IN COMPLEX WITH BOUND SUBSTRATE BILIVERDIN IXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYCOERYTHROBILIN SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: (3Z)-PHYCOERYTHROBILIN \: FERREDOXIN OXIDOREDUCTASE, COMPND 5 PHYCOBILIN SYNTHASE, BILIVERDIN REDUCTASE; COMPND 6 EC: 1.3.7.6; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROCHLOROCOCCUS PHAGE P-SSM2; SOURCE 3 ORGANISM_TAXID: 268746; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-3; SOURCE 8 OTHER_DETAILS: CYANOPHAGE KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.W.U.BUSCH,N.FRANKENBERG-DINKEL,E.HOFMANN REVDAT 3 20-DEC-23 2X9J 1 REMARK REVDAT 2 25-MAY-11 2X9J 1 JRNL REMARK REVDAT 1 17-NOV-10 2X9J 0 JRNL AUTH A.W.U.BUSCH,E.J.REIJERSE,W.LUBITZ,E.HOFMANN, JRNL AUTH 2 N.FRANKENBERG-DINKEL JRNL TITL RADICAL MECHANISM OF CYANOPHAGE PHYCOERYTHROBILIN SYNTHASE JRNL TITL 2 (PEBS). JRNL REF BIOCHEM.J. V. 433 469 2011 JRNL REFN ISSN 0264-6021 JRNL PMID 21050180 JRNL DOI 10.1042/BJ20101642 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6962 - 4.6591 1.00 2736 133 0.1380 0.1453 REMARK 3 2 4.6591 - 3.6989 1.00 2591 201 0.1257 0.1536 REMARK 3 3 3.6989 - 3.2316 1.00 2695 98 0.1446 0.1988 REMARK 3 4 3.2316 - 2.9362 1.00 2673 117 0.1632 0.1873 REMARK 3 5 2.9362 - 2.7258 1.00 2638 135 0.1620 0.2121 REMARK 3 6 2.7258 - 2.5651 1.00 2636 144 0.1650 0.2357 REMARK 3 7 2.5651 - 2.4367 1.00 2574 185 0.1675 0.2106 REMARK 3 8 2.4367 - 2.3306 1.00 2583 203 0.1625 0.2012 REMARK 3 9 2.3306 - 2.2409 1.00 2530 218 0.1676 0.2130 REMARK 3 10 2.2409 - 2.1636 1.00 2779 0 0.1611 0.0000 REMARK 3 11 2.1636 - 2.0959 1.00 2518 256 0.1645 0.1968 REMARK 3 12 2.0959 - 2.0360 1.00 2724 22 0.1649 0.1717 REMARK 3 13 2.0360 - 1.9824 1.00 2490 252 0.1745 0.2351 REMARK 3 14 1.9824 - 1.9341 1.00 2501 269 0.1695 0.2405 REMARK 3 15 1.9341 - 1.8901 1.00 2750 14 0.1891 0.1585 REMARK 3 16 1.8901 - 1.8499 0.99 2720 0 0.1922 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 40.26 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.08300 REMARK 3 B22 (A**2) : 8.42810 REMARK 3 B33 (A**2) : -5.34510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.81330 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3720 REMARK 3 ANGLE : 1.574 5038 REMARK 3 CHIRALITY : 0.119 498 REMARK 3 PLANARITY : 0.008 652 REMARK 3 DIHEDRAL : 17.724 1340 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND RESSEQ 1234 REMARK 3 SELECTION : CHAIN B AND RESSEQ 1234 REMARK 3 ATOM PAIRS NUMBER : 43 REMARK 3 RMSD : 0.062 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 22:54 OR RESSEQ 57:63 REMARK 3 OR RESSEQ 65:75 OR RESSEQ 77:131 OR REMARK 3 RESSEQ 133:137 OR RESSEQ 144:165 OR REMARK 3 RESSEQ 167:203 OR RESSEQ 206:233) AND REMARK 3 BACKBONE REMARK 3 SELECTION : CHAIN B AND (RESSEQ 22:54 OR RESSEQ 57:63 REMARK 3 OR RESSEQ 