HEADER CELL ADHESION 25-MAR-10 2X9X TITLE STRUCTURE OF THE PILUS BACKBONE (RRGB) FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL WALL SURFACE ANCHOR FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BACKBONE SUBUNIT PILI, RESIDUES 184-627; COMPND 5 SYNONYM: RRGB; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: ISOPEPTIDE-BOND LINKS N318 AND K193, N428 AND K349, COMPND 9 N623 AND K453 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR G.SPRAGGON,E.KOESEMA,M.SCARSELLI,E.MALITO,M.BIAGINI,N.NORAIS,C.EMOLO, AUTHOR 2 M.A.BAROCCHI,F.GIUSTI,M.HILLERINGMANN,R.RAPPUOLI,S.LESLEY,A.COVACCI, AUTHOR 3 V.MASIGNANI,I.FERLENGHI REVDAT 3 20-DEC-23 2X9X 1 REMARK LINK REVDAT 2 06-MAR-13 2X9X 1 SOURCE REMARK VERSN REVDAT 1 30-JUN-10 2X9X 0 JRNL AUTH G.SPRAGGON,E.KOESEMA,M.SCARSELLI,E.MALITO,M.BIAGINI, JRNL AUTH 2 N.NORAIS,C.EMOLO,M.A.BAROCCHI,F.GIUSTI,M.HILLERINGMANN, JRNL AUTH 3 R.RAPPUOLI,S.LESLEY,A.COVACCI,V.MASIGNANI,I.FERLENGHI JRNL TITL SUPRAMOLECULAR ORGANIZATION OF THE REPETITIVE BACKBONE UNIT JRNL TITL 2 OF THE STREPTOCOCCUS PNEUMONIAE PILUS. JRNL REF PLOS ONE V. 5 919 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20559564 JRNL DOI 10.1371/JOURNAL.PONE.0010919 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 85061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6873 - 4.6594 0.98 2934 157 0.1896 0.1710 REMARK 3 2 4.6594 - 3.6987 1.00 2790 154 0.1521 0.1659 REMARK 3 3 3.6987 - 3.2313 1.00 2756 152 0.1494 0.1718 REMARK 3 4 3.2313 - 2.9359 1.00 2740 156 0.1785 0.2025 REMARK 3 5 2.9359 - 2.7255 1.00 2713 171 0.1877 0.2276 REMARK 3 6 2.7255 - 2.5649 1.00 2720 141 0.1776 0.2067 REMARK 3 7 2.5649 - 2.4364 1.00 2701 143 0.1696 0.2104 REMARK 3 8 2.4364 - 2.3304 1.00 2720 138 0.1635 0.1927 REMARK 3 9 2.3304 - 2.2406 1.00 2677 149 0.1495 0.1844 REMARK 3 10 2.2406 - 2.1633 1.00 2714 134 0.1452 0.1854 REMARK 3 11 2.1633 - 2.0957 1.00 2710 131 0.1408 0.1984 REMARK 3 12 2.0957 - 2.0358 1.00 2699 136 0.1440 0.1783 REMARK 3 13 2.0358 - 1.9822 1.00 2708 138 0.1343 0.1750 REMARK 3 14 1.9822 - 1.9338 1.00 2692 126 0.1312 0.1769 REMARK 3 15 1.9338 - 1.8899 1.00 2676 141 0.1332 0.1852 REMARK 3 16 1.8899 - 1.8496 1.00 2675 153 0.1383 0.2010 REMARK 3 17 1.8496 - 1.8126 1.00 2690 133 0.1340 0.1945 REMARK 3 18 1.8126 - 1.7784 1.00 2663 149 0.1444 0.1984 REMARK 3 19 1.7784 - 1.7467 1.00 2689 135 0.1504 0.2000 REMARK 3 20 1.7467 - 1.7171 1.00 2643 138 0.1554 0.2350 REMARK 3 21 1.7171 - 1.6894 1.00 2685 153 0.1576 0.2128 REMARK 3 22 1.6894 - 1.6634 1.00 2649 154 0.1634 0.2452 REMARK 3 23 1.6634 - 1.6389 1.00 2675 132 0.1677 0.2174 REMARK 3 24 1.6389 - 1.6158 0.99 2667 124 0.1686 0.2515 REMARK 3 25 1.6158 - 1.5940 1.00 2660 145 0.1769 0.2349 REMARK 3 26 1.5940 - 1.5733 1.00 2641 127 0.1833 0.2643 REMARK 3 27 1.5733 - 1.5536 0.99 2687 127 0.2073 0.2618 REMARK 3 28 1.5536 - 1.5349 1.00 2629 145 0.2173 0.3142 REMARK 3 29 