65:75 OR RESSEQ 77:131 OR REMARK 3 RESSEQ 133:137 OR RESSEQ 144:165 OR REMARK 3 RESSEQ 167:203 OR RESSEQ 206:233) AND REMARK 3 BACKBONE REMARK 3 ATOM PAIRS NUMBER : 796 REMARK 3 RMSD : 0.035 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 22:54 OR RESSEQ 57:63 REMARK 3 OR RESSEQ 65:75 OR RESSEQ 77:131 OR REMARK 3 RESSEQ 133:137 OR RESSEQ 144:165 OR REMARK 3 RESSEQ 167:203 OR RESSEQ 206:233) AND REMARK 3 SIDECHAIN REMARK 3 SELECTION : CHAIN B AND (RESSEQ 22:54 OR RESSEQ 57:63 REMARK 3 OR RESSEQ 65:75 OR RESSEQ 77:131 OR REMARK 3 RESSEQ 133:137 OR RESSEQ 144:165 OR REMARK 3 RESSEQ 167:203 OR RESSEQ 206:233) AND REMARK 3 SIDECHAIN REMARK 3 ATOM PAIRS NUMBER : 850 REMARK 3 RMSD : 0.197 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1290043368. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SILICON 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44404 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.880 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.93 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2VGR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 170MM (NH4)2SO4, 20%PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.57500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 206 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 206 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 ASN A 7 REMARK 465 ASN A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 10 REMARK 465 LYS A 11 REMARK 465 LYS A 12 REMARK 465 ILE A 13 REMARK 465 LEU A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 TYR A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 LYS A 21 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LYS B 3 REMARK 465 ASN B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 ASN B 7 REMARK 465 ASN B 8 REMARK 465 LYS B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 12 REMARK 465 ILE B 13 REMARK 465 LEU B 14 REMARK 465 ASP B 15 REMARK 465 SER B 16 REMARK 465 SER B 17 REMARK 465 TYR B 18 REMARK 465 LYS B 19 REMARK 465 SER B 20 REMARK 465 LYS B 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 70 -3.45 79.22 REMARK 500 PHE A 144 168.01 69.98 REMARK 500 PHE A 228 -59.37 -122.44 REMARK 500 ASP B 55 40.14 -104.94 REMARK 500 HIS B 70 -2.62 80.17 REMARK 500 PHE B 144 169.75 64.62 REMARK 500 LEU B 205 26.93 46.74 REMARK 500 PHE B 228 -60.46 -123.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 205 ASN A 206 -149.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2036 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLA A 1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLA B 1234 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VCL RELATED DB: PDB REMARK 900 STRUCTURE OF THE PHYCOERYTHROBILIN SYNTHASE PEBS FROM THE REMARK 900 CYANOPHAGE P-SSM2 IN THE SUBSTRATE FREE FORM REMARK 900 RELATED ID: 2X9I RELATED DB: PDB REMARK 900 STRUCTURE OF THE MUTANT D105N OF PHYCOERYTHROBILIN SYNTHASE PEBS REMARK 900 FROM THE CYANOPHAGE P-SSM2 IN COMPLEX WITH BOUND SUBSTRATE REMARK 900 BILIVERDIN IXA REMARK 900 RELATED ID: 2VCK RELATED DB: PDB REMARK 900 STRUCTURE OF THE PHYCOERYTHROBILIN SYNTHASE PEBS FROM THE REMARK 900 CYANOPHAGE P-SSM2 IN COMPLEX WITH THE BOUND SUBSTRATE BILIVERDIN IXA REMARK 900 RELATED ID: 2VGR RELATED DB: PDB REMARK 900 STRUCTURE OF THE WT-PHYCOERYTHROBILIN SYNTHASE PEBS FROM THE REMARK 900 CYANOPHAGE P-SSM2 IN COMPLEX WITH THE BOUND SUBSTRATE BILIVERDIN IXA DBREF 2X9J A 1 233 UNP Q58MU6 PEBS_BPPRM 1 233 DBREF 2X9J B 1 233 UNP Q58MU6 PEBS_BPPRM 1 233 SEQADV 2X9J ASN A 206 UNP Q58MU6 ASP 206 ENGINEERED MUTATION SEQADV 2X9J ASN B 206 UNP Q58MU6 ASP 206 ENGINEERED MUTATION SEQRES 1 A 233 MET THR LYS ASN PRO ARG ASN ASN LYS PRO LYS LYS ILE SEQRES 2 A 233 LEU ASP SER SER TYR LYS SER LYS THR ILE TRP GLN ASN SEQRES 3 A 233 TYR ILE ASP ALA LEU PHE GLU THR PHE PRO GLN LEU GLU SEQRES 4 A 233 ILE SER GLU VAL TRP ALA LYS TRP ASP GLY GLY ASN VAL SEQRES 5 A 233 THR LYS ASP GLY GLY ASP ALA LYS LEU THR ALA ASN ILE SEQRES 6 A 233 ARG THR GLY GLU HIS PHE LEU LYS ALA ARG GLU ALA HIS SEQRES 7 A 233 ILE VAL ASP PRO ASN SER ASP ILE TYR ASN THR ILE LEU SEQRES 8 A 233 TYR PRO LYS THR GLY ALA ASP LEU PRO CYS PHE GLY MET SEQRES 9 A 233 ASP LEU MET LYS PHE SER ASP LYS LYS VAL ILE ILE VAL SEQRES 10 A 233 PHE ASP PHE GLN HIS PRO ARG GLU LYS TYR LEU PHE SER SEQRES 11 A 233 VAL ASP GLY LEU PRO GLU ASP ASP GLY LYS TYR ARG PHE SEQRES 12 A 233 PHE GLU MET GLY ASN HIS PHE SER LYS ASN ILE PHE VAL SEQRES 13 A 233 ARG TYR CYS LYS PRO ASP GLU VAL ASP GLN TYR LEU ASP SEQRES 14 A 233 THR PHE LYS LEU TYR LEU THR LYS TYR LYS GLU MET ILE SEQRES 15 A 233 ASP ASN ASN LYS PRO VAL GLY GLU ASP THR THR VAL TYR SEQRES 16 A 233 SER ASP PHE ASP THR TYR MET THR GLU LEU ASN PRO VAL SEQRES 17 A 233 ARG GLY TYR MET LYS ASN LYS PHE GLY GLU GLY ARG SER SEQRES 18 A 233 GLU ALA PHE VAL ASN ASP PHE LEU PHE SER TYR LYS SEQRES 1 B 233 MET THR LYS ASN PRO ARG ASN ASN LYS PRO LYS LYS ILE SEQRES 2 B 233 LEU ASP SER SER TYR LYS SER LYS THR ILE TRP GLN ASN SEQRES 3 B 233 TYR ILE ASP ALA LEU PHE GLU THR PHE PRO GLN LEU GLU SEQRES 4 B 233 ILE SER GLU VAL TRP ALA LYS TRP ASP GLY GLY ASN VAL SEQRES 5 B 233 THR LYS ASP GLY GLY ASP ALA LYS LEU THR ALA ASN ILE SEQRES 6 B 233 ARG THR GLY GLU HIS PHE LEU LYS ALA ARG GLU ALA HIS SEQRES 7 B 233 ILE VAL ASP PRO ASN SER ASP ILE TYR ASN THR ILE LEU SEQRES 8 B 233 TYR PRO LYS THR GLY ALA ASP LEU PRO CYS PHE GLY MET SEQRES 9 B 233 ASP LEU MET LYS PHE SER ASP LYS LYS VAL ILE ILE VAL SEQRES 10 B 233 PHE ASP PHE GLN HIS PRO ARG GLU LYS TYR LEU PHE SER SEQRES 11 B 233 VAL ASP GLY LEU PRO GLU ASP ASP GLY LYS TYR ARG PHE SEQRES 12 B 