1.5349 - 1.5170 0.99 2615 144 0.2399 0.3353 REMARK 3 30 1.5170 - 1.5000 0.96 2590 127 0.2568 0.3148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 50.13 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18570 REMARK 3 B22 (A**2) : -1.18570 REMARK 3 B33 (A**2) : 2.37130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3337 REMARK 3 ANGLE : 0.849 4568 REMARK 3 CHIRALITY : 0.056 542 REMARK 3 PLANARITY : 0.003 600 REMARK 3 DIHEDRAL : 16.150 1182 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1290043410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85582 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2X9W REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 0.05 REMARK 280 POTASSIUM DIHYDROGEN PHOSPHATE, 20% PEG-8000 PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.80267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.60533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.70400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.50667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.90133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.80267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 59.60533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.50667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.70400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 14.90133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 374 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 184 REMARK 465 THR A 185 REMARK 465 GLU A 186 REMARK 465 GLN A 514 REMARK 465 GLN A 515 REMARK 465 THR A 516 REMARK 465 GLN A 517 REMARK 465 GLN A 518 REMARK 465 GLU A 519 REMARK 465 LYS A 624 REMARK 465 LYS A 625 REMARK 465 ILE A 626 REMARK 465 THR A 627 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ASP A 209 CG OD1 OD2 REMARK 470 LEU A 231 CG CD1 CD2 REMARK 470 ASN A 318 ND2 REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 GLU A 417 CG CD OE1 OE2 REMARK 470 ASN A 428 ND2 REMARK 470 ASP A 456 CG OD1 OD2 REMARK 470 GLN A 491 CG CD OE1 NE2 REMARK 470 LEU A 510 CG CD1 CD2 REMARK 470 THR A 511 OG1 CG2 REMARK 470 GLN A 513 CG CD OE1 NE2 REMARK 470 LYS A 520 CG CD CE NZ REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 ASN A 623 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 193 CG ASN A 318 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 208 CE LYS A 208 NZ -0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 319 98.52 -165.85 REMARK 500 ASN A 455 -169.26 -102.36 REMARK 500 ALA A 474 -135.86 52.10 REMARK 500 GLN A 605 -151.65 -114.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2190 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1625 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 319 OD1 REMARK 620 2 VAL A 320 O 99.4 REMARK 620 3 ASP A 438 OD1 137.6 113.0 REMARK 620 4 GLU A 441 OE2 96.2 83.6 113.3 REMARK 620 5 HOH A2293 O 75.6 173.7 73.2 93.