233 PHE GLU MET GLY ASN HIS PHE SER LYS ASN ILE PHE VAL SEQRES 13 B 233 ARG TYR CYS LYS PRO ASP GLU VAL ASP GLN TYR LEU ASP SEQRES 14 B 233 THR PHE LYS LEU TYR LEU THR LYS TYR LYS GLU MET ILE SEQRES 15 B 233 ASP ASN ASN LYS PRO VAL GLY GLU ASP THR THR VAL TYR SEQRES 16 B 233 SER ASP PHE ASP THR TYR MET THR GLU LEU ASN PRO VAL SEQRES 17 B 233 ARG GLY TYR MET LYS ASN LYS PHE GLY GLU GLY ARG SER SEQRES 18 B 233 GLU ALA PHE VAL ASN ASP PHE LEU PHE SER TYR LYS HET BLA A1234 43 HET BLA B1234 43 HETNAM BLA BILIVERDINE IX ALPHA FORMUL 3 BLA 2(C33 H34 N4 O6) FORMUL 5 HOH *429(H2 O) HELIX 1 1 TRP A 24 PHE A 35 1 12 HELIX 2 2 LYS A 160 GLN A 166 5 7 HELIX 3 3 TYR A 167 LYS A 186 1 20 HELIX 4 4 ASP A 191 VAL A 194 5 4 HELIX 5 5 TYR A 195 LEU A 205 1 11 HELIX 6 6 PRO A 207 GLY A 217 1 11 HELIX 7 7 GLY A 217 PHE A 228 1 12 HELIX 8 8 TRP B 24 PHE B 35 1 12 HELIX 9 9 LYS B 160 GLN B 166 5 7 HELIX 10 10 TYR B 167 LYS B 186 1 20 HELIX 11 11 ASP B 191 VAL B 194 5 4 HELIX 12 12 TYR B 195 GLU B 204 1 10 HELIX 13 13 PRO B 207 GLY B 217 1 11 HELIX 14 14 GLY B 217 PHE B 228 1 12 SHEET 1 AA 7 GLU A 39 THR A 53 0 SHEET 2 AA 7 GLY A 56 GLY A 68 -1 O GLY A 56 N THR A 53 SHEET 3 AA 7 PHE A 71 VAL A 80 -1 O PHE A 71 N GLY A 68 SHEET 4 AA 7 ASP A 85 PRO A 93 -1 O ILE A 86 N ILE A 79 SHEET 5 AA 7 CYS A 101 LYS A 108 -1 O PHE A 102 N LEU A 91 SHEET 6 AA 7 VAL A 114 GLN A 121 -1 O ILE A 115 N MET A 107 SHEET 7 AA 7 PHE A 155 CYS A 159 -1 O PHE A 155 N PHE A 118 SHEET 1 BA 7 GLU B 39 THR B 53 0 SHEET 2 BA 7 GLY B 56 GLY B 68 -1 O GLY B 56 N THR B 53 SHEET 3 BA 7 PHE B 71 VAL B 80 -1 O PHE B 71 N GLY B 68 SHEET 4 BA 7 ASP B 85 PRO B 93 -1 O ILE B 86 N ILE B 79 SHEET 5 BA 7 CYS B 101 LYS B 108 -1 O PHE B 102 N LEU B 91 SHEET 6 BA 7 VAL B 114 GLN B 121 -1 O ILE B 115 N MET B 107 SHEET 7 BA 7 PHE B 155 CYS B 159 -1 O PHE B 155 N PHE B 118 SITE 1 AC1 21 ILE A 79 ILE A 86 ASN A 88 ILE A 90 SITE 2 AC1 21 ASP A 105 MET A 107 ILE A 115 VAL A 117 SITE 3 AC1 21 GLN A 121 TYR A 141 ARG A 142 PHE A 143 SITE 4 AC1 21 PHE A 144 TYR A 158 MET A 202 ASN A 206 SITE 5 AC1 21 PRO A 207 VAL A 208 TYR A 211 HOH A2218 SITE 6 AC1 21 HOH A2219 SITE 1 AC2 23 ILE B 79 ILE B 86 ASN B 88 ILE B 90 SITE 2 AC2 23 ASP B 105 MET B 107 ILE B 115 VAL B 117 SITE 3 AC2 23 GLN B 121 TYR B 141 ARG B 142 PHE B 143 SITE 4 AC2 23 PHE B 144 PHE B 150 TYR B 158 MET B 202 SITE 5 AC2 23 ASN B 206 PRO B 207 VAL B 208 TYR B 211 SITE 6 AC2 23 PHE B 230 HOH B2209 HOH B2210 CRYST1 53.810 63.150 81.650 90.00 108.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018584 0.000000 0.006229 0.00000 SCALE2 0.000000 0.015835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012917 0.00000 MTRIX1 1 -0.990974 -0.134053 -0.000499 0.27854 1 MTRIX2 1 -0.133894 0.989602 0.052547 -0.84641 1 MTRIX3 1 -0.006550 0.052140 -0.998618 32.30480 1