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 1624 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1625 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X9Z RELATED DB: PDB REMARK 900 STRUCTURE OF THE PILUS BACKBONE (RRGB) FROM STREPTOCOCCUS PNEUMONIAE REMARK 900 RELATED ID: 2X9W RELATED DB: PDB REMARK 900 STRUCTURE OF THE PILUS BACKBONE (RRGB) FROM STREPTOCOCCUS PNEUMONIAE REMARK 900 RELATED ID: 2X9Y RELATED DB: PDB REMARK 900 STRUCTURE OF THE PILUS BACKBONE (RRGB) FROM STREPTOCOCCUS PNEUMONIAE DBREF 2X9X A 184 627 UNP Q97SC2 Q97SC2_STRPN 184 627 SEQADV 2X9X ALA A 374 UNP Q97SC2 THR 374 ENGINEERED MUTATION SEQRES 1 A 444 ASN THR GLU ALA LYS PRO LYS ILE ASP LYS ASP PHE LYS SEQRES 2 A 444 GLY LYS ALA ASN PRO ASP THR PRO ARG VAL ASP LYS ASP SEQRES 3 A 444 THR PRO VAL ASN HIS GLN VAL GLY ASP VAL VAL GLU TYR SEQRES 4 A 444 GLU ILE VAL THR LYS ILE PRO ALA LEU ALA ASN TYR ALA SEQRES 5 A 444 THR ALA ASN TRP SER ASP ARG MSE THR GLU GLY LEU ALA SEQRES 6 A 444 PHE ASN LYS GLY THR VAL LYS VAL THR VAL ASP ASP VAL SEQRES 7 A 444 ALA LEU GLU ALA GLY ASP TYR ALA LEU THR GLU VAL ALA SEQRES 8 A 444 THR GLY PHE ASP LEU LYS LEU THR ASP ALA GLY LEU ALA SEQRES 9 A 444 LYS VAL ASN ASP GLN ASN ALA GLU LYS THR VAL LYS ILE SEQRES 10 A 444 THR TYR SER ALA THR LEU ASN ASP LYS ALA ILE VAL GLU SEQRES 11 A 444 VAL PRO GLU SER ASN ASP VAL THR PHE ASN TYR GLY ASN SEQRES 12 A 444 ASN PRO ASP HIS GLY ASN THR PRO LYS PRO ASN LYS PRO SEQRES 13 A 444 ASN GLU ASN GLY ASP LEU THR LEU THR LYS THR TRP VAL SEQRES 14 A 444 ASP ALA THR GLY ALA PRO ILE PRO ALA GLY ALA GLU ALA SEQRES 15 A 444 THR PHE ASP LEU VAL ASN ALA GLN ALA GLY LYS VAL VAL SEQRES 16 A 444 GLN THR VAL THR LEU THR THR ASP LYS ASN THR VAL THR SEQRES 17 A 444 VAL ASN GLY LEU ASP LYS ASN THR GLU TYR LYS PHE VAL SEQRES 18 A 444 GLU ARG SER ILE LYS GLY TYR SER ALA ASP TYR GLN GLU SEQRES 19 A 444 ILE THR THR ALA GLY GLU ILE ALA VAL LYS ASN TRP LYS SEQRES 20 A 444 ASP GLU ASN PRO LYS PRO LEU ASP PRO THR GLU PRO LYS SEQRES 21 A 444 VAL VAL THR TYR GLY LYS LYS PHE VAL LYS VAL ASN ASP SEQRES 22 A 444 LYS ASP ASN ARG LEU ALA GLY ALA GLU PHE VAL ILE ALA SEQRES 23 A 444 ASN ALA ASP ASN ALA GLY GLN TYR LEU ALA ARG LYS ALA SEQRES 24 A 444 ASP LYS VAL SER GLN GLU GLU LYS GLN LEU VAL VAL THR SEQRES 25 A 444 THR LYS ASP ALA LEU ASP ARG ALA VAL ALA ALA TYR ASN SEQRES 26 A 444 ALA LEU THR ALA GLN GLN GLN THR GLN GLN GLU LYS GLU SEQRES 27 A 444 LYS VAL ASP LYS ALA GLN ALA ALA TYR ASN ALA ALA VAL SEQRES 28 A 444 ILE ALA ALA ASN ASN ALA PHE GLU TRP VAL ALA ASP LYS SEQRES 29 A 444 ASP ASN GLU ASN VAL VAL LYS LEU VAL SER ASP ALA GLN SEQRES 30 A 444 GLY ARG PHE GLU ILE THR GLY LEU LEU ALA GLY THR TYR SEQRES 31 A 444 TYR LEU GLU GLU THR LYS GLN PRO ALA GLY TYR ALA LEU SEQRES 32 A 444 LEU THR SER ARG GLN LYS PHE GLU VAL THR ALA THR SER SEQRES 33 A 444 TYR SER ALA THR GLY GLN GLY ILE GLU TYR THR ALA GLY SEQRES 34 A 444 SER GLY LYS ASP ASP ALA THR LYS VAL VAL ASN LYS LYS SEQRES 35 A 444 ILE THR MODRES 2X9X MSE A 243 MET SELENOMETHIONINE HET MSE A 243 8 HET IMD A1624 7 HET NA A1625 1 HETNAM MSE SELENOMETHIONINE HETNAM IMD IMIDAZOLE HETNAM NA SODIUM ION FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 IMD C3 H5 N2 1+ FORMUL 3 NA NA 1+ FORMUL 4 HOH *427(H2 O) HELIX 1 1 GLU A 264 GLY A 266 5 3 HELIX 2 2 THR A 282 ASN A 290 1 9 HELIX 3 3 ALA A 482 VAL A 485 5 4 HELIX 4 4 SER A 486 ALA A 509 1 24 HELIX 5 5 LYS A 520 ASN A 538 1 19 SHEET 1 AA 5 LYS A 190 PHE A 195 0 SHEET 2 AA 5 VAL A 219 ILE A 228 -1 O GLU A 223 N ASP A 194 SHEET 3 AA 5 LYS A 296 LEU A 306 -1 O LYS A 296 N ILE A 228 SHEET 4 AA 5 LYS A 255 VAL A 258 -1 O LYS A 255 N THR A 301 SHEET 5 AA 5 VAL A 261 ALA A 262 -1 O VAL A 261 N VAL A 258 SHEET 1 AB 4 LYS A 190 PHE A 195 0 SHEET 2 AB 4 VAL A 219 ILE A 228 -1 O GLU A 223 N ASP A 194 SHEET 3 AB 4 LYS A 296 LEU A 306 -1 O LYS A 296 N ILE A 228 SHEET 4 AB 4 LEU A 247 PHE A 249 -1 O ALA A 248 N THR A 305 SHEET 1 AC 3 VAL A 212 ASN A 213 0 SHEET 2 AC 3 LYS A 443 VAL A 445 1 O LYS A 443 N VAL A 212 SHEET 3 AC 3 GLU A 316 SER A 317 -1 O GLU A 316 N VAL A 444 SHEET 1 AD 4 TYR A 268 VAL A 273 0 SHEET 2 AD 4 GLY A 276 LEU A 281 -1 O GLY A 276 N VAL A 273 SHEET 3 AD 4 THR A 236 ARG A 242 -1 O ALA A 237 N LEU A 281 SHEET 4 AD 4 VAL A 320 GLY A 325 -1 O THR A 321 N SER A 240 SHEET 1 AE 4 THR A 389 VAL A 392 0 SHEET 2 AE 4 LEU A 345 VAL A 352 -1 O LEU A 345 N VAL A 392 SHEET 3 AE 4 GLU A 423 TRP A 429 1 O ILE A 424 N THR A 348 SHEET 4 AE 4 SER A 412 TYR A 415 -1 O SER A 412 N TRP A 429 SHEET 1 AF 3 VAL A 377 LEU A 383 0 SHEET 2 AF 3 ALA A 365 ASN A 371 -1 O ALA A 365 N LEU A 383 SHEET 3 AF 3 TYR A 401 GLU A 405 -1 O LYS A 402 N VAL A 370 SHEET 1 AG 3 ARG A 562 LEU A 568 0 SHEET 2 AG 3 TYR A 447 VAL A 454 -1 O TYR A 447 N LEU A 568 SHEET 3 AG 3 THR A 619 VAL A 622 1 O THR A 619 N VAL A 452 SHEET 1 AH 4 LEU A 555 VAL A 556 0 SHEET 2 AH 4 GLU A 465 ALA A 469 -1 O PHE A 466 N LEU A 555 SHEET 3 AH 4 GLY A 571 LYS A 579 -1 O TYR A 574 N ALA A 469 SHEET 4 AH 4 GLN A 591 VAL A 595 -1 O GLN A 591 N LEU A 575 SHEET 1 AI 2 TYR A 477 ARG A 480 0 SHEET 2 AI 2 PHE A 541 VAL A 544 -1 O GLU A 542 N ALA A 479 LINK C ARG A 242 N MSE A 243 1555 1555 1.33 LINK C MSE A 243 N THR A 244 1555 1555 1.33 LINK OD1 ASP A 319 NA NA A1625 1555 1555 2.54 LINK O VAL A 320 NA NA A1625 1555 1555 2.51 LINK OD1 ASP A 438 NA NA A1625 1555 1555 2.75 LINK OE2 GLU A 441 NA NA A1625 1555 1555 2.64 LINK NA NA A1625 O HOH A2293 1555 1555 3.19 SITE 1 AC1 4 VAL A 258 LYS A 296 PRO A 358 PRO A 360 SITE 1 AC2 4 ASP A 319 VAL A 320 ASP A 438 GLU A 441 CRYST1 142.563 142.563 89.408 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007014 0.004050 0.000000 0.00000 SCALE2 0.000000 0.008100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011185 0.00000